Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj6g3v2172040.1

Overview

Field Value
Gene ID Lj6g3v2172040
Transcript ID Lj6g3v2172040.1
Lotus japonicus genome version MG20 v3.0
Description RHL2 [Zea mays] gi|195647934|gb|ACG43435.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10848
1 220 220 1.50E-80
IPR002815
SUPERFAMILY
SSF56726
2 223 222 9.15E-58
IPR002815
PRINTS
PR01550
6 21 16 2.20E-31
IPR002815
Gene3D
G3DSA:3.40.1360.10
16 222 207 2.50E-62 –
CDD
cd00223
51 210 160 4.25E-58 –
PRINTS
PR01550
53 70 18 2.20E-31
IPR002815
PRINTS
PR01551
67 82 16 6.80E-07
IPR013048
PRINTS
PR01550
77 98 22 2.20E-31
IPR002815
PRINTS
PR01550
109 125 17 2.20E-31
IPR002815
PRINTS
PR01551
114 133 20 6.80E-07
IPR013048
PRINTS
PR01551
173 187 15 6.80E-07
IPR013048

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005694
Cellular component Chromosome A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
Subterm of
GO:0016889
Molecular function Endodeoxyribonuclease activity, producing 3'-phosphomonoesters Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acids by creating internal breaks to yield 3'-phosphomonoesters.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj6g3v2172040.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v2172040.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.