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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1586670 |
| Transcript ID | Lj6g3v1586670.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DEAD-box ATP-dependent RNA helicase 40-like [Cicer arietinum] gi|502080278|ref|XP_004486514.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 1040 | 1040 | – | – | |
| MobiDBLite | 1 | 28 | 28 | – | – | |
| SUPERFAMILY | 14 | 53 | 40 | 5.48E-08 | ||
| Gene3D | 18 | 52 | 35 | 1.10E-04 | – | |
| ProSiteProfiles | 20 | 54 | 35 | 11.448 | ||
| SMART | 21 | 54 | 34 | 6.20E-07 | ||
| Pfam | 22 | 52 | 31 | 4.80E-07 | ||
| CDD | 23 | 54 | 32 | 0.00162295 | – | |
| ProSitePatterns | 26 | 52 | 27 | – | ||
| MobiDBLite | 49 | 207 | 159 | – | – | |
| MobiDBLite | 224 | 295 | 72 | – | – | |
| MobiDBLite | 326 | 346 | 21 | – | – | |
| PANTHER | 366 | 423 | 58 | 0 | – | |
| PANTHER | 366 | 423 | 58 | 0 | – | |
| PANTHER | 466 | 985 | 520 | 0 | – | |
| PANTHER | 466 | 985 | 520 | 0 | – | |
| Gene3D | 485 | 720 | 236 | 1.50E-85 | ||
| ProSiteProfiles | 501 | 529 | 29 | 11.265 | ||
| CDD | 503 | 707 | 205 | 8.95E-94 | – | |
| SMART | 520 | 723 | 204 | 1.00E-58 | ||
| Pfam | 525 | 695 | 171 | 2.70E-47 | ||
| ProSiteProfiles | 532 | 706 | 175 | 30.516 | ||
| SUPERFAMILY | 572 | 855 | 284 | 4.03E-70 | ||
| CDD | 720 | 848 | 129 | 1.75E-40 | – | |
| Gene3D | 721 | 877 | 157 | 4.20E-55 | ||
| Pfam | 732 | 840 | 109 | 3.30E-31 | ||
| ProSiteProfiles | 735 | 879 | 145 | 24.083 | ||
| SMART | 760 | 840 | 81 | 9.90E-33 | ||
| MobiDBLite | 889 | 1023 | 135 | – | – | |
| Phobius | 1041 | 1065 | 25 | – | – | |
| TMHMM | 1043 | 1065 | 23 | – | – | |
| Phobius | 1066 | 1091 | 26 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of Lj6g3v1586670.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1586670.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.