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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1331890 |
| Transcript ID | Lj6g3v1331890.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356556240|ref|XP_003546434.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 59 | 59 | – | – | |
| Phobius | 1 | 301 | 301 | – | – | |
| PANTHER | 38 | 266 | 229 | 5.20E-130 | – | |
| PANTHER | 38 | 266 | 229 | 5.20E-130 | – | |
| Gene3D | 54 | 119 | 66 | 7.10E-18 | ||
| SUPERFAMILY | 58 | 119 | 62 | 5.99E-14 | ||
| SMART | 63 | 136 | 74 | 8.00E-11 | ||
| ProSiteProfiles | 64 | 131 | 68 | 14.99 | ||
| CDD | 66 | 135 | 70 | 1.37E-19 | – | |
| Pfam | 67 | 123 | 57 | 4.00E-13 | ||
| SMART | 156 | 231 | 76 | 2.50E-09 | ||
| SUPERFAMILY | 156 | 237 | 82 | 6.65E-11 | ||
| ProSiteProfiles | 157 | 226 | 70 | 12.601 | ||
| Gene3D | 158 | 232 | 75 | 3.70E-15 | ||
| CDD | 159 | 227 | 69 | 1.74E-15 | – | |
| Pfam | 171 | 226 | 56 | 1.20E-09 | ||
| TMHMM | 300 | 322 | 23 | – | – | |
| Phobius | 302 | 322 | 21 | – | – | |
| Phobius | 323 | 323 | 1 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of Lj6g3v1331890.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1331890.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.