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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0009400 |
| Transcript ID | LotjaGi1g1v0009400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070, chloroplastic; TrEMBL-Plants: tr|W9SJH5|W9SJH5_9ROSA Uncharacterized protein; Found in the gene: LotjaGi1g1v0009400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1204862..1210225) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAAGGTTACTGTTACATGGTTGTGGATATTGCAAATCGCAATGCAGAGACTGGTGCATTCTTCTTCTTCTTCCTTCC TTCCACAACCAGAACCACACCAGCTTCATGCTCAGTATCTCAAATCAGGCACTTTGAACAACCCAGATGCCTCTTCACGC CTTCTATCTCTCTATGCAAACCCCAACACAAACGACCTCAACCATGCTCGTTCCGTTTTCGACACCATGCATAAACCCAC TTTGGTTTCATGGAACCTGATCATCAGCTGCTACGTCCACAACCACCGTTCCAACGATGCCCTTCTCCTCTTTCGCCAAA TGCTCCATCACGACCTCCTCCCTGATGGTTTCACTCTCCCATGCGTCATCAAGGGGTGTTCTCGCTTGCATGCTGTTCAG GAAGGGAAACAGATTCATGGGTATGTCCTCAAAATCGGGTTTGGCTTTGATAAATTTGTGCAGAGCAGTTTGGTTAACAT GTATGCTAAGTGGGGTGAGATGGGTTTGGCTAGGAAGGTGTTTGATAAAATGGTTGATAGAGATGTGGTGTCATGGAACT CTTTGATTGATGGGTACGCGAGAAATGGGAATGTTGAGGTGGCAATGAAGCTGTTCGATGAAATGCCCAGCAGGGACGCG TTTACTTGGACTGCTTTGCTTGATGGGCTTGCCAAATGCGGCAAGGTTGAGGCTGCACGAGAGGTGTTTGATCAGATGCC TAAGAAGAGTTCGGTTTCTTGGAATGCCATGATCAATGGGTATATGAAGTCTGGTAAAATCAATCTCGCGCGTCAATTGT TTGGCCAGATGCCGGGGAGGAATCTGATAAGTTGGAACTCGATGATATCCGGGTACCAGCTCAACGGGCGGTTTCTTGAA GCTATGGAATTGTTTGAAGTGTTGCTGAAAGAGGGCCTCATGCCTAGCCATGTCACAATACTCAGTGCTCTTTCTGCTGT TTCAGGTTTGGCTGTTCTTGGTAATGGAAGATGGATCCATTCGTTTATGGTTAAGCATTGCTTTGAATTGGATGGTGTAC TTGGCACATCACTGATAGAAATGTATTCTAAGTGTGGCAGCATAGAGAGTGCTTTGGCTGTTTTCAAAGCAATAGCCAAC AAGAAACTGGGGCATTGGACAGCTATAATTGTGGGCTTAGGAATGCATGGTTTGGCTGACCAAGCTCTAGAACTTTTTAT GGAGATGCGCAGAATTGGAATGAAACCACATGCTATAACTTTCATTGGTGTGTTAAATGCTTGTAGTCATAAAGGCTTGG TAGATGAGGGAAACAAATGTTTTGATATGATGATAAATGAATATAAGATTGTGCCCACAGTTGAACATTATGGTTGCCTT GTTGACATTTTATGTCGAGCTGGGCATCTTCAGCAGGCAAAAAACATCATTGAGAGCATGCCAATGAGACCAAACAAAGT CATCTGGATGAGTTTGCTTAGCAGTTCTAGGAACCATGGAAACTTGGAAATTGGGGAATACGCAGCTCACAATTTAATTG AGGCGGATCCTGATGCTACAGGGTGTTATACTCTACTTTCTAACATTTATGCTGCAGCTGGAAAGTGGGATAAAGTTTCA CATGTAAGAGAAATGATGAAGGAGAGAGGAGTGTTAAAGGATGCTGGATGCAGCATTGTTGAGCACAGAGGTAAACTGAA CCGGTTTATTGTGGGTGACAAGTCGCATCCCCAAACCAAGGCTATATATGCTAAGTTGAGGGAGATGAGTAAGAAACTGA AACTGGCAGGACATGTTCCTGATACAAGCCAAGTTCTGCTAAATATTGAAGGTGAAAAAGAAAAAGAATCTGAACTAGAG AACCATAGTGAGAGGTTGGCCATCTCATTTGGTCTCCTAAACATGGAAAGACGGACGCCTATTCGCATTATGAAGAACCT TCGAGTTTGTAATGATTGCCACGCAGTTACAAAACTCCTCTCTGCTATCTATGGTCGTGAAATAATAGTGAGAGATAATA GCCGCTTCCATCATTTCAAAAAAGGAACTTGTTCTTGCAATGACTTTTGGTGATTGCCTTTCCATTAGCAAGTCATGGAT CCCTGTGGTGCTTTTGACACTCATATCTGAAGCTCCCAGCTTCCCTATCGAGGTATCAGTTTCTCAAAAAATGGTTGAAG GCTTATAGCTAATAATAGCTATGTGGTTGAAATTCCTTTAGGCCTCTTTATCACTTGATAAAGATGATTAGCTTCATGGA ATTGTACTATAATCAAATTATTTTATGCTCCTGGTGTCATTTCCAATGTGTAGAATTAGTTTACTATCACCTCAGATTTA ATAATTACAGTCATTCAGTTTGTGTAAGCATATTCTGTTATCTTGAAGTTTAAGCAAAAGGATATCAACTCATGATTAAA TGTTTAAGAATTTCTGCATGTTGTTGGGTTTTTGTTTGATTACCTTCATACAGTAGAGGCCTTGAACTTGGTTGCCATGT TTTTACTAATTATCATTTTGAGGAAAAACGGTTCAGGTTATGGGAAAAATAGAAAACCATGACTAAGTTTGTGCAAGACA ACCCAGTAAATATCACCCTTCAAAAAAAAAACCCAGTCAATATCATGAATCCATGCATAAGAGTTGATAATATTAGGGAC TCATTCATGTCTAACATGCAATCGTTCTCATACAGATTCTTCTTCGGCTCGTGTAGTTACATCAGTGAAAATGAAGTTAA ACACAACAGAACTGAAAATGGGAGCAGAAGATTGCAGCTGAAAAGGCATATCTTGGTACCCTCATTGTCCAGGGACGAAG TTAGTGGCAAAAGCCCAAGCATTGTTGGCAACAGGGTCAGCAACATGGTCGTAAAGGTTCTGAATAGGGCCCTTGCCAGT AACAATGGCCTGAACAAAGAAGCCAAACATGGAGAACATTGCCAATCGACCGTTCTTGAGTTCCTTCACCTTCAACTCTG CAAATGCATCAGGGTCATCAGCCAAACCAAGTGGGTCAAAGGCACCACCTGGGTAAAGTGGGTCTAGTCCTTCACCAAGG GGTCCTCCACCAACCCTGTAGCCTTCAATTAATCCCATGAGCACAACCTGAGTAGCCCAGATTGCAAGGATGCTCTGAGC ATGGATCAGGTTTGGGTTGCCTAAATAGTCAAGGCCACCCTCAGAGAAGATCTGGGCACCAGCCTTGAACCACACTGCCT CACCGAATTTGACACCATTCCTTTCAAGGATTTCTGGGAAGGTGCATCCCAAGGCACCAAGCATGGCCCATCTGCTGTGA ATCACCTCGAGCTCACGGTTCTTGGCGAAGGTTTCGGGGTCAGCTGATAATCCAGCTGTGTCCCATCCGTAGTCACCAGG GAATTCACCAGTCAGGTATGATGGAATTTGCTCAGAGAAAGGACCCAAGTACTTGGGACGGTCAGGGCCATACCTGTTTT TAACAAGAGGTCATGCCAAGTCAGTGAGTGTATTTTCGGAAATTCTTTTATAATTGATTCCAAAGCCAAAATCAATTATG AACAAAAGTTTCTCCTAAACTTGACGTCAGAATTGATTTTGAGAAAAATAAGCTCAACCAACATGTTATTACATTCTGAA ACAAGTTGTCAGGACCTCACTTCAAATGTTTGCACAGGATGTTATTTTTAAACTTTACAAGACAAACATAACTATATGTA ATTGCTATATCATGAGCTATTAGCCTTTAATATGATTTATTGCATATTTAGTTCATGTTTAGAAATTCTTTTACAATTAT TTCTAGAGCCAAAATCAATTTTGAGGAGAAGCTTCTGTGAGTGACTTCTAGTTTAGAATTGATTATGAAAAAAAGAGAAG TTGATCCAAAGATGTATTAGATTTGCTTCTTTTTCTCCTCTTTCTCTCAGAATAAATTCTCAGGTACATAAGTTACTCTT CATAATTGATTCTGGCTTCAAACGTGATTACAGATCGCATTCCAAAACATGCTATTATTAAAATGGAAGATCCCTGGCTT TTGGGCCAGCTCCATCTTGCTGAGAATTAGTATTATGTTCTCAAGAGACATGAGATAGAGGAGGTGAGGATCATTAGAAT TTAGAAACCATAACTACTGAGATTAAACAAAAAACGTTGGAAATATTTTGTAGTTGAAGTATTGTGCAGGGTAATTTTAC TTGAATTGAACTACTACTTCCTTACCAAATGCTCTGAGGAGCACTCTTCACAGTACGACGCATGGTAAAGCGACCTTTGC CAAAGCCACCAGCCTTGCGGAGGAGCTCATTTCCCTGCTTCAAAGCAGTCTGGCCAGTGAATGCTGATTGCTGGATAGCA GAGGTGGCCATGGTTATGTTATGCTTCTTGCACTTTGGTAGTGTTTCCTTTGGTGCTAGCTAGTGTGTTTTGCTTCTGCA GAATGATGAAGAAGCTCACAAGGTTTATAGAAGTGTAATGTGATATTGTGGATGAGGATATGCACAAGTCAGCAACATCT CATTGGTGGTGGATTTGGATGTGGATTCTCAACCTGATATTTTGCATTGAGAAATTGGCTCTCATTCTGCCATCTGGATG CACAGGTCCACTTGCTCAGATGTTTTGTGGAGGGTGAATGTAAGCCACAGAAATCAGGTCCAGCAAAGTTAAGAAAGAAA GAGTTAAACTTGGCAGAGGGTTTGTATTGGGCTGATGGTACAGACTACAGAGCAACCCCATTGCCCATCACATATTTTTC CATGCTAATATTATTTGACACCTCAGTATTTACACAATTACACTTATCCCTATATTATTTTCTTCATAAGTTTTTTTTGA TAACTCAGGTAATCCAGCCCACTGGACTGACTAATCCTGGGGGACCAATCCCACCGACCACTTGCGGGGGGCCCAATTGA AGCCAGAGCTTCGCTCTGTATGGCCTGGCCAACAATGTTTGATTCACCAGTAGGTTTCGAACCTGAGACCTGGAGAGGAG CACACTCCCAAGTCCCAAGTCTTTCACCACCAGGGCAACCATTGCTGGTTATTTTCTTCATAAGTGAATTATTCATTAAG ATAATTGGATTGAGGATGACACTCACATTTTTACTTGAATTTTGTAACCAACACTATTGATCCATCAACAATAGGGTTAT TCATCTTTATGGGTAACTTAGTAATCTTTTATAAAAAAAAATGTAGGAGAAATAGAAGCTATTACCAGAAAAATATGGTG GGGATAGTGTAAGAAAAATGAAATGTGGAAAGAGCTCTAAGTTTTTGAGTGACTTGCTGTTAACTACATGTTAGAGAAAA AAAAAAAACACTTATTTTTCACAAAGTAACTGAAACCACATAAACTCAGGGTCCATATGACAAACAGCCACAAGCAAAGA CTGG
CDS sequence (LotjaGi1g1v0009400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAGACTGGTGCATTCTTCTTCTTCTTCCTTCCTTCCACAACCAGAACCACACCAGCTTCATGCTCAGTATCTCAA ATCAGGCACTTTGAACAACCCAGATGCCTCTTCACGCCTTCTATCTCTCTATGCAAACCCCAACACAAACGACCTCAACC ATGCTCGTTCCGTTTTCGACACCATGCATAAACCCACTTTGGTTTCATGGAACCTGATCATCAGCTGCTACGTCCACAAC CACCGTTCCAACGATGCCCTTCTCCTCTTTCGCCAAATGCTCCATCACGACCTCCTCCCTGATGGTTTCACTCTCCCATG CGTCATCAAGGGGTGTTCTCGCTTGCATGCTGTTCAGGAAGGGAAACAGATTCATGGGTATGTCCTCAAAATCGGGTTTG GCTTTGATAAATTTGTGCAGAGCAGTTTGGTTAACATGTATGCTAAGTGGGGTGAGATGGGTTTGGCTAGGAAGGTGTTT GATAAAATGGTTGATAGAGATGTGGTGTCATGGAACTCTTTGATTGATGGGTACGCGAGAAATGGGAATGTTGAGGTGGC AATGAAGCTGTTCGATGAAATGCCCAGCAGGGACGCGTTTACTTGGACTGCTTTGCTTGATGGGCTTGCCAAATGCGGCA AGGTTGAGGCTGCACGAGAGGTGTTTGATCAGATGCCTAAGAAGAGTTCGGTTTCTTGGAATGCCATGATCAATGGGTAT ATGAAGTCTGGTAAAATCAATCTCGCGCGTCAATTGTTTGGCCAGATGCCGGGGAGGAATCTGATAAGTTGGAACTCGAT GATATCCGGGTACCAGCTCAACGGGCGGTTTCTTGAAGCTATGGAATTGTTTGAAGTGTTGCTGAAAGAGGGCCTCATGC CTAGCCATGTCACAATACTCAGTGCTCTTTCTGCTGTTTCAGGTTTGGCTGTTCTTGGTAATGGAAGATGGATCCATTCG TTTATGGTTAAGCATTGCTTTGAATTGGATGGTGTACTTGGCACATCACTGATAGAAATGTATTCTAAGTGTGGCAGCAT AGAGAGTGCTTTGGCTGTTTTCAAAGCAATAGCCAACAAGAAACTGGGGCATTGGACAGCTATAATTGTGGGCTTAGGAA TGCATGGTTTGGCTGACCAAGCTCTAGAACTTTTTATGGAGATGCGCAGAATTGGAATGAAACCACATGCTATAACTTTC ATTGGTGTGTTAAATGCTTGTAGTCATAAAGGCTTGGTAGATGAGGGAAACAAATGTTTTGATATGATGATAAATGAATA TAAGATTGTGCCCACAGTTGAACATTATGGTTGCCTTGTTGACATTTTATGTCGAGCTGGGCATCTTCAGCAGGCAAAAA ACATCATTGAGAGCATGCCAATGAGACCAAACAAAGTCATCTGGATGAGTTTGCTTAGCAGTTCTAGGAACCATGGAAAC TTGGAAATTGGGGAATACGCAGCTCACAATTTAATTGAGGCGGATCCTGATGCTACAGGGTGTTATACTCTACTTTCTAA CATTTATGCTGCAGCTGGAAAGTGGGATAAAGTTTCACATGTAAGAGAAATGATGAAGGAGAGAGGAGTGTTAAAGGATG CTGGATGCAGCATTGTTGAGCACAGAGGTAAACTGAACCGGTTTATTGTGGGTGACAAGTCGCATCCCCAAACCAAGGCT ATATATGCTAAGTTGAGGGAGATGAGTAAGAAACTGAAACTGGCAGGACATGTTCCTGATACAAGCCAAGTTCTGCTAAA TATTGAAGGTGAAAAAGAAAAAGAATCTGAACTAGAGAACCATAGTGAGAGGTTGGCCATCTCATTTGGTCTCCTAAACA TGGAAAGACGGACGCCTATTCGCATTATGAAGAACCTTCGAGTTTGTAATGATTGCCACGCAGTTACAAAACTCCTCTCT GCTATCTATGGTCGTGAAATAATAGTGAGAGATAATAGCCGCTTCCATCATTTCAAAAAAGGAACTTGTTCTTGCAATGA CTTTTGGTGA
Protein sequence (LotjaGi1g1v0009400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQRLVHSSSSSFLPQPEPHQLHAQYLKSGTLNNPDASSRLLSLYANPNTNDLNHARSVFDTMHKPTLVSWNLIISCYVHN HRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVF DKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGY MKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHS FMVKHCFELDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITF IGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGN LEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKA IYAKLREMSKKLKLAGHVPDTSQVLLNIEGEKEKESELENHSERLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLS AIYGREIIVRDNSRFHHFKKGTCSCNDFW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 17 | 128 | 112 | 1.7E-15 | ||
| PANTHER | 20 | 124 | 105 | 7.3E-122 | – | |
| Pfam | 65 | 113 | 49 | 1.4E-8 | ||
| ProSiteProfiles | 66 | 100 | 35 | 10.172 | ||
| TIGRFAM | 68 | 101 | 34 | 2.4E-6 | ||
| ProSiteProfiles | 101 | 135 | 35 | 6.138 | ||
| PANTHER | 119 | 227 | 109 | 7.3E-122 | – | |
| Gene3D | 135 | 228 | 94 | 3.5E-29 | ||
| ProSiteProfiles | 136 | 166 | 31 | 8.046 | ||
| TIGRFAM | 141 | 169 | 29 | 1.1E-4 | ||
| SUPERFAMILY | 145 | 257 | 113 | 9.86E-5 | ||
| Pfam | 166 | 195 | 30 | 4.3E-11 | ||
| ProSiteProfiles | 167 | 201 | 35 | 12.299 | ||
| TIGRFAM | 169 | 197 | 29 | 7.6E-9 | ||
| Pfam | 200 | 228 | 29 | 5.5E-7 | ||
| TIGRFAM | 200 | 228 | 29 | 4.2E-7 | ||
| ProSiteProfiles | 202 | 228 | 27 | 7.728 | ||
| PANTHER | 203 | 256 | 54 | 7.3E-122 | – | |
| Pfam | 229 | 260 | 32 | 3.0E-7 | ||
| Gene3D | 229 | 304 | 76 | 2.4E-18 | ||
| ProSiteProfiles | 229 | 259 | 31 | 10.194 | ||
| TIGRFAM | 231 | 259 | 29 | 2.2E-6 | ||
| PANTHER | 234 | 318 | 85 | 7.3E-122 | – | |
| ProSiteProfiles | 260 | 294 | 35 | 12.014 | ||
| TIGRFAM | 262 | 295 | 34 | 1.8E-5 | ||
| Pfam | 262 | 292 | 31 | 1.8E-6 | ||
| Gene3D | 305 | 570 | 266 | 1.4E-36 | ||
| PANTHER | 314 | 526 | 213 | 7.3E-122 | – | |
| ProSiteProfiles | 330 | 360 | 31 | 6.993 | ||
| Pfam | 335 | 356 | 22 | 0.13 | ||
| ProSiteProfiles | 361 | 395 | 35 | 10.084 | ||
| Pfam | 364 | 392 | 29 | 6.3E-5 | ||
| ProSiteProfiles | 396 | 426 | 31 | 6.873 | ||
| Pfam | 399 | 425 | 27 | 0.089 | ||
| ProSiteProfiles | 432 | 466 | 35 | 7.739 | ||
| Pfam | 435 | 460 | 26 | 0.29 | ||
| ProSiteProfiles | 498 | 532 | 35 | 8.046 | ||
| Pfam | 501 | 530 | 30 | 0.031 | ||
| Pfam | 535 | 659 | 125 | 3.7E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0009400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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