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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0011600 |
| Transcript ID | LotjaGi1g1v0011600.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heme A synthase; TAIR: AT5G56090.1 cytochrome c oxidase 15; Swiss-Prot: sp|Q9FKT8|COX15_ARATH Cytochrome c oxidase assembly protein COX15; TrEMBL-Plants: tr|A0A151U2K9|A0A151U2K9_CAJCA Cytochrome c oxidase assembly protein COX15 isogeny; Found in the gene: LotjaGi1g1v0011600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1414082..1417354) extracted from Lotus japonicus Gifu genome v1.2.
GAAGCCAAGTTCAGTTTAATCACATATCACACTTTGTATTGGATGATCGCATCCTTCATGTTTTTTCAATCCAGATTCAC AATCAGAAATAGAGTGTGAAATGTGTCAATGGTATTCTGGTGGATAAAAAAAGCTACAATTGTTGATTTTTATGCTTTGT GTGTGTGAATGTGTTTTTGTATCTGAGGAAAGTGTTATGGTGTTTTGATTAGGGACATCATGTGTCATTCACGAGGAGCT TTTCTAAGGTGGTTTCTGCTGGGGCTGAACATAAGGAGGGGTTGAAGCTGCTTGTTGCAGGAGGTGCTCATGCTCAGAAA GTGGTGGGAGTATGGCTATTTGGCTCTGCCGCATGGGTGTTTAGCATGGTGCTTCTTGGGGGTTTAACCAGACTCACTAG ATCTGGTCTTTCAATGACTGATTGGAAATTCACAGGTGGTCTTCCTCCTTTGTCAGATGAGGAATGGTTGAAAGAGTTTG AGAAATATAAGCAGTCACCTGAATACAAACGGTAAGATGCAAACAATTGCTGTAGCTCAGCATCATATACTTGAAATAAA CGTTTTTGGCACACCTATAATTTTTCATGAATTTTATAGGAAATATTCTGTTTCTTATTGTTCTGCCTAATTGAAAGTGT AACATATGGAATGCACAGAGGGATTTACTTATGCGAATTGAATGGTAAAACACTTCCCAACACTTGCACAGAAACCTTCC TGAAGATGGCTGAAATGAATGAATCCAACCTTATAAATTAGATGATTAATTTCTAAGGGATAATAACAATAGTACTCAAG TTTGTCATAAAAAATATCTACGTTTTGCTTAAGAAAAATTGTTTCGGTTATGTCTTTCAAGGAATATAGATGATAATAAG TATGATAACAATGGAGATAATTTACTAAATGAATCAATTTTTTAAAATTGGCATTAGGGGGGCTGTACCAATGGACATTT TTATTCAAGTGCTAATTACATCAATTTTTTAAAATTGGCCTCAGGGGGGCTGTGCCAATGGACATTTTTATTCAAGTGCT AATTACAATTTACAAGTTTAAGCGTTGATTATAGATCGATTGTAAAAATAAAAGGATTGATCAAGTGGAAGTGAGTTGAA GCTCCGCCTGAAAGAGCTGTAGTAGTTCTTATGAATGGTATGATGATAACTTATTGCAACTTGTTGCAGTGTTAACAAAG GGATGACGATTGAAGAATTCAAGTTCATATATTGGATGGAATATGCACATCGTATGTGGGGAAGGGCGCTAGGAGTTATT TTTGCTTTACCATATTCATATTTTCTCCATAAAGGGTATATTACCTTGAGATTAGGACTGAGACTTTCTGCTCTGTTTGC CCTGGGTGCTGGGCAGGGTCTCATTGGCTGGTGGATGGTCAAAAGTGGATTAGAGGTTGGAACATAAAATAAAATAAACG TCTTGTTTATTTCAAGTCAAATTGACTAGAACAGCCAGATTCTAATGACATTTTCCTTCCTTAGGAACCCCCAACTGAAT ATTCTCAACCAAGGGTAAGCCCTTATCGTCTTGCAGCTCACCTTACATCAGCATTTGCTATTTACTGTGGCCTCTTTTGG ACTGCACTTTCGGTTGTTATGCCAGAACCACCAGCTGAATCAGTTACGTGGGTTCGTGGAGCAGCTAAAGTAAGGAGACT TGCATTGCCTGTCAGCCTACTTGTTGGTCTCACTGCTGTCTCTGGTGCGTTTGTTGCTGGAAATGATGCTGTAAGCTTGC ACAACAGTTTCATGCCTATCATATTTGTGCTTGAAATTTTGATTGCGCCTTTGATGATGTTGAAAGATAATCATTTTGCT TCCATGTTGATTGCCAGGGGCATGCATTTAATACTTTTCCGAAGATGGGTGATACATGGATACCAGAAGACATTTTTGAA ATGAAACCTCTGATTCGAAATTTCTTTGAGAATACATCGACTGTACAGGTAATTCCATGCTGATTTATTACTGATAAGTT TTTAAAATTGTTGTACCTTTGTTCTTTTGACTTATACTCTAGATTGGTTTCTTATGCACTATTCAAGAGTTTTAAATTTT GCAACGAATGAAGTATTCAGAAATACTTTTTGAAGCATCTAATTTTGGAGAGGTTAGCAATTGATTTATCCTCATGACTG TGATTTGCCAGTCAAAATTTAAATTTCAAATGTCAGCAGAACTTTTCCATTTCTTTCTTCCTTTGAACTTCGAAGCCATG AGTTTATGTTGTTGGACACTTAGACTTGTCTGCTACAAGGCAATAAAGGCACTTCAGCCCAGTTCCTTTAGTGGTTTGTG CTTCGAAATTTAACAACATGAAGTTTAAATAAGTGTTTTGTTTTAACAGCTCGATCACCGTATCCTTGCAACTGCAACTC TAATTTCCGTGGGTGCTTTGTGGGGGGCAACAAGAAAGCTGGACATACACCCTGCAGTACGATCTGTGATTGGAAGCATA GTTGGCATGGCAGCTCTTCAGGTCATTATTTCAGTTTCCAGATTTATATGTCTATAACATTTTTCATTTTATGCTGTTGG GTTCCATTTTGTCACTGGTTAGCTTTTTACCTCATGATATATTGCCTCCCTCCCTTGTCTGAGATGAATACTCATACTTG TTCCATTAGCATTTTACTGATTCATGAACTAGTCGAAGATGATGATGATGGTAATAGCTAGATAAAATAAAAAAATTCAA GGAAAACTGTTTGATGCTTGATTTTTTGTCATCAGTCTACTGTATAATATAAAGTCATTTGTGTGTCCACCAAATAGCTT AAACTATTGAGATAGTTGTTTAGTACATAGTATTAGAGTCTCTATAACCAAGTGGTATTGAGTTCGCTCCTTGTTATTCA AAGTAAAAGGTTTAATCTTAGCACAAGGTAATTAAGTCTGTGCATTGTCCACGCTTCTAGCCCAACAAACTCTTGCCTGA TGGGACTTGTTGGAAATATAATTATAAAACTATATATGTCTTCACCAAACAACTTAAGCTTTTGGGATAGTTGATTAGTT TAATCTACTATGTTTGATTTTGTCATTAGTTGTATTATGTTATTAACTTTGTATGGTTACAGGTCACATTGGGGGTTTCA ACACTTCTTTCATATGTACCTGTTTCACTGGGTACTGCACATCAAGCTGGAGCCTTAACACTTCTGACATTTATGTTACT GCTTAATCACACGGTTCGAAAGCCATCCTTGTCCCTTCTCAAATCTCTTCCTCAGGTTGTCAAAGCAAACTAA
CDS sequence (LotjaGi1g1v0011600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCGGACATCATGTGTCATTCACGAGGAGCTTTTCTAAGGTGGTTTCTGCTGGGGCTGAACATAAGGAGGGGTTGAA GCTGCTTGTTGCAGGAGGTGCTCATGCTCAGAAAGTGGTGGGAGTATGGCTATTTGGCTCTGCCGCATGGGTGTTTAGCA TGGTGCTTCTTGGGGGTTTAACCAGACTCACTAGATCTGGTCTTTCAATGACTGATTGGAAATTCACAGGTGGTCTTCCT CCTTTGTCAGATGAGGAATGGTTGAAAGAGTTTGAGAAATATAAGCAGTCACCTGAATACAAACGTGTTAACAAAGGGAT GACGATTGAAGAATTCAAGTTCATATATTGGATGGAATATGCACATCGTATGTGGGGAAGGGCGCTAGGAGTTATTTTTG CTTTACCATATTCATATTTTCTCCATAAAGGGTATATTACCTTGAGATTAGGACTGAGACTTTCTGCTCTGTTTGCCCTG GGTGCTGGGCAGGGTCTCATTGGCTGGTGGATGGTCAAAAGTGGATTAGAGGAACCCCCAACTGAATATTCTCAACCAAG GGTAAGCCCTTATCGTCTTGCAGCTCACCTTACATCAGCATTTGCTATTTACTGTGGCCTCTTTTGGACTGCACTTTCGG TTGTTATGCCAGAACCACCAGCTGAATCAGTTACGTGGGTTCGTGGAGCAGCTAAAGTAAGGAGACTTGCATTGCCTGTC AGCCTACTTGTTGGTCTCACTGCTGTCTCTGGTGCGTTTGTTGCTGGAAATGATGCTGGGCATGCATTTAATACTTTTCC GAAGATGGGTGATACATGGATACCAGAAGACATTTTTGAAATGAAACCTCTGATTCGAAATTTCTTTGAGAATACATCGA CTGTACAGCTCGATCACCGTATCCTTGCAACTGCAACTCTAATTTCCGTGGGTGCTTTGTGGGGGGCAACAAGAAAGCTG GACATACACCCTGCAGTACGATCTGTGATTGGAAGCATAGTTGGCATGGCAGCTCTTCAGGTCACATTGGGGGTTTCAAC ACTTCTTTCATATGTACCTGTTTCACTGGGTACTGCACATCAAGCTGGAGCCTTAACACTTCTGACATTTATGTTACTGC TTAATCACACGGTTCGAAAGCCATCCTTGTCCCTTCTCAAATCTCTTCCTCAGGTTGTCAAAGCAAACTAA
Protein sequence (LotjaGi1g1v0011600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIGHHVSFTRSFSKVVSAGAEHKEGLKLLVAGGAHAQKVVGVWLFGSAAWVFSMVLLGGLTRLTRSGLSMTDWKFTGGLP PLSDEEWLKEFEKYKQSPEYKRVNKGMTIEEFKFIYWMEYAHRMWGRALGVIFALPYSYFLHKGYITLRLGLRLSALFAL GAGQGLIGWWMVKSGLEEPPTEYSQPRVSPYRLAAHLTSAFAIYCGLFWTALSVVMPEPPAESVTWVRGAAKVRRLALPV SLLVGLTAVSGAFVAGNDAGHAFNTFPKMGDTWIPEDIFEMKPLIRNFFENTSTVQLDHRILATATLISVGALWGATRKL DIHPAVRSVIGSIVGMAALQVTLGVSTLLSYVPVSLGTAHQAGALTLLTFMLLLNHTVRKPSLSLLKSLPQVVKAN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 38 | 38 | - | – | |
| PANTHER | 16 | 395 | 380 | 1.3E-192 | – | |
| PANTHER | 16 | 395 | 380 | 1.3E-192 | ||
| Hamap | 37 | 381 | 345 | 22.533 | ||
| Phobius | 39 | 60 | 22 | - | – | |
| TMHMM | 39 | 61 | 23 | - | – | |
| Pfam | 42 | 371 | 330 | 3.5E-115 | ||
| Phobius | 61 | 123 | 63 | - | – | |
| TMHMM | 124 | 141 | 18 | - | – | |
| Phobius | 124 | 142 | 19 | - | – | |
| Phobius | 143 | 153 | 11 | - | – | |
| TMHMM | 154 | 173 | 20 | - | – | |
| Phobius | 154 | 172 | 19 | - | – | |
| Phobius | 173 | 191 | 19 | - | – | |
| Phobius | 192 | 215 | 24 | - | – | |
| TMHMM | 193 | 215 | 23 | - | – | |
| Phobius | 216 | 235 | 20 | - | – | |
| Phobius | 236 | 256 | 21 | - | – | |
| TMHMM | 236 | 255 | 20 | - | – | |
| Phobius | 257 | 298 | 42 | - | – | |
| Phobius | 299 | 317 | 19 | - | – | |
| TMHMM | 299 | 316 | 18 | - | – | |
| Phobius | 318 | 328 | 11 | - | – | |
| TMHMM | 329 | 351 | 23 | - | – | |
| Phobius | 329 | 352 | 24 | - | – | |
| Phobius | 353 | 357 | 5 | - | – | |
| TMHMM | 356 | 378 | 23 | - | – | |
| Phobius | 358 | 378 | 21 | - | – | |
| Phobius | 379 | 396 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Heme a biosynthetic process | The chemical reactions and pathways resulting in the formation of heme a, a derivative of heme found in cytochrome aa3. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Oxidoreductase activity, acting on the CH-CH group of donors | Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi1g1v0011600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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