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| Field | Value |
|---|---|
| Gene ID | Lj6g3v2270990 |
| Transcript ID | Lj6g3v2270990.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Rhomboid protease gluP [Medicago truncatula] gi|357452411|ref|XP_003596482.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | – | – | |
| Phobius | 20 | 38 | 19 | – | – | |
| Phobius | 39 | 129 | 91 | – | – | |
| PANTHER | 111 | 333 | 223 | 4.50E-147 | – | |
| PANTHER | 111 | 333 | 223 | 4.50E-147 | ||
| SUPERFAMILY | 125 | 306 | 182 | 7.32E-45 | – | |
| Gene3D | 129 | 302 | 174 | 1.60E-43 | ||
| Phobius | 130 | 148 | 19 | – | – | |
| TMHMM | 133 | 155 | 23 | – | – | |
| Phobius | 149 | 167 | 19 | – | – | |
| Pfam | 164 | 305 | 142 | 9.10E-40 | ||
| Phobius | 168 | 186 | 19 | – | – | |
| Phobius | 187 | 206 | 20 | – | – | |
| TMHMM | 207 | 225 | 19 | – | – | |
| Phobius | 207 | 225 | 19 | – | – | |
| Phobius | 226 | 230 | 5 | – | – | |
| TMHMM | 230 | 249 | 20 | – | – | |
| Phobius | 231 | 249 | 19 | – | – | |
| Phobius | 250 | 260 | 11 | – | – | |
| Phobius | 261 | 279 | 19 | – | – | |
| Phobius | 280 | 284 | 5 | – | – | |
| Phobius | 285 | 305 | 21 | – | – | |
| Phobius | 306 | 338 | 33 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj6g3v2270990.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v2270990.1, powered by CORGI.
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