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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0011200 |
| Transcript ID | LotjaGi1g1v0011200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear transcription factor Y subunit; TAIR: AT5G12840.2 nuclear factor Y, subunit A1; Swiss-Prot: sp|Q9LXV5|NFYA1_ARATH Nuclear transcription factor Y subunit A-1; TrEMBL-Plants: tr|K7MQE5|K7MQE5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0011200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1387173..1390400) extracted from Lotus japonicus Gifu genome v1.2.
CTCAGTGACCCCACACGGCGGTGACGTCATCATAAGATGTCACTTGTGAAATTTACACACTCCACCACCACACTACAGTT GGTAGTACTAGTGTTCTGTTGTTACTTAAAACAAACGGTGATCACTCTTCAACTTTTCTCCATGTTCAGTTGACAGCTGA AGTGGCATGTCAGAACCCCACAATCTAGGGTAAGCAAAGTTATTCTCTTTTTTATTTGCTTTTTTTTTTTCCTTAATCAG CTGAAGAACTTGATTTGATTTTTTGCTTCATTCCCCTTTTGGGACTTTTGAGGATTAGGGTATTAGGGATTTTATTTTAA TTTTTTGACTTTTTCTTCTCTGGGTGTGATGATTCTGTGCCTGCATGTGGAAATTCTTGCATGGTATCACCAAAACCTAG TCTTTTTGGTGGTGTGTGATGTGGGAAATTCTTTGAGCTGGGTTTGGTTGCAATTTGCAAATGTGTGAGATGGGGGAGAA TTGGGATTTTGGTGTTTGTTTGAGGATTAGTGAAAGTCCTAATTTTGGTGATAGTTGATCAAATTGAGCTTACCAGCAAG TGTTTGTCTAGTTCTCTGACTATTGTTAAGGTTGCATGTTGGAACTTGGAATGTCCCCTGGTTCTGTTTGCTTGTATGAG TAAAAATTGAAATGGCAGAAACAAATGTAGCTGAGTGCTTGGATTTTGTACTAGACGATATTTTGTTCTTGTGAACTCAT ACCTTGACTTAAGTGACTCTTTCATTAATTAATTTATGAAGTTATGATATAAATTTATTGAAACTTCCTTCAAATTGTGC TTGATATCATCTTGAGAATTTTTTAGATGTAAAGGTCCACATCAATGTTTCTGAGACATTTATGGAAACAGCTTTCATTT AATCACATGATTCTGTTTCGGAATCAGAAATACCATATTAATGCATTGGATGGTCTCTCATTGGAAAAGGAATTTATTTG CTCACTCACTTTACCAGCTTTTGTTTCTCTTGCCTTTTGTTTTGGAGTAAGGAGTCAAATTTTTATATCCTAATCCAATA TAATCTTGTAGGGATCTGAAGATAAGATATTCAATCCAAATCTGAAGCTGCACATCAACTGAGGCTTAATCCACATTCCT TTGTACCTAGCAGTGTTTATTCTGAGCCCTGGTGTTGTGGTACTGGGTAAAATCCTGTCTCCCAAACAATGTCAGGGGCA AATGCATCCAATTCATCCTCACTTGACTGCGCTAACAGTGATTCTTCAGAAACCGGTGAAGACCAATCTTTGTACAATAA TGGGGTGAATGAAGAAGATGATGCTACTAAAGAATCACAACCTACTGGTACTGCTCCTAATCAATCAGGTTCTTTAAACT ATTTTGTAAAGAAAAATATAAATTTTAAAAGGAAAGACTAAGTTTACTTACATTGGTGCCTCAAATATGTTTATGTAGTT TTTTCGTTAGCAGTGTTCCAAGCTTATGGGGATACTGATACAATGCAAATTTTTTTGGCAGGAAGTAATGGGCCAGGAGA TCAGGGGATACAGCATGCTTCATCTGCATCTACACAGACTCCACAGGTGGAACTTGTTGGTCATTCAATTGTTGGGCTCC CCCCTCCCTTTTTTTCTTTATCATCTTTTTGGCACGGCATAGATCCTGATTTTCTGACTGTTTCTTGCATTTTTTTTGCT GATTCTTGTATATCTAATTGTAATGATGAAAATTCAATTATTAGACTTCCATCATGCATGCTTTTGGGCTTAGGGTATAG TATTCATTTTAATGGACCAAGGTTGGTCTTCACTGGATTCCTTATGTAAGCATTAACTCTTTTACTGCAGGCTTGTGCTT CAAATCCTTATCAGGATCCGTATTACGGGGGCATGATGGCAGCATACGCACACCAGCAGTTGGTATGTGAGACTAACCAG TATTCATACATTAATGATTAGTACATGTAGTTTTTCACTCATGATCTGCATTGTGCATAACCCTGAAGGATATATTCTTC TTGTTATATGGTAAATTTATTTCATGCTACTTGGTCAACTGTCCTGTTTCAGACATAGTGGTATTAGGATATCATTGTGA TGAATAACATACGATATTTTCACTGTTAGGGATATGGTCCTTTTATAGCAATGCCTCATCCTAGAATGGCCTTGCCCCTT GAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAATACCTAGGAATTCTAAGACGAAGACAGGCTCGTGCTAAGGC AGAGCTTGAAAAGAAGTTGATTAAAGTTAGAAAGGTACGATGCGCACAAGCTTTGGATGGACTAATGCTTTGAATGCATG TTTGTCAATATAAATGTTTTATGCTTGTTTGGATCTAATATAGTACTAATAATACTTACTATTTTTTCACATGCAAATCT GGAATTCTTTTCTGGGCTTCTGTTAACATCCATTCCTGCACAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGA GAAGAGCAAGGGGTAGCGGAGGACGATTTGCAAAGAAAACCGAAGCTGATACAAGCGGTGGTCCAATCCCACCATCACAG TCAATTAGTTCATCTGGTTCTGAACCTTTACCTTCTGACTCTGCTGAGACTTGGAATTCTCCAAGTGTGCAACAAGCAAC CACAGGAGGATCTAAAGTGCATGAGAGATTTCAAGAACACAGCTATGCAAGTGGTGGTAGTGGCTCCTACCATAATCATA ATGGTTCGCAACGACCTTCAAGTTTCTGTTCTGAGCACACTTCACAGAGGCGTCTTGCTATTCAGTGATGTGTACCTTGG TTATCTCTATACATACTTTGGCAATTTTCATGCCCAGCGGCAAATCATTCTTGGCTCTGTGTTTGTGATGTTGGGAGAAG AATGATTGGTTGTTGTGCCTTGCCTTGGGACTCATGTTGAAGTCAAGCCAGCCTTCATTCTTTTCTCATTTTGTACAAAG ATAGTAGTTAGCTTAGTTAAGCTGAGATGAACGTTTGATCAGAAGACTTGGTGAAACAAACTCTTATCTACTAACTATAT TTTATGTAGGTTCCCGTTTATTGTTGTTAAATATGACAGACATTTTAGGATAGATTCTCTGCATGATTAGTATTGCTTCA TCTTTGGACCTTGCTGTTTCAATTTTATTTTTAGTTGAATTTCGGGTTTACTCAGGTCATTTGGTTAGTAAGGCGAGCAC AACTTTTAAACCTATAATAATCAATGGG
CDS sequence (LotjaGi1g1v0011200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGGGGCAAATGCATCCAATTCATCCTCACTTGACTGCGCTAACAGTGATTCTTCAGAAACCGGTGAAGACCAATC TTTGTACAATAATGGGGTGAATGAAGAAGATGATGCTACTAAAGAATCACAACCTACTGGAAGTAATGGGCCAGGAGATC AGGGGATACAGCATGCTTCATCTGCATCTACACAGACTCCACAGGCTTGTGCTTCAAATCCTTATCAGGATCCGTATTAC GGGGGCATGATGGCAGCATACGCACACCAGCAGTTGGGATATGGTCCTTTTATAGCAATGCCTCATCCTAGAATGGCCTT GCCCCTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAATACCTAGGAATTCTAAGACGAAGACAGGCTCGTG CTAAGGCAGAGCTTGAAAAGAAGTTGATTAAAGTTAGAAAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGAGA AGAGCAAGGGGTAGCGGAGGACGATTTGCAAAGAAAACCGAAGCTGATACAAGCGGTGGTCCAATCCCACCATCACAGTC AATTAGTTCATCTGGTTCTGAACCTTTACCTTCTGACTCTGCTGAGACTTGGAATTCTCCAAGTGTGCAACAAGCAACCA CAGGAGGATCTAAAGTGCATGAGAGATTTCAAGAACACAGCTATGCAAGTGGTGGTAGTGGCTCCTACCATAATCATAAT GGTTCGCAACGACCTTCAAGTTTCTGTTCTGAGCACACTTCACAGAGGCGTCTTGCTATTCAGTGA
Protein sequence (LotjaGi1g1v0011200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGANASNSSSLDCANSDSSETGEDQSLYNNGVNEEDDATKESQPTGSNGPGDQGIQHASSASTQTPQACASNPYQDPYY GGMMAAYAHQQLGYGPFIAMPHPRMALPLEMAQEPVYVNAKQYLGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMR RARGSGGRFAKKTEADTSGGPIPPSQSISSSGSEPLPSDSAETWNSPSVQQATTGGSKVHERFQEHSYASGGSGSYHNHN GSQRPSSFCSEHTSQRRLAIQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 34 | 34 | - | – | |
| MobiDBLite | 1 | 70 | 70 | - | – | |
| PANTHER | 2 | 223 | 222 | 3.4E-76 | ||
| PANTHER | 2 | 223 | 222 | 3.4E-76 | – | |
| MobiDBLite | 43 | 70 | 28 | - | – | |
| SMART | 111 | 172 | 62 | 3.6E-35 | ||
| ProSiteProfiles | 112 | 172 | 61 | 36.599 | ||
| Pfam | 114 | 169 | 56 | 1.7E-26 | ||
| PRINTS | 115 | 137 | 23 | 1.0E-23 | ||
| ProSitePatterns | 117 | 137 | 21 | - | ||
| PRINTS | 146 | 169 | 24 | 1.0E-23 | ||
| MobiDBLite | 148 | 261 | 114 | - | – | |
| MobiDBLite | 148 | 166 | 19 | - | – | |
| MobiDBLite | 179 | 218 | 40 | - | – | |
| MobiDBLite | 228 | 261 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | CCAAT-binding factor complex | A heteromeric transcription factor complex that binds to the CCAAT-box upstream of promoters; functions as both an activator and a repressor, depending on its interacting cofactors. Typically trimeric consisting of NFYA, NFYB and NFYC subunits. In Saccharomyces, it activates the transcription of genes in response to growth in a nonfermentable carbon source and consists of four known subunits: HAP2, HAP3, HAP4 and HAP5. |
Expression pattern of LotjaGi1g1v0011200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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