Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | Lj6g3v1525950 |
| Transcript ID | Lj6g3v1525950.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: importin subunit alpha-1-like [Glycine max] gi|356556046|ref|XP_003546338.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 58 | 58 | 15.779 | ||
| PANTHER | 1 | 531 | 531 | 0 | – | |
| PANTHER | 1 | 531 | 531 | 0 | – | |
| PIRSF | 2 | 530 | 529 | 4.80E-218 | ||
| Gene3D | 11 | 498 | 488 | 7.90E-140 | ||
| SUPERFAMILY | 12 | 501 | 490 | 3.07E-132 | ||
| Pfam | 12 | 96 | 85 | 3.70E-25 | ||
| MobiDBLite | 38 | 57 | 20 | – | – | |
| SMART | 106 | 147 | 42 | 2.80E-08 | ||
| Pfam | 107 | 147 | 41 | 1.50E-09 | ||
| CDD | 111 | 232 | 122 | 2.39E-35 | – | |
| ProSiteProfiles | 117 | 160 | 44 | 10.482 | ||
| SMART | 149 | 189 | 41 | 2.70E-11 | ||
| Pfam | 149 | 188 | 40 | 1.60E-13 | ||
| ProSiteProfiles | 160 | 202 | 43 | 12.127 | ||
| SMART | 190 | 232 | 43 | 0.043 | ||
| Pfam | 191 | 232 | 42 | 1.10E-08 | ||
| SMART | 234 | 273 | 40 | 0.038 | ||
| ProSiteProfiles | 244 | 286 | 43 | 8.592 | ||
| Pfam | 245 | 272 | 28 | 1.40E-06 | ||
| CDD | 245 | 358 | 114 | 5.94E-31 | – | |
| SMART | 275 | 315 | 41 | 3.90E-06 | ||
| Pfam | 276 | 314 | 39 | 1.70E-08 | ||
| SMART | 317 | 358 | 42 | 9.40E-09 | ||
| Pfam | 318 | 358 | 41 | 2.20E-10 | ||
| CDD | 322 | 441 | 120 | 3.07E-24 | – | |
| ProSiteProfiles | 328 | 371 | 44 | 10.342 | ||
| SMART | 360 | 400 | 41 | 1.00E-09 | ||
| Pfam | 360 | 399 | 40 | 2.70E-12 | ||
| ProSiteProfiles | 371 | 399 | 29 | 9.152 | ||
| SMART | 403 | 443 | 41 | 3.00E-04 | ||
| Pfam | 458 | 502 | 45 | 2.60E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Protein import into nucleus | The directed movement of a protein from the cytoplasm to the nucleus. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Nuclear import signal receptor activity | Combining with a nuclear import signal (NIS) on a cargo to be transported, to mediate transport of the cargo through the nuclear pore, from the cytoplasm to the nuclear lumen. The cargo can be either a RNA or a protein. |
Expression pattern of Lj6g3v1525950.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…
A list of the top 25 highly co-expressed genes of Lj6g3v1525950.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.