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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0010700 |
| Transcript ID | LotjaGi1g1v0010700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat receptor-like protein kinase family; TAIR: AT3G12610.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|Q00874|DR100_ARATH DNA damage-repair/toleration protein DRT100; TrEMBL-Plants: tr|Q708X5|Q708X5_CICAR Leucine rich repeat protein; Found in the gene: LotjaGi1g1v0010700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1312179..1314291) extracted from Lotus japonicus Gifu genome v1.2.
TTTCTACTTACTTTCTTTCCTCTACCTTCCCTACTACAAGCAAACTTTGTAAAATTTAATACTGACAGGACATGAATACA AGGCATTAATTTCAACTTTCAAGCACCAACAATGACATGTGGATTACATTCAAACTCTGATGTTGCAATAACAGCACCAT GCAAGGGGCAATATAGTCCATTCAATGCATTTATATACCCATGCAAACTTTCACACAAACACACTGAATAATGGCTCCGT TTCTAATCATCGTAACCGCCATTCTCGCCGCCGCAACCGTCGCCGTCAATGGCTGCTCTCCGGCAGACCGTGCGGCGCTT CTAGCCTTCCGGAAAGAACTCACCGAACCTTACCTCGGCGTCTTCGACTCATGGTCCGGCGATAACTGCTGCGTCAACTG GTACGGCGTCAGCTGCGACTCCACCACCGGTCGCGTCACCGACGTCAACCTCCGCGGCGAGTCAGAGGACGTGATATTCG AGAGCACCGGCCGCTCCGGCTACATGTCAGGCAAAATCTCGCCGGCGATTTGCAAGATCGAGCACCTCACCACACTCATC GTCGCCGACTGGAAAGCCATCTCCGGCGAGATTCCTCCCTGTATCACCTCACTCTCCTCCCTCCGCATCATGGACCTCAT CGGAAACCAAATCTCCGGCCAGATCCCAACCGACATAGGGAAGTTACAGCGGCTCACAGTGCTGAACCTCGCTGACAACG CCATCTCCGGCGAGATTCCACCTTCAATCGTCAACCTCGCTTCTCTCAAGCACCTCGATCTCAGCAATAACCGTCTCTCC GGCGAGGTCCCCGCCGATTTCGGGAAACTCACCATGCTCAGCCGCGCGTTGCTGAACCGGAACCAGCTCAGCGGTTCAAT TCCGGTTTCCATCGCGAAAATCTACCGGCTCGCGGACTTGGATTTGTCTGCGAACCGGTTCACCGGTTCGGTTCCGGCTG AGTTTGGAAGAATGCGGGTTCTTTCGACCCTGAATTTGGATAGTAACTCGCTTTCGGGTCAAATACCTTCAACTTTGTTA AGCAATTCGGGTATGGGTATCTTGAATTTGAGTCGAAACGGGTTGGAGGGTACCATACCCGATGTTTTTGGTCCGAATTC GTATTTCATGGCTTTGGATTTGTCGTATAACGGGTTACAGGGTCGGGTACCCGGTTCGTTGTGTTCCGCGAAGTATATCG GGCATTTGGATCTTAGCCATAACCACTTATGTGGATCAATTCCAATGGGAGAACCCTTTGATCACCTTGAAGCGTCGTCG TTTAGTAGCAATGATTGTTTGTGCGGGAACCCGTTGAAGACTTGCTAGTAGTGTGTGTGACCCGAAACCCGAATTAAGAA CCCGATTTGTTGTATGATGATTTATCACGTAGCTAAAGTGTGATTTTTCAATTTAATAGTAGTGTTTTGTTATGTTGTTT AATTATTAATGTAATATTGAAGTGCTAAAGTTGAATTAATGGACGTGCATATATAGTAGTAGTATCAATAATGTGGCTTT CAAAGGAAAGAATTTATGTTTAATTGGGAAGAGGGTCAAGCTTGTTTTGATTTTTCTCTTTGTTGCATACTTGCATGTGA TGATGAAGGAGCAATTGTATGTTCGTGGGCTGATGCTTGTGTTGTGACTGGTGTGTTTTATTAAGGACTTAATTTGGTGA AGATTGGCTTGTTGGTGCGTGTCTGGTTGCAGTTCTACATTATTGTTGAGGGGCTTTGAAGGAGAGTTGCATCACCTTGT GTATTAGTGTGTAGGATTGGACTAGGTGGGTGCTGTTGGGTTATAACTTATAATAAGAATTGTAATTTTGATGCTGTTTT AGTTTTGTTTTAGCTTGTTTCCTTCGAGTAGTGACTTGCTCTCTTATACCGTCATTACCTCTTTATGTATTTGGATTCTA GCACCCTTTATGCTAGTTTTGAATGTGATTTGGCTTATAAAAAGACTAGGAATCTGAGCTTCCTAGTTAGATAATGTAAA ATGTTTTGGATAAAGAATTAATACTCACATTATTGTTTTTCCATATTATGATTTGAATGTTTGATCTATCAATACACAGT CATAACTTTGAGTGTGTTATATGCTCTTGGGTT
CDS sequence (LotjaGi1g1v0010700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCGTTTCTAATCATCGTAACCGCCATTCTCGCCGCCGCAACCGTCGCCGTCAATGGCTGCTCTCCGGCAGACCG TGCGGCGCTTCTAGCCTTCCGGAAAGAACTCACCGAACCTTACCTCGGCGTCTTCGACTCATGGTCCGGCGATAACTGCT GCGTCAACTGGTACGGCGTCAGCTGCGACTCCACCACCGGTCGCGTCACCGACGTCAACCTCCGCGGCGAGTCAGAGGAC GTGATATTCGAGAGCACCGGCCGCTCCGGCTACATGTCAGGCAAAATCTCGCCGGCGATTTGCAAGATCGAGCACCTCAC CACACTCATCGTCGCCGACTGGAAAGCCATCTCCGGCGAGATTCCTCCCTGTATCACCTCACTCTCCTCCCTCCGCATCA TGGACCTCATCGGAAACCAAATCTCCGGCCAGATCCCAACCGACATAGGGAAGTTACAGCGGCTCACAGTGCTGAACCTC GCTGACAACGCCATCTCCGGCGAGATTCCACCTTCAATCGTCAACCTCGCTTCTCTCAAGCACCTCGATCTCAGCAATAA CCGTCTCTCCGGCGAGGTCCCCGCCGATTTCGGGAAACTCACCATGCTCAGCCGCGCGTTGCTGAACCGGAACCAGCTCA GCGGTTCAATTCCGGTTTCCATCGCGAAAATCTACCGGCTCGCGGACTTGGATTTGTCTGCGAACCGGTTCACCGGTTCG GTTCCGGCTGAGTTTGGAAGAATGCGGGTTCTTTCGACCCTGAATTTGGATAGTAACTCGCTTTCGGGTCAAATACCTTC AACTTTGTTAAGCAATTCGGGTATGGGTATCTTGAATTTGAGTCGAAACGGGTTGGAGGGTACCATACCCGATGTTTTTG GTCCGAATTCGTATTTCATGGCTTTGGATTTGTCGTATAACGGGTTACAGGGTCGGGTACCCGGTTCGTTGTGTTCCGCG AAGTATATCGGGCATTTGGATCTTAGCCATAACCACTTATGTGGATCAATTCCAATGGGAGAACCCTTTGATCACCTTGA AGCGTCGTCGTTTAGTAGCAATGATTGTTTGTGCGGGAACCCGTTGAAGACTTGCTAG
Protein sequence (LotjaGi1g1v0010700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPFLIIVTAILAAATVAVNGCSPADRAALLAFRKELTEPYLGVFDSWSGDNCCVNWYGVSCDSTTGRVTDVNLRGESED VIFESTGRSGYMSGKISPAICKIEHLTTLIVADWKAISGEIPPCITSLSSLRIMDLIGNQISGQIPTDIGKLQRLTVLNL ADNAISGEIPPSIVNLASLKHLDLSNNRLSGEVPADFGKLTMLSRALLNRNQLSGSIPVSIAKIYRLADLDLSANRFTGS VPAEFGRMRVLSTLNLDSNSLSGQIPSTLLSNSGMGILNLSRNGLEGTIPDVFGPNSYFMALDLSYNGLQGRVPGSLCSA KYIGHLDLSHNHLCGSIPMGEPFDHLEASSFSSNDCLCGNPLKTC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_EUK | 1 | 18 | 18 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| PANTHER | 5 | 365 | 361 | 2.9E-173 | – | |
| PANTHER | 5 | 365 | 361 | 2.9E-173 | – | |
| Phobius | 16 | 24 | 9 | - | – | |
| Gene3D | 18 | 87 | 70 | 1.6E-9 | ||
| SUPERFAMILY | 21 | 363 | 343 | 4.76E-68 | – | |
| Pfam | 24 | 63 | 40 | 1.6E-10 | ||
| Phobius | 25 | 365 | 341 | - | – | |
| Gene3D | 88 | 365 | 278 | 1.7E-84 | ||
| SMART | 128 | 152 | 25 | 56.0 | ||
| Pfam | 153 | 189 | 37 | 3.0E-7 | ||
| SMART | 176 | 200 | 25 | 9.2 | ||
| SMART | 248 | 272 | 25 | 76.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0010700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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