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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0011600 |
| Transcript ID | LotjaGi1g1v0011600.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heme A synthase; TAIR: AT5G56090.1 cytochrome c oxidase 15; Swiss-Prot: sp|Q9FKT8|COX15_ARATH Cytochrome c oxidase assembly protein COX15; TrEMBL-Plants: tr|A0A151U2K9|A0A151U2K9_CAJCA Cytochrome c oxidase assembly protein COX15 isogeny; Found in the gene: LotjaGi1g1v0011600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1414082..1417330) extracted from Lotus japonicus Gifu genome v1.2.
TATCACACTTTGTATTGGATGATCGCATCCTTCATGTTTTTTCAATCCAGATTCACAATCAGAAATAGAGTGTGAAATGT GTCAATGGTATTCTGGTGGATAAAAAAAGCTACAATTGTTGATTTTTATGCTTTGTGTGTGTGAATGTGTTTTTGTATCT GAGGAAAGTGTTATGGTGTTTTGATTAGGGACATCATGTGTCATTCACGAGGAGCTTTTCTAAGGTGGTTTCTGCTGGGG CTGAACATAAGGAGGGGTTGAAGCTGCTTGTTGCAGGAGGTGCTCATGCTCAGAAAGTGGTGGGAGTATGGCTATTTGGC TCTGCCGCATGGGTGTTTAGCATGGTGCTTCTTGGGGGTTTAACCAGACTCACTAGATCTGGTCTTTCAATGACTGATTG GAAATTCACAGGTGGTCTTCCTCCTTTGTCAGATGAGGAATGGTTGAAAGAGTTTGAGAAATATAAGCAGTCACCTGAAT ACAAACGGTAAGATGCAAACAATTGCTGTAGCTCAGCATCATATACTTGAAATAAACGTTTTTGGCACACCTATAATTTT TCATGAATTTTATAGGAAATATTCTGTTTCTTATTGTTCTGCCTAATTGAAAGTGTAACATATGGAATGCACAGAGGGAT TTACTTATGCGAATTGAATGGTAAAACACTTCCCAACACTTGCACAGAAACCTTCCTGAAGATGGCTGAAATGAATGAAT CCAACCTTATAAATTAGATGATTAATTTCTAAGGGATAATAACAATAGTACTCAAGTTTGTCATAAAAAATATCTACGTT TTGCTTAAGAAAAATTGTTTCGGTTATGTCTTTCAAGGAATATAGATGATAATAAGTATGATAACAATGGAGATAATTTA CTAAATGAATCAATTTTTTAAAATTGGCATTAGGGGGGCTGTACCAATGGACATTTTTATTCAAGTGCTAATTACATCAA TTTTTTAAAATTGGCCTCAGGGGGGCTGTGCCAATGGACATTTTTATTCAAGTGCTAATTACAATTTACAAGTTTAAGCG TTGATTATAGATCGATTGTAAAAATAAAAGGATTGATCAAGTGGAAGTGAGTTGAAGCTCCGCCTGAAAGAGCTGTAGTA GTTCTTATGAATGGTATGATGATAACTTATTGCAACTTGTTGCAGTGTTAACAAAGGGATGACGATTGAAGAATTCAAGT TCATATATTGGATGGAATATGCACATCGTATGTGGGGAAGGGCGCTAGGAGTTATTTTTGCTTTACCATATTCATATTTT CTCCATAAAGGGTATATTACCTTGAGATTAGGACTGAGACTTTCTGCTCTGTTTGCCCTGGGTGCTGGGCAGGGTCTCAT TGGCTGGTGGATGGTCAAAAGTGGATTAGAGGTTGGAACATAAAATAAAATAAACGTCTTGTTTATTTCAAGTCAAATTG ACTAGAACAGCCAGATTCTAATGACATTTTCCTTCCTTAGGAACCCCCAACTGAATATTCTCAACCAAGGGTAAGCCCTT ATCGTCTTGCAGCTCACCTTACATCAGCATTTGCTATTTACTGTGGCCTCTTTTGGACTGCACTTTCGGTTGTTATGCCA GAACCACCAGCTGAATCAGTTACGTGGGTTCGTGGAGCAGCTAAAGTAAGGAGACTTGCATTGCCTGTCAGCCTACTTGT TGGTCTCACTGCTGTCTCTGGTGCGTTTGTTGCTGGAAATGATGCTGTAAGCTTGCACAACAGTTTCATGCCTATCATAT TTGTGCTTGAAATTTTGATTGCGCCTTTGATGATGTTGAAAGATAATCATTTTGCTTCCATGTTGATTGCCAGGGGCATG CATTTAATACTTTTCCGAAGATGGGTGATACATGGATACCAGAAGACATTTTTGAAATGAAACCTCTGATTCGAAATTTC TTTGAGAATACATCGACTGTACAGGTAATTCCATGCTGATTTATTACTGATAAGTTTTTAAAATTGTTGTACCTTTGTTC TTTTGACTTATACTCTAGATTGGTTTCTTATGCACTATTCAAGAGTTTTAAATTTTGCAACGAATGAAGTATTCAGAAAT ACTTTTTGAAGCATCTAATTTTGGAGAGGTTAGCAATTGATTTATCCTCATGACTGTGATTTGCCAGTCAAAATTTAAAT TTCAAATGTCAGCAGAACTTTTCCATTTCTTTCTTCCTTTGAACTTCGAAGCCATGAGTTTATGTTGTTGGACACTTAGA CTTGTCTGCTACAAGGCAATAAAGGCACTTCAGCCCAGTTCCTTTAGTGGTTTGTGCTTCGAAATTTAACAACATGAAGT TTAAATAAGTGTTTTGTTTTAACAGCTCGATCACCGTATCCTTGCAACTGCAACTCTAATTTCCGTGGGTGCTTTGTGGG GGGCAACAAGAAAGCTGGACATACACCCTGCAGTACGATCTGTGATTGGAAGCATAGTTGGCATGGCAGCTCTTCAGGTC ATTATTTCAGTTTCCAGATTTATATGTCTATAACATTTTTCATTTTATGCTGTTGGGTTCCATTTTGTCACTGGTTAGCT TTTTACCTCATGATATATTGCCTCCCTCCCTTGTCTGAGATGAATACTCATACTTGTTCCATTAGCATTTTACTGATTCA TGAACTAGTCGAAGATGATGATGATGGTAATAGCTAGATAAAATAAAAAAATTCAAGGAAAACTGTTTGATGCTTGATTT TTTGTCATCAGTCTACTGTATAATATAAAGTCATTTGTGTGTCCACCAAATAGCTTAAACTATTGAGATAGTTGTTTAGT ACATAGTATTAGAGTCTCTATAACCAAGTGGTATTGAGTTCGCTCCTTGTTATTCAAAGTAAAAGGTTTAATCTTAGCAC AAGGTAATTAAGTCTGTGCATTGTCCACGCTTCTAGCCCAACAAACTCTTGCCTGATGGGACTTGTTGGAAATATAATTA TAAAACTATATATGTCTTCACCAAACAACTTAAGCTTTTGGGATAGTTGATTAGTTTAATCTACTATGTTTGATTTTGTC ATTAGTTGTATTATGTTATTAACTTTGTATGGTTACAGGTCACATTGGGGGTTTCAACACTTCTTTCATATGTACCTGTT TCACTGGGTACTGCACATCAAGCTGGAGCCTTAACACTTCTGACATTTATGTTACTGCTTAATCACACGGTTCGAAAGCC ATCCTTGTCCCTTCTCAAATCTCTTCCTCAGGTTGTCAAAGCAAACTAA
CDS sequence (LotjaGi1g1v0011600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCGCATCCTTCATGTTTTTTCAATCCAGATTCACAATCAGAAATAGAGGACATCATGTGTCATTCACGAGGAGCTT TTCTAAGGTGGTTTCTGCTGGGGCTGAACATAAGGAGGGGTTGAAGCTGCTTGTTGCAGGAGGTGCTCATGCTCAGAAAG TGGTGGGAGTATGGCTATTTGGCTCTGCCGCATGGGTGTTTAGCATGGTGCTTCTTGGGGGTTTAACCAGACTCACTAGA TCTGGTCTTTCAATGACTGATTGGAAATTCACAGGTGGTCTTCCTCCTTTGTCAGATGAGGAATGGTTGAAAGAGTTTGA GAAATATAAGCAGTCACCTGAATACAAACGTGTTAACAAAGGGATGACGATTGAAGAATTCAAGTTCATATATTGGATGG AATATGCACATCGTATGTGGGGAAGGGCGCTAGGAGTTATTTTTGCTTTACCATATTCATATTTTCTCCATAAAGGGTAT ATTACCTTGAGATTAGGACTGAGACTTTCTGCTCTGTTTGCCCTGGGTGCTGGGCAGGGTCTCATTGGCTGGTGGATGGT CAAAAGTGGATTAGAGGAACCCCCAACTGAATATTCTCAACCAAGGGTAAGCCCTTATCGTCTTGCAGCTCACCTTACAT CAGCATTTGCTATTTACTGTGGCCTCTTTTGGACTGCACTTTCGGTTGTTATGCCAGAACCACCAGCTGAATCAGTTACG TGGGTTCGTGGAGCAGCTAAAGTAAGGAGACTTGCATTGCCTGTCAGCCTACTTGTTGGTCTCACTGCTGTCTCTGGTGC GTTTGTTGCTGGAAATGATGCTGGGCATGCATTTAATACTTTTCCGAAGATGGGTGATACATGGATACCAGAAGACATTT TTGAAATGAAACCTCTGATTCGAAATTTCTTTGAGAATACATCGACTGTACAGCTCGATCACCGTATCCTTGCAACTGCA ACTCTAATTTCCGTGGGTGCTTTGTGGGGGGCAACAAGAAAGCTGGACATACACCCTGCAGTACGATCTGTGATTGGAAG CATAGTTGGCATGGCAGCTCTTCAGGTCACATTGGGGGTTTCAACACTTCTTTCATATGTACCTGTTTCACTGGGTACTG CACATCAAGCTGGAGCCTTAACACTTCTGACATTTATGTTACTGCTTAATCACACGGTTCGAAAGCCATCCTTGTCCCTT CTCAAATCTCTTCCTCAGGTTGTCAAAGCAAACTAA
Protein sequence (LotjaGi1g1v0011600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIASFMFFQSRFTIRNRGHHVSFTRSFSKVVSAGAEHKEGLKLLVAGGAHAQKVVGVWLFGSAAWVFSMVLLGGLTRLTR SGLSMTDWKFTGGLPPLSDEEWLKEFEKYKQSPEYKRVNKGMTIEEFKFIYWMEYAHRMWGRALGVIFALPYSYFLHKGY ITLRLGLRLSALFALGAGQGLIGWWMVKSGLEEPPTEYSQPRVSPYRLAAHLTSAFAIYCGLFWTALSVVMPEPPAESVT WVRGAAKVRRLALPVSLLVGLTAVSGAFVAGNDAGHAFNTFPKMGDTWIPEDIFEMKPLIRNFFENTSTVQLDHRILATA TLISVGALWGATRKLDIHPAVRSVIGSIVGMAALQVTLGVSTLLSYVPVSLGTAHQAGALTLLTFMLLLNHTVRKPSLSL LKSLPQVVKAN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 53 | 53 | - | – | |
| PANTHER | 24 | 410 | 387 | 7.5E-193 | – | |
| PANTHER | 24 | 410 | 387 | 7.5E-193 | ||
| Hamap | 52 | 396 | 345 | 22.533 | ||
| Phobius | 54 | 75 | 22 | - | – | |
| TMHMM | 54 | 76 | 23 | - | – | |
| Pfam | 57 | 386 | 330 | 4.0E-115 | ||
| Phobius | 76 | 138 | 63 | - | – | |
| TMHMM | 139 | 156 | 18 | - | – | |
| Phobius | 139 | 157 | 19 | - | – | |
| Phobius | 158 | 168 | 11 | - | – | |
| Phobius | 169 | 187 | 19 | - | – | |
| TMHMM | 169 | 188 | 20 | - | – | |
| Phobius | 188 | 206 | 19 | - | – | |
| Phobius | 207 | 230 | 24 | - | – | |
| TMHMM | 208 | 230 | 23 | - | – | |
| Phobius | 231 | 250 | 20 | - | – | |
| TMHMM | 251 | 270 | 20 | - | – | |
| Phobius | 251 | 271 | 21 | - | – | |
| Phobius | 272 | 313 | 42 | - | – | |
| Phobius | 314 | 332 | 19 | - | – | |
| TMHMM | 314 | 331 | 18 | - | – | |
| Phobius | 333 | 343 | 11 | - | – | |
| Phobius | 344 | 367 | 24 | - | – | |
| TMHMM | 344 | 366 | 23 | - | – | |
| Phobius | 368 | 372 | 5 | - | – | |
| TMHMM | 371 | 393 | 23 | - | – | |
| Phobius | 373 | 393 | 21 | - | – | |
| Phobius | 394 | 411 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Heme a biosynthetic process | The chemical reactions and pathways resulting in the formation of heme a, a derivative of heme found in cytochrome aa3. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Oxidoreductase activity, acting on the CH-CH group of donors | Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi1g1v0011600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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