Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj6g3v1791970.1

Overview

Field Value
Gene ID Lj6g3v1791970
Transcript ID Lj6g3v1791970.1
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: katanin p60 ATPase-containing subunit A1-like [Cicer arietinum] gi|502079223|ref|XP_004486193.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Coils
Coil
85 105 21 – –
MobiDBLite
mobidb-lite
249 270 22 – –
PANTHER
PTHR23073:SF29
270 563 294 6.70E-152 –
PANTHER
PTHR23073
270 563 294 6.70E-152 –
SUPERFAMILY
SSF52540
295 521 227 1.04E-47
IPR027417
Gene3D
G3DSA:3.40.50.300
295 481 187 8.00E-49
IPR027417
CDD
cd00009
337 473 137 2.10E-19 –
SMART
SM00382
340 475 136 5.10E-17
IPR003593
Pfam
PF00004
344 472 129 3.10E-34
IPR003959
ProSitePatterns
PS00674
445 464 20 –
IPR003960
Gene3D
G3DSA:1.10.8.60
482 525 44 5.00E-04 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 33

Expression data

Expression pattern

Expression pattern of Lj6g3v1791970.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1791970.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.