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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1392530 |
| Transcript ID | Lj6g3v1392530.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: allantoate deiminase, chloroplastic-like [Glycine max] gi|356530191|ref|XP_003533667.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | – | – | |
| PANTHER | 1 | 306 | 306 | 0 | – | |
| SignalP | 1 | 28 | 28 | – | – | |
| PANTHER | 1 | 306 | 306 | 0 | – | |
| SignalP | 1 | 26 | 26 | – | – | |
| Phobius | 1 | 12 | 12 | – | – | |
| Phobius | 13 | 21 | 9 | – | – | |
| Phobius | 22 | 26 | 5 | – | – | |
| Phobius | 27 | 481 | 455 | – | – | |
| SUPERFAMILY | 44 | 269 | 226 | 7.18E-69 | – | |
| Gene3D | 47 | 271 | 225 | 1.90E-93 | – | |
| TIGRFAM | 52 | 473 | 422 | 7.90E-103 | ||
| CDD | 54 | 474 | 421 | 6.67E-153 | ||
| ProSitePatterns | 118 | 127 | 10 | – | ||
| Pfam | 119 | 469 | 351 | 1.80E-22 | ||
| Pfam | 259 | 369 | 111 | 1.90E-05 | ||
| SUPERFAMILY | 259 | 389 | 131 | 5.23E-23 | ||
| Gene3D | 272 | 387 | 116 | 4.50E-35 | ||
| PANTHER | 324 | 481 | 158 | 0 | – | |
| PANTHER | 324 | 481 | 158 | 0 | – | |
| SUPERFAMILY | 408 | 480 | 73 | 7.18E-69 | – | |
| Gene3D | 423 | 480 | 58 | 1.90E-93 | – | |
| Coils | 477 | 481 | 5 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Metallopeptidase activity | Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. | ||
| Molecular function | Hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines | Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amidine, a compound of the form R-C(=NH)-NH2. |
Expression pattern of Lj6g3v1392530.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1392530.1, powered by CORGI.
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