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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0004200 |
| Transcript ID | LotjaGi1g1v0004200.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P19143|PAL3_PHAVU Phenylalanine ammonia-lyase class 3; TrEMBL-Plants: tr|A0A0R4J2S3|A0A0R4J2S3_SOYBN Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0004200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:764590..770357) extracted from Lotus japonicus Gifu genome v1.2.
TAGCCTGCCAAGATTGACCCGGCCAAAAGTCAAGCACCTACCCATACACAAATTCTCCTCTGCTCGTGCTGTGTTGCTCC TACCCATTACTCACCAACCAATCAGTGAAGCGCCACCCTCTATTTAAGCTTAAAAAGCCATTGTTTCTCTACAACCTGAT CTGGTGATAGTGTATGAACATGGCGACCCAGAAAGCTAACCAAAGTGTGAGTGACACAGACCCTCTGAACTGGGAATCTG CGGCAAATTCACTCAAGGGTAGCTACTTTGACGAAGTGAAACGCATGGTGGCAGATTACCGGAAGCCAGTGATATGTCTA GGTGGGGGGGAGACACTAACTATATCCCAGGTAGCTGCTGTTGCTAACCATAACTTACAAGTTAAGGTTGGCCTCTCAGA GACAGCAAGGGCAGGAGTTGAGGCCAGCTGCGAGTGGATTATGGAAAACGTTAACAAAGGTACTGCCATTTATGGAGTCA CCACTGGCTTTGGTGCTGCCTCCAACAGACAAACCAACCAAGGCTTGGCTCTTCAGAAAGAGATGGTTAGGTGAGGTTCC ACTCTGCATTATAGATAACATATTGCTTTGATATGCTACATGATCCTTCATGTCAAAATTTTACATAATAGTGTCATGTT AAAATTTGATGTTAACTCTCTCTTCATACCTATTAAATGAGTGAGTGACAACTTATAGACATTTATGAAGAGAAAAAAAC ACATCAAGTTTCATGATACAATGTAATATGACATGAGAGGATCATAATCCGCAATTTCATAGACTACATACTAAATATTA TGTTGGCTGAACCATTTTTCCTTCCTAAGGTTTTTGAACTGCGCTATATTTGGCTTTGGAGCTGAGTTATCTCATACACT GCCCCAGTCAGCAACCAGAGCAGCTATGCTTGTGAGGGTTAATACCCTTCTTCAAGGGTATTCCGGTATTAGATTTGAAA TCTTAGAAGCTATCACCAAACTCCTCAACCATAATGTCACCCCTGTCTTGCCATTACGTGGTACAGTCACGGCTTCTGGT GATCTTATTCCTCTGTCCTACATTGTTGCATTGCTAATTGGTAGGCGAAACTCCAAAGCTGTTGGACCCTCTGGAGAGTC CCTCAATGCTAAGGAAGCTTTCAATTTAGCAGGTCTGAATTCTGGGTTCTTTGAGCTGAATCCCAAGGAAGGCGTTGCCC TTGTAAATGGCACAGCCGTTGGATCTGGCGTAGCTGCTGTGGTACTTTTTGAGACAAACATATTAGCTTTATTGTCAGTA GTTCTATCAGCAGTTTTTGCTGAAGTCATGCAGGGGAAGCCAGAATTTACGCACCATCTTATACACAAGCTCAAGTACCA TCCAGGTCAAATTGAGGCTGCTGCTATTATGGAACATATTTTAGATGGAAGCTCGTATATCAAATATGCTAAACTGCAGC AAGCAGATCCATCGCAGAAGCCTAGGAAAGATCGCTATGCTCTTCAAACTTCTCCTCAATGGCTTGGTCCACAGATTGAA GTCATCCGTTATTCGACCAAATCGATTGAAAGGGAGATAAATTCAGTGAATGACAATCCTTTGATTGATGTCACTGGGAA TAAGGTTTTGAATGGGGGTAATTTCCAAGGCACCCCAATTGGAGTTGCCATGGATAATGTACGTTTAGCTGTTGCTTCAA TTGGCAAACTCATCTTTGCCCAATTTACCGAGCTAGTGAATGACTTGTATAATAATGGTTTGCCATCAAATCTCTCAGCT GGTAGAAACCCAAGTCTGGATTATGGTTTTAAGGCATCTGAAGTTGCCATGGCTGCTTATTGTTCAGAACTCCAATATTT AGCAAATCCGGTAACGAGCCACGTGCAGAGTGCTGAACAGCACAACCAAGATGTGAACTCTTTGGGCTTAATTTCTGCAT GGAAAACCGTCGAAGCCGTTGAGATATTGAAGCTCATGTCTTCCACATACTTGGTTGCACTCTGCCAAGCTATTGACTTG AGGCATTTGGAAGAAATTTTTAAGAACACGGTCAGGAATACCATAAGCACGGTTGCAAAGAAGACATTATCCATAGAAGA CAAAGAAGAAATCAACCCATTTCGATTTTGTGAGAAAGATTTACTCAAAGTGGTTGAGAGAGAATATGTATTCTCCTACA TTGATGATCCATCCAACGTCATGTACCCACTGATGCCGAAACTAAAGCAGGTACTTTATGAGCAAGCACACATTAGTGCC ATTAATGACAAGAATGTGAGCTTGACAATCTTTGACAAGATTGGAGCTTTTGAGGATGAACTGAAGAATCTCTTCCCGAA GGAAGTTGAAAGTGCAAGGTTGGCTTATGAGAAGGGCAATCCAGCAATTCCAAACAGAATTAAGGAATGTAGGTCATACC CGCTGTACAAGTTTGTAAGGGAAGAATTAGGGACAGGGTTGCTGACCGGAGATAAGACTATCTCACCAGATGAGGACTTT GAAAAAGTATTTACAGCCGTGAGACAAGCAAGGATTGTTGACCCACTTCTGGAATGTCTTGAAGATTGGAATGGAGTTCC CATCCCAATATAATGTGTGATGTTAAACAATAACTAGCTGGCATATTTTTCTCATGTGTTATCAGCTTTAGGCTTTTATG AATAACTTGTTGAGAGAAACATGTGTAGCTTTTCTCTTGGTGTAATCCTTATCTATACAAATTATGCAGACTACTAATCA TCAAAAGCTAGCATGTCATCACCAAAGTTACATGAATCCACCCAACTTTGAGTAGAAAAATATTTACTCAAAATTTTTTT AGTGTAGTTTGGCATACTATATTACAGGATCCATTTTTGTCTCAGACTAAGACTGACTGATGGATTAGCTTCCAAGTTTT CTTTAAACATATATTTCCAAAAACTGCTATTCATTTTTGTTGCATTATTCAATATTTTACACATCGGGACGAATATATAC TGTGTTACAAGCAGTCTGCAATTGAGGTAGCAGAATACCGTTAATGAAAATGTCACTAACCTTATTAAGATAGATTTAAA TACCAAGAAGCACAGTAGAAAATAGAAATCATGTAGAAATCTAAAAGTAACCATTTAATTTTTTTTAATCAGTGTTTAAG TGAATAAGGGATGAGACAGTCTGAGCAATTACAACTTCCTCAAGCAACTTGATTAGACTAAAGTACATGAAACAAAATGA TATCAAACACTAGTTAAATGTTTAAATTTTAAACCACTTACAGAATACAGATAGAAGGGGAACAAACTGCAGATCAGTAT CTGTTTATCCACTTAATATGCTATAAAGAAATCAAGCTACAAAAAGAATTAAGTTATACCAATTGAGAAAAAATCCTCTT CCAGAGTGCCTTTTGCTTTGTTGATAGATAGCAAAGAGAGCCTCAATCTATCTTCACTGATGAGAACAAATAATGCACAA AGTAGAATGACATAAGGAAGCCAATGGTCCCGGTTGACAACATGATTGCAATTGCCATGAGCAGCGAATAGCCAAGATAA AGTATAGCAGAGATAGGTCCACTCAAACTCTGCAGGTCGAAAACCAAGTAGTTAATGGAGTATAAGAAGACATAAAGAGC AACGGAGCCTGATGCAAAGAATGCCTTCCACCACCACCGCCAATCTTCCACACAAAGATGCATATATGTGAGGACCACTG ACACTTCAGCACAAACAATAATCAGCAATAGAAGAACAATCGACAAGAAGCCAAAGACATAATAGAACCTCCCAAGCCAA ATACTGGAAAGGATAAAGAAAAGCTCAATGAAAAGGGTTCCAAACGGAAGAGTTCCAGCACCAAGAACAAGAAGCCATGA TGGGTATTTACGTGTTGGAATTTCCCTTGGAATCTGATTAGTTCGCACAGGAAATTCAATTTGTGGAGCTTTTGTCCCCA TAAATCCTCCAATGAGGGTAAGTGGCACTGAAATGCAGAACCACAGGAAGATCAACTCAAAATACAAGGAAATAGGAATA GCACCAGTACTTTTGCTGCTCCAGAGAATAAAATTCAGTCCTGTTAGAATAACAAACGCAATTCCAGGAAAAAAGCATGC GGCAAACCAGGAAATTGACCTCCACCCTTCTGAAGTTCCCTTAATGGTGCTCCAGAGACGTACACTGACATATCCTGCAG CACTTCCGAGGAAAAGATATAAAATTATCATCCCCGTTAGTAGCATTCCCCGTGAAGCAGGTGACATGAAACCAAGGGCG GCGAAAACAATAGTAACAGCTGCCATTCCAAGAATCTGAACTCCATCCCCAACCATCACACAGAGAAGCTTTGAGCAATC AGGCTCCCTAAATACATCACCCACAACAAGCTTCCATCCAGAAAGCTCCTCATTCATCTGAGCCTGTGTCTCTTTGTCCA TTTCCTCATACCTTGTCAAGTCCCTTCTCACAGTTCTTAAGAAAATGACAAAAACAATACCAGCTAGGAAAAAGATCACC ATAAGTGAATTCAGGATTGAGAACCAATGTACTCGTGCACCCTCCATCTTTAAATAAGCATCCCAACGCGACGGCCATCT TATATCACTTCTAACAAATTCAACTTCATATGTAAATGATATCCTCTCTTGTTCCCTAACCGCTTGGTACTTGTCAAGCT CAGCTGGGCAGCTTGTTCTAGACATTTCATCATACGTGTGGAGCTTTGTCATGGCTTCGGGATCGCGTTTAACACTACAA GGGACAACATGAAAGCCAACAATTTCATATCCAGATGCCTTATTCTTGTCAGCTTCAGAAATCACACCCATACCCTCCTC GCCGGTCCCGATGATTTCAACACCACTTCCTTCATACTCATGAACCAAGACTGTAAACTTGAGGTGGTTGATGATGTAAT CCGCACTGCCATCAGGTGGGGTGTACCCGACGGGGAAGCCGGTCCACTGGATTTTAACCCCATTTTGAGTGGCAAATCTC ATGACAGGCAGATTGTCAAGGATCATATTTACTTGATAGAGATCGTGAGTTCGCTGTTTGAGTAGCTTGACCTCGTTCTC GTTCAAGGGGGGTGTAGTGCAGAGGTAGACAGACTGATTGACATTCATGTGGAAAAGGTAAGGGGAGTTATCAATCTGGT CACCCATAAGGAGTTCGCCGAGATTCTCAGCACTTTTCTTAATCCCGCCAAGGGGTTGGCAATAAGGGAGGCTGTAGTAG CTGAAGGGAAGCTCAGTTTCAATGGAAGTCAAGGAATTAACCTTGGCATATATGGGATCTCCATTTGAGTAAGTGTGCAT GTAACTTCCAGGAAGATAAAAAGCATTGCTAAATTGAACAAAGACAATGAGGGAAATGCAAACCCAGCAGATCAAAGGGA TCTCCATTTGCGCAGAGTAGATGTTTGGGGAAATTAAGCTATGAGTCTAACGAAGCATTCAACGTCAAATCTACAACAGA ATAACAATATTTCAAAATGAGATGGCATCCAAAGATATAAAATTAAATGTAGGCTAAAGAATATGCGAGAATGATCAGAT CACAAGACATGCGTATGGGATAAACAAACAAATGAGAATGGCAAAGGGAATCAATGTAAAACAGCGATCATGAACAATGT ATAAAAAAGGAGAATAAAGTGTGCAATGAATCAATATTGTATTGTGAAAATGGAGAAAGGAGAAGGATGAGCTCACCGTG GAATGTGGCATGGCAATGGAGATTGGAGATTGGAGATGAGATCTCAACTGAAACTGAACGTAGCAGATGGAAATGGAAAT TAGTTATG
CDS sequence (LotjaGi1g1v0004200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACATGGCGACCCAGAAAGCTAACCAAAGTGTGAGTGACACAGACCCTCTGAACTGGGAATCTGCGGCAAATTCACT CAAGGGTAGCTACTTTGACGAAGTGAAACGCATGGTGGCAGATTACCGGAAGCCAGTGATATGTCTAGGTGGGGGGGAGA CACTAACTATATCCCAGGTAGCTGCTGTTGCTAACCATAACTTACAAGTTAAGGTTGGCCTCTCAGAGACAGCAAGGGCA GGAGTTGAGGCCAGCTGCGAGTGGATTATGGAAAACGTTAACAAAGGTACTGCCATTTATGGAGTCACCACTGGCTTTGG TGCTGCCTCCAACAGACAAACCAACCAAGGCTTGGCTCTTCAGAAAGAGATGGTTAGGTTTTTGAACTGCGCTATATTTG GCTTTGGAGCTGAGTTATCTCATACACTGCCCCAGTCAGCAACCAGAGCAGCTATGCTTGTGAGGGTTAATACCCTTCTT CAAGGGTATTCCGGTATTAGATTTGAAATCTTAGAAGCTATCACCAAACTCCTCAACCATAATGTCACCCCTGTCTTGCC ATTACGTGGTACAGTCACGGCTTCTGGTGATCTTATTCCTCTGTCCTACATTGTTGCATTGCTAATTGGTAGGCGAAACT CCAAAGCTGTTGGACCCTCTGGAGAGTCCCTCAATGCTAAGGAAGCTTTCAATTTAGCAGGTCTGAATTCTGGGTTCTTT GAGCTGAATCCCAAGGAAGGCGTTGCCCTTGTAAATGGCACAGCCGTTGGATCTGGCGTAGCTGCTGTGGTACTTTTTGA GACAAACATATTAGCTTTATTGTCAGTAGTTCTATCAGCAGTTTTTGCTGAAGTCATGCAGGGGAAGCCAGAATTTACGC ACCATCTTATACACAAGCTCAAGTACCATCCAGGTCAAATTGAGGCTGCTGCTATTATGGAACATATTTTAGATGGAAGC TCGTATATCAAATATGCTAAACTGCAGCAAGCAGATCCATCGCAGAAGCCTAGGAAAGATCGCTATGCTCTTCAAACTTC TCCTCAATGGCTTGGTCCACAGATTGAAGTCATCCGTTATTCGACCAAATCGATTGAAAGGGAGATAAATTCAGTGAATG ACAATCCTTTGATTGATGTCACTGGGAATAAGGTTTTGAATGGGGGTAATTTCCAAGGCACCCCAATTGGAGTTGCCATG GATAATGTACGTTTAGCTGTTGCTTCAATTGGCAAACTCATCTTTGCCCAATTTACCGAGCTAGTGAATGACTTGTATAA TAATGGTTTGCCATCAAATCTCTCAGCTGGTAGAAACCCAAGTCTGGATTATGGTTTTAAGGCATCTGAAGTTGCCATGG CTGCTTATTGTTCAGAACTCCAATATTTAGCAAATCCGGTAACGAGCCACGTGCAGAGTGCTGAACAGCACAACCAAGAT GTGAACTCTTTGGGCTTAATTTCTGCATGGAAAACCGTCGAAGCCGTTGAGATATTGAAGCTCATGTCTTCCACATACTT GGTTGCACTCTGCCAAGCTATTGACTTGAGGCATTTGGAAGAAATTTTTAAGAACACGGTCAGGAATACCATAAGCACGG TTGCAAAGAAGACATTATCCATAGAAGACAAAGAAGAAATCAACCCATTTCGATTTTGTGAGAAAGATTTACTCAAAGTG GTTGAGAGAGAATATGTATTCTCCTACATTGATGATCCATCCAACGTCATGTACCCACTGATGCCGAAACTAAAGCAGGT ACTTTATGAGCAAGCACACATTAGTGCCATTAATGACAAGAATGTGAGCTTGACAATCTTTGACAAGATTGGAGCTTTTG AGGATGAACTGAAGAATCTCTTCCCGAAGGAAGTTGAAAGTGCAAGGTTGGCTTATGAGAAGGGCAATCCAGCAATTCCA AACAGAATTAAGGAATGTAGGTCATACCCGCTGTACAAGTTTGTAAGGGAAGAATTAGGGACAGGGTTGCTGACCGGAGA TAAGACTATCTCACCAGATGAGGACTTTGAAAAAGTATTTACAGCCGTGAGACAAGCAAGGATTGTTGACCCACTTCTGG AATGTCTTGAAGATTGGAATGGAGTTCCCATCCCAATATAA
Protein sequence (LotjaGi1g1v0004200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNMATQKANQSVSDTDPLNWESAANSLKGSYFDEVKRMVADYRKPVICLGGGETLTISQVAAVANHNLQVKVGLSETARA GVEASCEWIMENVNKGTAIYGVTTGFGAASNRQTNQGLALQKEMVRFLNCAIFGFGAELSHTLPQSATRAAMLVRVNTLL QGYSGIRFEILEAITKLLNHNVTPVLPLRGTVTASGDLIPLSYIVALLIGRRNSKAVGPSGESLNAKEAFNLAGLNSGFF ELNPKEGVALVNGTAVGSGVAAVVLFETNILALLSVVLSAVFAEVMQGKPEFTHHLIHKLKYHPGQIEAAAIMEHILDGS SYIKYAKLQQADPSQKPRKDRYALQTSPQWLGPQIEVIRYSTKSIEREINSVNDNPLIDVTGNKVLNGGNFQGTPIGVAM DNVRLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSLDYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQD VNSLGLISAWKTVEAVEILKLMSSTYLVALCQAIDLRHLEEIFKNTVRNTISTVAKKTLSIEDKEEINPFRFCEKDLLKV VEREYVFSYIDDPSNVMYPLMPKLKQVLYEQAHISAINDKNVSLTIFDKIGAFEDELKNLFPKEVESARLAYEKGNPAIP NRIKECRSYPLYKFVREELGTGLLTGDKTISPDEDFEKVFTAVRQARIVDPLLECLEDWNGVPIPI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 706 | 698 | 0.0 | – | |
| PANTHER | 9 | 706 | 698 | 0.0 | ||
| Gene3D | 15 | 254 | 240 | 1.5E-87 | ||
| SUPERFAMILY | 16 | 706 | 691 | 1.02E-239 | ||
| TIGRFAM | 16 | 697 | 682 | 0.0 | ||
| CDD | 53 | 517 | 465 | 0.0 | ||
| Pfam | 55 | 520 | 466 | 1.9E-147 | ||
| ProSitePatterns | 190 | 206 | 17 | - | ||
| Gene3D | 255 | 696 | 442 | 2.1E-199 | – | |
| Gene3D | 520 | 634 | 115 | 2.1E-199 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | L-phenylalanine catabolic process | The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid. | ||
| Molecular function | Ammonia-lyase activity | Catalysis of the release of ammonia by the cleavage of a carbon-nitrogen bond or the reverse reaction with ammonia as a substrate. |
Expression pattern of LotjaGi1g1v0004200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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