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| Field | Value |
|---|---|
| Gene ID | Lj6g3v2273280 |
| Transcript ID | Lj6g3v2273280.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic-like [Glycine max] gi|356525958|ref|XP_003531588.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 21 | 21 | – | – | |
| Phobius | 1 | 9 | 9 | – | – | |
| Phobius | 1 | 28 | 28 | – | – | |
| ProSiteProfiles | 1 | 18 | 18 | 5 | – | |
| PANTHER | 5 | 370 | 366 | 9.80E-191 | – | |
| PANTHER | 5 | 370 | 366 | 9.80E-191 | – | |
| Phobius | 10 | 21 | 12 | – | – | |
| Phobius | 22 | 28 | 7 | – | – | |
| Phobius | 29 | 370 | 342 | – | – | |
| ProSiteProfiles | 70 | 100 | 31 | 5.349 | ||
| Gene3D | 135 | 345 | 211 | 4.90E-06 | ||
| Pfam | 139 | 186 | 48 | 2.60E-14 | ||
| ProSiteProfiles | 139 | 173 | 35 | 12.584 | ||
| TIGRFAM | 141 | 175 | 35 | 3.10E-09 | ||
| SUPERFAMILY | 150 | 310 | 161 | 1.73E-05 | – | |
| ProSiteProfiles | 174 | 209 | 36 | 8.966 | ||
| Pfam | 210 | 256 | 47 | 3.40E-08 | ||
| ProSiteProfiles | 210 | 244 | 35 | 10.611 | ||
| TIGRFAM | 212 | 246 | 35 | 2.70E-07 | ||
| ProSiteProfiles | 245 | 279 | 35 | 11.203 | ||
| TIGRFAM | 248 | 280 | 33 | 5.30E-05 | ||
| ProSiteProfiles | 280 | 314 | 35 | 8.374 | ||
| Pfam | 283 | 311 | 29 | 0.014 | ||
| ProSiteProfiles | 315 | 349 | 35 | 10.994 | ||
| Pfam | 318 | 363 | 46 | 5.30E-11 | ||
| TIGRFAM | 319 | 346 | 28 | 1.30E-05 | ||
| ProSiteProfiles | 350 | 370 | 21 | 6.917 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v2273280.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v2273280.3, powered by CORGI.
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