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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1392450 |
| Transcript ID | Lj6g3v1392450.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like isoform X1 [Cicer arietinum] gi|502085347|ref|XP_004487896.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 17 | 17 | – | – | |
| MobiDBLite | 1 | 33 | 33 | – | – | |
| PANTHER | 11 | 42 | 32 | 0 | – | |
| PANTHER | 11 | 42 | 32 | 0 | – | |
| ProSiteProfiles | 35 | 69 | 35 | 6.095 | ||
| ProSiteProfiles | 70 | 104 | 35 | 5.053 | ||
| PANTHER | 90 | 369 | 280 | 0 | – | |
| PANTHER | 90 | 369 | 280 | 0 | – | |
| ProSiteProfiles | 106 | 136 | 31 | 7.596 | ||
| Pfam | 111 | 136 | 26 | 0.19 | ||
| ProSiteProfiles | 137 | 171 | 35 | 10.709 | ||
| Pfam | 139 | 169 | 31 | 6.00E-04 | ||
| TIGRFAM | 139 | 172 | 34 | 2.20E-04 | ||
| ProSiteProfiles | 207 | 237 | 31 | 7.322 | ||
| Pfam | 212 | 233 | 22 | 0.062 | ||
| SUPERFAMILY | 213 | 272 | 60 | 9.87E-06 | ||
| Gene3D | 216 | 269 | 54 | 7.00E-11 | ||
| ProSiteProfiles | 238 | 272 | 35 | 11.97 | ||
| Pfam | 240 | 270 | 31 | 1.20E-05 | ||
| TIGRFAM | 240 | 273 | 34 | 2.70E-07 | ||
| ProSiteProfiles | 309 | 339 | 31 | 6.851 | ||
| ProSiteProfiles | 340 | 375 | 36 | 9.624 | ||
| Pfam | 340 | 388 | 49 | 6.40E-08 | ||
| TIGRFAM | 343 | 376 | 34 | 2.20E-04 | ||
| ProSiteProfiles | 376 | 410 | 35 | 6.533 | ||
| PANTHER | 406 | 738 | 333 | 0 | – | |
| PANTHER | 406 | 738 | 333 | 0 | – | |
| Gene3D | 409 | 438 | 30 | 7.00E-11 | ||
| ProSiteProfiles | 411 | 441 | 31 | 7.958 | ||
| Pfam | 416 | 443 | 28 | 0.05 | ||
| ProSiteProfiles | 442 | 472 | 31 | 10.391 | ||
| TIGRFAM | 444 | 471 | 28 | 7.80E-06 | ||
| Pfam | 444 | 471 | 28 | 5.60E-07 | ||
| ProSiteProfiles | 523 | 553 | 31 | 6.73 | ||
| Pfam | 528 | 554 | 27 | 0.32 | ||
| ProSiteProfiles | 554 | 584 | 31 | 10.611 | ||
| SUPERFAMILY | 555 | 591 | 37 | 9.87E-06 | ||
| Pfam | 556 | 583 | 28 | 2.30E-08 | ||
| TIGRFAM | 556 | 584 | 29 | 4.50E-06 | ||
| Gene3D | 557 | 727 | 171 | 7.00E-11 | ||
| Pfam | 587 | 642 | 56 | 0.0021 | ||
| ProSiteProfiles | 594 | 629 | 36 | 9.032 | ||
| TIGRFAM | 596 | 630 | 35 | 1.30E-04 | ||
| ProSiteProfiles | 630 | 660 | 31 | 8.331 | ||
| SUPERFAMILY | 681 | 726 | 46 | 9.87E-06 | ||
| ProSiteProfiles | 697 | 731 | 35 | 8.342 | ||
| Pfam | 701 | 729 | 29 | 0.0059 | ||
| Pfam | 733 | 857 | 125 | 4.60E-48 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj6g3v1392450.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1392450.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.