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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1094850 |
| Transcript ID | Lj6g3v1094850.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: regulator of nonsense transcripts 2-like [Glycine max] gi|356556505|ref|XP_003546565.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | – | – | |
| Phobius | 1 | 167 | 167 | – | – | |
| PANTHER | 14 | 459 | 446 | 0 | – | |
| Coils | 17 | 37 | 21 | – | – | |
| SMART | 62 | 284 | 223 | 0.22 | ||
| Coils | 62 | 89 | 28 | – | – | |
| Pfam | 64 | 201 | 138 | 2.50E-05 | ||
| SUPERFAMILY | 81 | 195 | 115 | 3.65E-10 | ||
| Phobius | 168 | 188 | 21 | – | – | |
| Phobius | 189 | 1208 | 1020 | – | – | |
| MobiDBLite | 317 | 346 | 30 | – | – | |
| MobiDBLite | 382 | 484 | 103 | – | – | |
| Coils | 433 | 453 | 21 | – | – | |
| PANTHER | 489 | 1207 | 719 | 0 | – | |
| SUPERFAMILY | 490 | 684 | 195 | 1.44E-55 | ||
| SMART | 493 | 681 | 189 | 2.00E-48 | ||
| Pfam | 496 | 680 | 185 | 2.30E-31 | ||
| Gene3D | 496 | 686 | 191 | 7.30E-51 | ||
| Coils | 564 | 584 | 21 | – | – | |
| SUPERFAMILY | 691 | 916 | 226 | 2.88E-62 | ||
| Gene3D | 691 | 911 | 221 | 4.80E-68 | ||
| SMART | 696 | 897 | 202 | 3.70E-41 | ||
| Pfam | 699 | 891 | 193 | 6.90E-38 | ||
| MobiDBLite | 922 | 1033 | 112 | – | – | |
| Pfam | 1011 | 1147 | 137 | 1.70E-31 | ||
| MobiDBLite | 1070 | 1092 | 23 | – | – | |
| MobiDBLite | 1154 | 1208 | 55 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v1094850.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1094850.1, powered by CORGI.
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