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Lj6g3v2116880.1

Overview

Field Value
Gene ID Lj6g3v2116880
Transcript ID Lj6g3v2116880.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: nitric oxide synthase-interacting protein-like [Cicer arietinum] gi|502077568|ref|XP_004485689.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13063
2 294 293 2.50E-137 –
PIRSF
PIRSF023577
2 292 291 1.20E-97
IPR016818
PANTHER
PTHR13063:SF10
2 294 293 2.50E-137
IPR016818
Pfam
PF15906
5 75 71 1.00E-16
IPR031790
SUPERFAMILY
SSF57850
25 77 53 8.84E-09 –
Gene3D
G3DSA:3.30.40.10
34 76 43 4.40E-09
IPR013083
SMART
SM00184
43 73 31 6.3
IPR001841
Coils
Coil
79 106 28 – –
Gene3D
G3DSA:3.30.40.10
175 196 22 4.40E-09
IPR013083
SUPERFAMILY
SSF57850
210 264 55 9.51E-09 –
Gene3D
G3DSA:3.30.40.10
211 265 55 7.60E-13
IPR013083
SMART
SM00184
214 255 42 0.053
IPR001841
Pfam
PF14634
214 257 44 1.30E-06
IPR001841
ProSiteProfiles
PS50089
214 256 43 10.394
IPR001841
CDD
cd00162
214 259 46 0.00279651 –
ProSitePatterns
PS00518
233 242 10 –
IPR017907

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0061630
Molecular function Ubiquitin protein ligase activity Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj6g3v2116880.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v2116880.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.