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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1392470 |
| Transcript ID | Lj6g3v1392470.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g20090-like [Glycine max] gi|356532610|ref|XP_003534864.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 130 | 122 | 9.10E-265 | – | |
| PANTHER | 9 | 130 | 122 | 9.10E-265 | – | |
| ProSiteProfiles | 65 | 99 | 35 | 5.777 | ||
| Coils | 75 | 102 | 28 | – | – | |
| ProSiteProfiles | 100 | 130 | 31 | 6.116 | ||
| Pfam | 107 | 128 | 22 | 0.088 | ||
| SUPERFAMILY | 135 | 384 | 250 | 8.47E-05 | ||
| ProSiteProfiles | 136 | 171 | 36 | 7.794 | ||
| Gene3D | 145 | 307 | 163 | 2.10E-10 | ||
| Pfam | 168 | 197 | 30 | 7.40E-08 | ||
| PANTHER | 168 | 636 | 469 | 9.10E-265 | – | |
| PANTHER | 168 | 636 | 469 | 9.10E-265 | – | |
| ProSiteProfiles | 172 | 206 | 35 | 10.753 | ||
| TIGRFAM | 175 | 208 | 34 | 7.20E-07 | ||
| Pfam | 202 | 235 | 34 | 9.30E-15 | ||
| ProSiteProfiles | 207 | 241 | 35 | 13.767 | ||
| TIGRFAM | 209 | 242 | 34 | 1.40E-10 | ||
| Pfam | 238 | 269 | 32 | 6.40E-08 | ||
| ProSiteProfiles | 242 | 276 | 35 | 11.772 | ||
| TIGRFAM | 245 | 278 | 34 | 2.20E-07 | ||
| Pfam | 276 | 325 | 50 | 1.80E-16 | ||
| ProSiteProfiles | 277 | 311 | 35 | 13.351 | ||
| TIGRFAM | 279 | 312 | 34 | 1.30E-11 | ||
| ProSiteProfiles | 312 | 346 | 35 | 8.528 | ||
| Gene3D | 344 | 459 | 116 | 2.10E-10 | ||
| Pfam | 347 | 395 | 49 | 3.40E-16 | ||
| ProSiteProfiles | 347 | 381 | 35 | 13.954 | ||
| SUPERFAMILY | 349 | 558 | 210 | 1.02E-09 | – | |
| TIGRFAM | 349 | 383 | 35 | 1.90E-12 | ||
| ProSiteProfiles | 382 | 416 | 35 | 13.033 | ||
| TIGRFAM | 384 | 417 | 34 | 1.70E-08 | ||
| Pfam | 412 | 445 | 34 | 1.70E-06 | ||
| ProSiteProfiles | 417 | 451 | 35 | 10.293 | ||
| TIGRFAM | 419 | 452 | 34 | 3.90E-07 | ||
| Pfam | 452 | 500 | 49 | 5.10E-15 | ||
| ProSiteProfiles | 452 | 486 | 35 | 12.627 | ||
| TIGRFAM | 454 | 488 | 35 | 1.40E-10 | ||
| ProSiteProfiles | 487 | 521 | 35 | 10.216 | ||
| TIGRFAM | 489 | 517 | 29 | 1.70E-05 | ||
| Gene3D | 522 | 547 | 26 | 2.10E-10 | ||
| Pfam | 523 | 570 | 48 | 1.00E-10 | ||
| ProSiteProfiles | 524 | 558 | 35 | 11.422 | ||
| TIGRFAM | 527 | 559 | 33 | 1.10E-06 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v1392470.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1392470.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.