Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj6g3v1093250.1

Overview

Field Value
Gene ID Lj6g3v1093250
Transcript ID Lj6g3v1093250.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: NEDD8 ultimate buster 1-like [Glycine max] gi|356530579|ref|XP_003533858.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12948
1 550 550 3.70E-207 –
PANTHER
PTHR12948:SF3
1 550 550 3.70E-207 –
SUPERFAMILY
SSF54236
21 73 53 1.95E-06
IPR029071
CDD
cd01769
22 72 51 2.25E-05 –
ProSiteProfiles
PS50053
23 72 50 9.918
IPR000626
Gene3D
G3DSA:3.10.20.90
23 72 50 7.90E-06 –
SUPERFAMILY
SSF46934
274 320 47 2.36E-09
IPR009060
Gene3D
G3DSA:1.10.8.10
277 320 44 1.30E-08 –
ProSiteProfiles
PS50030
280 320 41 11.848
IPR015940
SMART
SM00165
282 319 38 0.0015
IPR015940
Gene3D
G3DSA:1.10.8.10
348 391 44 7.70E-07 –
SUPERFAMILY
SSF46934
352 392 41 2.44E-07
IPR009060
ProSiteProfiles
PS50030
352 392 41 11.438
IPR015940
SMART
SM00165
354 391 38 0.15
IPR015940
CDD
cd14270
358 387 30 2.97E-04 –
MobiDBLite
mobidb-lite
384 416 33 – –
Coils
Coil
395 415 21 – –
SUPERFAMILY
SSF46934
397 448 52 7.24E-05
IPR009060
ProSiteProfiles
PS50030
410 437 28 8.571
IPR015940
Gene3D
G3DSA:1.10.8.10
412 440 29 4.10E-05 –
SMART
SM00165
414 450 37 0.22
IPR015940
MobiDBLite
mobidb-lite
455 484 30 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj6g3v1093250.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1093250.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.