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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1317320 |
| Transcript ID | Lj6g3v1317320.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: calcium-transporting ATPase 8, plasma membrane-type-like [Glycine max] gi|356530348|ref|XP_003533744.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 16 | 16 | – | – | |
| PANTHER | 1 | 724 | 724 | 0 | – | |
| PANTHER | 1 | 724 | 724 | 0 | – | |
| TIGRFAM | 1 | 852 | 852 | 9.30E-289 | ||
| Phobius | 1 | 1 | 1 | – | – | |
| SUPERFAMILY | 2 | 58 | 57 | 2.75E-103 | – | |
| Phobius | 2 | 12 | 11 | – | – | |
| Phobius | 13 | 16 | 4 | – | – | |
| Phobius | 17 | 25 | 9 | – | – | |
| TMHMM | 20 | 40 | 21 | – | – | |
| PRINTS | 25 | 45 | 21 | 2.50E-10 | – | |
| Phobius | 26 | 43 | 18 | – | – | |
| Pfam | 27 | 273 | 247 | 1.10E-42 | ||
| Phobius | 44 | 173 | 130 | – | – | |
| SUPERFAMILY | 60 | 155 | 96 | 9.94E-24 | – | |
| Gene3D | 100 | 159 | 60 | 9.10E-158 | ||
| PRINTS | 106 | 120 | 15 | 5.50E-35 | – | |
| TMHMM | 136 | 158 | 23 | – | – | |
| SUPERFAMILY | 158 | 276 | 119 | 2.75E-103 | – | |
| TMHMM | 173 | 195 | 23 | – | – | |
| Phobius | 174 | 194 | 21 | – | – | |
| Phobius | 195 | 227 | 33 | – | – | |
| TIGRFAM | 223 | 305 | 83 | 6.50E-22 | ||
| Phobius | 228 | 254 | 27 | – | – | |
| TMHMM | 228 | 250 | 23 | – | – | |
| Phobius | 255 | 647 | 393 | – | – | |
| Gene3D | 272 | 488 | 217 | 6.70E-47 | ||
| PRINTS | 275 | 296 | 22 | 2.50E-10 | – | |
| Pfam | 279 | 602 | 324 | 1.10E-15 | – | |
| SUPERFAMILY | 280 | 300 | 21 | 7.89E-59 | ||
| PRINTS | 282 | 296 | 15 | 5.50E-35 | – | |
| ProSitePatterns | 284 | 290 | 7 | – | ||
| SUPERFAMILY | 288 | 493 | 206 | 2.11E-41 | ||
| PRINTS | 399 | 417 | 19 | 2.50E-10 | – | |
| SUPERFAMILY | 430 | 693 | 264 | 7.89E-59 | ||
| PRINTS | 481 | 492 | 12 | 5.50E-35 | – | |
| PRINTS | 503 | 513 | 11 | 5.50E-35 | – | |
| TIGRFAM | 555 | 668 | 114 | 3.30E-32 | ||
| Gene3D | 567 | 851 | 285 | 9.10E-158 | ||
| PRINTS | 588 | 607 | 20 | 5.50E-35 | – | |
| PRINTS | 612 | 624 | 13 | 5.50E-35 | – | |
| SUPERFAMILY | 638 | 852 | 215 | 2.75E-103 | – | |
| Phobius | 648 | 668 | 21 | – | – | |
| Phobius | 669 | 679 | 11 | – | – | |
| Pfam | 673 | 849 | 177 | 1.20E-45 | ||
| Phobius | 680 | 699 | 20 | – | – | |
| Phobius | 700 | 719 | 20 | – | – | |
| Phobius | 720 | 739 | 20 | – | – | |
| Phobius | 740 | 795 | 56 | – | – | |
| PANTHER | 740 | 874 | 135 | 0 | – | |
| PANTHER | 740 | 874 | 135 | 0 | – | |
| TMHMM | 795 | 817 | 23 | – | – | |
| Phobius | 796 | 817 | 22 | – | – | |
| Phobius | 818 | 828 | 11 | – | – | |
| Phobius | 829 | 850 | 22 | – | – | |
| TMHMM | 830 | 852 | 23 | – | – | |
| Phobius | 851 | 888 | 38 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Calcium-transporting ATPase activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Calcium ion transmembrane transport | A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. |
Expression pattern of Lj6g3v1317320.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1317320.1, powered by CORGI.
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