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IPR005539 is a ELK domain.
<p>Homeobox genes, which encode homeodomain (HD) transcription factors, are known to be key regulators of both plant and animal development. In plants homeobox genes are divided into several groups by sequences, one of which is the KNOX (for knotted1-type homeobox) family. Proteins of this family share other conserved domains, the KNOX domain and ELK domain, which is immediately upstream of the HD. The ELK domain spans ~21 amino acids and was dubbed for a highly conserved series of Glu, Leu, and Lys amino acids. It could function as a nuclear localization signal. The ELK domain also is considered to act as a protein-protein interaction domain, but the precise role of this domain has not been determined [[cite:PUB00033717], [cite:PUB00033718], [cite:PUB00008432], [cite:PUB00033719]].</p> <p>The ELK domain contains repeating hydrophobic residues and has been predicted to form an amphipathic helix [[cite:PUB00033717]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Homeobox protein knotted-1-like 2-like [Glycine max] gi|388556558|ref|NP_001253999.1| | 24 | ||
| – | PREDICTED: homeobox protein knotted-1-like 1-like isoform 1 [Glycine max] gi|356535014|ref|XP_003536044.1| | 24 | ||
| – | PREDICTED: homeobox protein knotted-1-like LET12-like isoform X2 [Cicer arietinum] gi|502167120|ref|XP_004514061.1| | 22 | ||
| – | PREDICTED: homeobox protein knotted-1-like 3-like [Glycine max] gi|356562896|ref|XP_003549704.1| | 22 | ||
| – | PREDICTED: homeobox protein knotted-1-like 3-like [Glycine max] gi|356507510|ref|XP_003522507.1| | 22 | ||
| – | Knotted-1 homeobox protein [Caragana korshinskii] gi|480328047|gb|AGJ83725.1| | 18 | ||
| – | PREDICTED: homeobox protein knotted-1-like 7-like [Glycine max] gi|356495645|ref|XP_003516685.1| | 19 | ||
| – | PREDICTED: homeobox protein SBH1-like isoform 1 [Glycine max] gi|356554468|ref|XP_003545568.1| | 23 | ||
| – | KNT1 [Glycine max] gi|351734506|ref|NP_001237352.1| | 23 | ||
| – | PREDICTED: homeobox protein knotted-1-like LET12-like isoform X1 [Cicer arietinum] gi|502167116|ref|XP_004514060.1| | 22 | ||
| – | Knox class 1 protein [Pisum sativum] gi|3426304|gb|AAC32262.1| | 23 | ||
| – | Homeobox protein knotted-1, putative; TAIR: AT1G62360.1 KNOX/ELK homeobox transcription factor; Swiss-Prot: sp|P46608|HSBH1_SOYBN Homeobox protein SBH1; TrEMBL-Plants: tr|V7B6U2|V7B6U2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0065200 | 23 | ||
| – | Homeobox protein knotted-1, putative; TAIR: AT1G62360.1 KNOX/ELK homeobox transcription factor; Swiss-Prot: sp|P46608|HSBH1_SOYBN Homeobox protein SBH1; TrEMBL-Plants: tr|A0A0S3RK69|A0A0S3RK69_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0065200 | 23 | ||
| – | Homeobox protein knotted-1, putative; TAIR: AT5G25220.2 homeobox protein knotted-1-like 3; Swiss-Prot: sp|O04136|KNAP3_MALDO Homeobox protein knotted-1-like 3; TrEMBL-Plants: tr|V7ATS5|V7ATS5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0380300 | 22 | ||
| – | Homeobox 1; TAIR: AT1G23380.1 homeobox protein knotted-1-like 6; Swiss-Prot: sp|Q84JS6|KNAT6_ARATH Homeobox protein knotted-1-like 6; TrEMBL-Plants: tr|R9R650|R9R650_9FABA Knotted-1 homeobox protein; Found in the gene: LotjaGi2g1v0322900 | 24 | ||
| – | Homeobox 1; TAIR: AT1G23380.1 homeobox protein knotted-1-like 6; Swiss-Prot: sp|Q84JS6|KNAT6_ARATH Homeobox protein knotted-1-like 6; TrEMBL-Plants: tr|G7K060|G7K060_MEDTR Homeobox knotted-like protein; Found in the gene: LotjaGi2g1v0322900 | 24 | ||
| – | Homeobox protein knotted-1, putative; TAIR: AT1G62990.1 homeobox knotted-like protein; Swiss-Prot: sp|Q9FPQ8|KNAT7_ARATH Homeobox protein knotted-1-like 7; TrEMBL-Plants: tr|A0A0L9UPV4|A0A0L9UPV4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0430100 | 19 | ||
| – | Homeobox protein knotted-1, putative; TAIR: AT1G62990.1 homeobox knotted-like protein; Swiss-Prot: sp|Q9FPQ8|KNAT7_ARATH Homeobox protein knotted-1-like 7; TrEMBL-Plants: tr|A0A0L9UPV4|A0A0L9UPV4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0430100 | 19 | ||
| – | Homeobox-1; TAIR: AT1G62360.1 KNOX/ELK homeobox transcription factor; Swiss-Prot: sp|P46608|HSBH1_SOYBN Homeobox protein SBH1; TrEMBL-Plants: tr|A0A151SU49|A0A151SU49_CAJCA Homeobox protein SBH1; Found in the gene: LotjaGi4g1v0010900 | 23 | ||
| – | Homeobox protein knotted-1, putative; TAIR: AT5G25220.1 homeobox protein knotted-1-like 3; Swiss-Prot: sp|P48000|KNAT3_ARATH Homeobox protein knotted-1-like 3; TrEMBL-Plants: tr|V7CDZ8|V7CDZ8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0282700 | 22 | ||
| – | Homeobox protein knotted-1, putative; TAIR: AT5G25220.2 homeobox protein knotted-1-like 3; Swiss-Prot: sp|P48000|KNAT3_ARATH Homeobox protein knotted-1-like 3; TrEMBL-Plants: tr|V7CDZ8|V7CDZ8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0282700 | 22 | ||
| – | Homeobox protein knotted-1, putative; TAIR: AT5G25220.1 homeobox protein knotted-1-like 3; Swiss-Prot: sp|P48000|KNAT3_ARATH Homeobox protein knotted-1-like 3; TrEMBL-Plants: tr|V7CDZ8|V7CDZ8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0282700 | 22 | ||
| – | Homeobox protein knotted-1, putative; TAIR: AT5G25220.2 homeobox protein knotted-1-like 3; Swiss-Prot: sp|P48000|KNAT3_ARATH Homeobox protein knotted-1-like 3; TrEMBL-Plants: tr|V7CDZ8|V7CDZ8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0282700 | 22 | ||
| – | Homeobox protein knotted-1-like 1; TAIR: AT4G08150.1 homeobox knotted-like protein; Swiss-Prot: sp|O04135|KNAP2_MALDO Homeobox protein knotted-1-like 2; TrEMBL-Plants: tr|I1M8Y1|I1M8Y1_SOYBN KNOX-like DNA-binding protein; Found in the gene: LotjaGi5g1v0039100 | 24 | ||
| – | Homeobox protein knotted-1-like 1; TAIR: AT1G70510.1 homeobox knotted-like protein; Swiss-Prot: sp|Q9FP29|KNOS1_ORYSJ Homeobox protein knotted-1-like 1; TrEMBL-Plants: tr|I3SV38|I3SV38_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0230100 | 24 | ||
| – | Homeobox protein knotted-1, putative; TAIR: AT5G25220.1 homeobox protein knotted-1-like 3; Swiss-Prot: sp|P48000|KNAT3_ARATH Homeobox protein knotted-1-like 3; TrEMBL-Plants: tr|A0A0H3WB94|A0A0H3WB94_PEA Class II knotted-1-like 10 homeobox transcription factor; Found in the gene: LotjaGi6g1v0207800 | 22 | ||
| – | Homeobox-1; TAIR: AT1G62360.1 KNOX/ELK homeobox transcription factor; Swiss-Prot: sp|P46608|HSBH1_SOYBN Homeobox protein SBH1; TrEMBL-Plants: tr|A0A0S3S3Z4|A0A0S3S3Z4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0289900 | 23 | ||
| – | Homeobox transcription factor KN4; TAIR: AT1G62360.1 KNOX/ELK homeobox transcription factor; Swiss-Prot: sp|P46608|HSBH1_SOYBN Homeobox protein SBH1; TrEMBL-Plants: tr|A0A151T6Q4|A0A151T6Q4_CAJCA Homeobox protein SBH1; Found in the gene: LotjaGi6g1v0289900 | 17 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd00086 | CDD | 1 | 3.57 |