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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1093460 |
| Transcript ID | Lj6g3v1093460.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat superfamily protein [Theobroma cacao] gi|508722776|gb|EOY14673.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 39 | 59 | 21 | 3.60E-286 | – | |
| PANTHER | 39 | 59 | 21 | 3.60E-286 | – | |
| Gene3D | 88 | 151 | 64 | 3.40E-06 | ||
| PANTHER | 91 | 101 | 11 | 3.60E-286 | – | |
| PANTHER | 91 | 101 | 11 | 3.60E-286 | – | |
| ProSiteProfiles | 99 | 133 | 35 | 6.939 | ||
| PANTHER | 136 | 455 | 320 | 3.60E-286 | – | |
| PANTHER | 136 | 455 | 320 | 3.60E-286 | – | |
| ProSiteProfiles | 154 | 188 | 35 | 9.361 | ||
| Pfam | 160 | 185 | 26 | 0.032 | ||
| SUPERFAMILY | 171 | 334 | 164 | 7.96E-08 | ||
| ProSiteProfiles | 189 | 223 | 35 | 8.385 | ||
| Gene3D | 192 | 353 | 162 | 3.40E-06 | ||
| Pfam | 220 | 252 | 33 | 5.00E-10 | ||
| ProSiteProfiles | 224 | 258 | 35 | 12.518 | ||
| TIGRFAM | 226 | 260 | 35 | 3.30E-08 | ||
| Pfam | 258 | 307 | 50 | 2.30E-14 | ||
| ProSiteProfiles | 259 | 293 | 35 | 11.29 | ||
| TIGRFAM | 261 | 294 | 34 | 4.70E-07 | ||
| ProSiteProfiles | 294 | 328 | 35 | 10.238 | ||
| TIGRFAM | 296 | 318 | 23 | 1.50E-05 | ||
| Pfam | 330 | 357 | 28 | 7.20E-06 | ||
| ProSiteProfiles | 330 | 364 | 35 | 11.707 | ||
| TIGRFAM | 333 | 365 | 33 | 1.40E-06 | ||
| Pfam | 361 | 393 | 33 | 2.60E-10 | ||
| ProSiteProfiles | 365 | 399 | 35 | 12.923 | ||
| Gene3D | 367 | 547 | 181 | 5.50E-07 | ||
| TIGRFAM | 367 | 401 | 35 | 3.30E-10 | ||
| Pfam | 399 | 447 | 49 | 4.90E-17 | ||
| ProSiteProfiles | 400 | 434 | 35 | 13.044 | ||
| TIGRFAM | 404 | 436 | 33 | 5.40E-08 | ||
| SUPERFAMILY | 407 | 564 | 158 | 7.96E-08 | ||
| ProSiteProfiles | 435 | 469 | 35 | 11.816 | ||
| TIGRFAM | 437 | 471 | 35 | 7.90E-09 | ||
| ProSiteProfiles | 470 | 504 | 35 | 9.251 | ||
| TIGRFAM | 472 | 502 | 31 | 4.00E-04 | ||
| Pfam | 472 | 502 | 31 | 0.0035 | ||
| PANTHER | 504 | 643 | 140 | 3.60E-286 | – | |
| PANTHER | 504 | 643 | 140 | 3.60E-286 | – | |
| ProSiteProfiles | 505 | 539 | 35 | 13 | ||
| Pfam | 505 | 553 | 49 | 1.10E-15 | ||
| TIGRFAM | 508 | 540 | 33 | 8.20E-11 | ||
| ProSiteProfiles | 540 | 574 | 35 | 11.192 | ||
| Pfam | 574 | 622 | 49 | 5.20E-12 | ||
| ProSiteProfiles | 575 | 609 | 35 | 10.161 | ||
| TIGRFAM | 578 | 611 | 34 | 6.20E-06 | ||
| ProSiteProfiles | 610 | 644 | 35 | 11.937 | ||
| TIGRFAM | 612 | 645 | 34 | 8.80E-07 | ||
| ProSiteProfiles | 645 | 679 | 35 | 6.675 | ||
| Pfam | 714 | 761 | 48 | 6.70E-11 | ||
| ProSiteProfiles | 715 | 749 | 35 | 11.093 | ||
| TIGRFAM | 718 | 750 | 33 | 2.90E-06 | ||
| PANTHER | 749 | 855 | 107 | 3.60E-286 | – | |
| PANTHER | 749 | 855 | 107 | 3.60E-286 | – | |
| ProSiteProfiles | 750 | 784 | 35 | 11.4 | ||
| TIGRFAM | 752 | 786 | 35 | 1.40E-06 | ||
| Gene3D | 783 | 812 | 30 | 5.50E-07 | ||
| Pfam | 784 | 833 | 50 | 1.00E-18 | ||
| ProSiteProfiles | 785 | 819 | 35 | 13.91 | ||
| TIGRFAM | 788 | 821 | 34 | 7.10E-09 | ||
| ProSiteProfiles | 820 | 854 | 35 | 13.165 | ||
| TIGRFAM | 822 | 855 | 34 | 4.30E-09 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v1093460.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1093460.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.