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Lj6g3v2218190.1

Overview

Field Value
Gene ID Lj6g3v2218190
Transcript ID Lj6g3v2218190.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] gi|356525874|ref|XP_003531546.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11895:SF92
1 225 225 1.40E-123 –
PANTHER
PTHR11895
1 225 225 1.40E-123
IPR000120
SUPERFAMILY
SSF75304
66 211 146 6.67E-15
IPR023631
Gene3D
G3DSA:3.90.1300.10
66 214 149 6.80E-18
IPR023631
Pfam
PF01425
78 208 131 1.00E-04
IPR023631
Gene3D
G3DSA:1.25.40.10
240 346 107 9.10E-34
IPR011990
SMART
SM00028
242 275 34 0.01
IPR019734
ProSiteProfiles
PS50293
242 343 102 22.196
IPR013026
ProSiteProfiles
PS50005
242 275 34 7.287
IPR019734
SUPERFAMILY
SSF48452
242 346 105 4.09E-29
IPR011990
SMART
SM00028
276 309 34 0.0038
IPR019734
ProSiteProfiles
PS50005
276 309 34 6.667
IPR019734
Pfam
PF13181
276 303 28 0.0069
IPR019734
ProSiteProfiles
PS50005
310 343 34 11.535
IPR019734
SMART
SM00028
310 343 34 4.50E-04
IPR019734

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004040
Molecular function Amidase activity Catalysis of the reaction: a monocarboxylic acid amide + H2O = a monocarboxylate + NH3.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 20

Expression data

Expression pattern

Expression pattern of Lj6g3v2218190.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v2218190.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.