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Lj6g3v1995960.1

Overview

Field Value
Gene ID Lj6g3v1995960
Transcript ID Lj6g3v1995960.1
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR18968
1 580 580 0 –
PANTHER
PTHR18968:SF132
1 580 580 0 –
PIRSF
PIRSF036565
15 575 561 1.80E-206
IPR012110
Gene3D
G3DSA:3.40.50.970
19 199 181 4.50E-78
IPR029061
SUPERFAMILY
SSF52518
19 197 179 3.58E-44
IPR029061
Pfam
PF02776
19 185 167 4.00E-35
IPR012001
CDD
cd07038
23 183 161 8.56E-90 –
SUPERFAMILY
SSF52467
205 357 153 2.62E-33
IPR029035
Gene3D
G3DSA:3.40.50.1220
207 366 160 5.60E-54
IPR029035
Pfam
PF00205
217 333 117 1.80E-22
IPR012000
Gene3D
G3DSA:3.40.50.970
376 566 191 6.00E-54
IPR029061
CDD
cd02005
381 563 183 5.25E-83 –
SUPERFAMILY
SSF52518
381 573 193 1.22E-41
IPR029061
Pfam
PF02775
426 551 126 1.40E-15
IPR011766

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000287
Molecular function Magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
Subterm of
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0016831
Molecular function Carboxy-lyase activity Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
Subterm of
GO:0030976
Molecular function Thiamine pyrophosphate binding Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj6g3v1995960.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1995960.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.