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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0017100 |
| Transcript ID | LotjaGi1g1v0017100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial import inner membrane translocase subunit TIM50; TAIR: AT1G55900.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q8VYE2|TIM50_ARATH Mitochondrial import inner membrane translocase subunit TIM50; TrEMBL-Plants: tr|V7B9A1|V7B9A1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0017100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2156578..2161043) extracted from Lotus japonicus Gifu genome v1.2.
CCACCATTGCCACCACCACCACCAACCTACCACCACTTCCATCACAACCGCCACCACCGTTATAATCACCTCCATATTCG ATTTTTATTATATATCATTATTCAATACTTCACTAAACATAAAATTGTATTAATTTAAACGATATGGTAAATTATACAGA GTATGACCAAACACTGGATAGTATAAGAAAGTTATCAGAGCTTATACTATCAGGCCTAATACTATCAGGTCTTATACTAT CAGGCTTTATACTATACGTCGCACCAAACGAACCCTTAATAAATAAATGGAAATAGCAACACCCAAACAGAGCATAGCGT ATTGATGGCTCTGGAAATCGCGCAAAGGCCGCAAAACCCTACTTGAACCCCTTTCATTCATCAAGCACACAGTATCATTA TCATCGCCGTCGCATCACAACCATGGCTCTGCGATTTCTCCGATCGCGAGCCAAATACGTCGCATCATCACCGAAGCGAT TCCTCTCAACCGATGCCGCCGCCGCCGCTTCTCCTCCTCCTCCTCCCACTGCCGCCTCCCCTAACCGCTGGAACTTCCTC AAATACGCTGTCGTTGGTGCCATCACCGGCGCCACTACCTTCGCCGGTTACGCCTCTTACGGTTCGTTTCACTTTCTTGC ATTTTCTTGTTCTTCTTCGTATCAATTTTCACCATATTTTTCAATTCTTTGGTTGGAATGCATTGTGCAGCTTACAATTT GGATGAAATAGAAGAGAAGACTAGGTCGTTTCGTGAATCGGCTAAGTACACTGCAGGCGATGGAGCCACTACTCTAGATG TGAGTGATCTTGATTGCTGATTCTATGTGTCATCTTATTTTCTTACATGGATGAATTGTTAGAACTACATTGATTGGTGA AATAGCTCTTCGAATTTGATTTGTTGTTATTTGTAATGCTGCATGTGCAATTAATAGATTGTCGAAATTTATGCCATTTG ATTCTGTGGTGGTCTCATTGAACCATGGTTCTTGATTATTTATGTAAACAACTTCAGTGATAGTGATAACAGATTAATAA TTATATTTTTTTTCTTCTTGGAAATGCACTTGGTGTATCTTGTTTGGGACTGATACAATGTCTTTGTTCCTTCCATTTAA ATGTTTGATGCATTAATAGACCACTCCACAGTGTACCATAGTTAGTATTAGTAGAGTGACATATTCTGGTCCACATTTTC TGCAGAAATTTCAAGGGTTGCTATACTCAACTGCAATGACAGGTGTGTTCCCTGAGCTTATATTAAATTAGCATTGATCT TCCCCTTAAAACTAATATTTTGTGTTCTCATTTCTTCTTGATATTCTCTTCCCTTAAGAGTGTAGTTATTATATGAATGG AATGGATGGATGAGTTCAGTGTTACCAAATAGCGGCTACTCCACTATAGCGTAGCTGGTTTTTGGCTAATCACGATGCCG CTATTGCCCACTATAGCGCGCTATTCCCTCTATTCGCTGATAAATAGCGGCCGAAATAGCGGATTTTTGGCTCACCGCGA TGGTCCGATCGCAATTTGATAACACTGGATGAGTTAATCATTTGAATGGTTATGTATTTCTCTTTTTTGTTTTGTGAATT TCTCTTGCTTATGGATAAGCCTGGACTTTTTTATACTGATCAACTGAAAATAGCGTGCTTAATTGCTTATGCACAACAAA TGCCTACATAATTTAACTAACAGTAATTTTCAGACACACCACAGAGATTGTCCAGTAATAGCAATTATCAATTAAAGGCC CCTAATTTCACCTCAGAACAATTTGCAAATGCATGAAAATATGGGATATGTGCATTATATGGAAGGGATAAGGCAGGGAA CGCAAGTGGGCAGTGGCAAGAACTTGTGCTGTTGAGGAAGACCGGTGCAGACAAATTAATATTGTATGCATTTCTTTGGG GGATGAGGGTCTTAAACAACTAATTAGTTGTATATTTGCATGTCTTTGTTTTTAGCAGCTTGCTGATTCTTTTGCATGTG AATGTAATATGACAGTGCCTGCTAAAGCAGTAGAGCTTTATGTGGATGCAAGAAGGCTAATTGAAGAACAAGTTAGGGTA TGTGCATGCTGTTTCTTCTCAGATTTTTGGTCAACATTTGGCCTCTTTTTTTTAAAACTTTTGTATATCATACATACCCT TGCGTTAAGGTTTTAATACTGTGCTCTTTTTGCTTCCTTTTAGAGTTATACTGAACCATACACGGACAAGCTCCTTCCTG ATTTGCTTCCTCAGGAGCAGCATGTGTTTACACTTGTTCTAGATCTCAATGAGACATTGATTCACTATATTTGGACGGTA AGGTTTCATCCTAAAATACACTTTCTTTTGGGTAGACTAATACGAAAGTTCTTTATAATGAATGATATGGTTGGTAATGT ATTGGTAAGGTTATGCTATATTTCTTTTATACAATGCATGTCGTAGAAATAAGTGTTAGATCTCTTATTTCTTTGCTACT TAGTACTACTCCTTATATAATGTAAACATCTGATCTGACTATGATATTGAACTTTGTTTTTTTTATTTGGTGTGTAAAGC GAGATACAGGGTGGCAGACTTTTAAAAGACCTGGAGTTGATGCCTTCTTAGAACATCTAGCTCAGTTCTACGAAATAGTG GTGTATACAGATGAGCAAAATATGGTAATCTGAATTTTCTGCTCTACATTCTGAATGGATACCTATTTTTCTTGAGTATT CTTACATTCTGGCTTTTGTTGATGTGCTGTGCAGTTTGTAGACCCTGTTATAGAAAGGCTGGATCCCAAACATTGCATCA GATATAGGCTGTCGAGGCCTGCTACAAAGTATCAGGATGGGAAACACTTCAGAGTATGTCTGAGCTATCTTTTTGTGTTA CTCTCTCTCAAATTATGTATGTGAATTCCTGTGGCAAACGTACAATAGATTGTGTCATATAATAGAAAACAATTGGTCTT GGAACTATTATCTTTTTTGTCACTGAAAAGTAATTTTACTTTATAACAAACCTATGATATTATATCATATGCTCATTCCT GTCATTTTATATCGATACTATATATTATAAACATAGTTGTGTTTGGATATTCTAATACTGAGATGTCCTCCGCTCTCTTT CACCCCTTCTTTTGCAGGACCTTGAAAAACTAAACAGAAATCCAGCAAAAGTTCTTTATTTGAGTGGCCATGCTTTGGAA AGTTGCTTACAACCTGACAACTGTGTCCCTATTAAGCCATGGCAGCAACAAGATAAAGATGACACGGCTCTTTTGGATTT TATACCATTTCTAGAGTGTAAGCATTTTATAAGTTTTGTTGAAGAATTGTTCATATTTTAAATGACTGTTTTGATTTCGT CCCATTCCTTGAGTATAAGTGCATTTCCCTAAGATATGTTTAAATAAATTCACGAATGAAATTATTGTTACTTTATTATG GTTGTGAATATTGCATTACCTTCTCCGTTATTTATACGCAGTTGTTGCCCGTAGTAGTCCAGCTGATATAAGACCAGTGC TACAATCATACCAAGGCTGTGATATTCCGAATGAATTCATCAGGCGATCCAAAGAGCATCAGAGGTAACATTTTGACACC TGGACATTTTTTATTCGGACACTTACTACATTTGCCTGACACCTTGTCACACGCGTGTTTGACACCTGTACACTCCCCTT CCCAAGCGTGTCCGTGCTTCACAGATAGGAATAGGATATGTATTCCTCCATAAAGCATGATGAATGACTCTTAATCTAGC ATATTTTATATTCATGATGAAGGTTTCTTTTGTTCGTGTATAAGTAATTGATGCTAATATTTTTAGTCGGTGTTTCTAAA TGATGCAGGAGGATGCAAGAACAGAAGCATCGTGGTCGCCTCTGGAAAAGTTGATCCTATCAGACGTTCTTCCTGAAGTT TAGGAAGTGAGATTGTCAGTTTCATTGCAAGTTGATTGTTCAGTTCATTAGAGATTTTGAAGTCAGTGATAGTTGACGAG TGATTACATCAAAATGTAGCTTTTGTTTCTTGAACTTTAATTCTTGAACAATCAATATTTTTTTGCCTATATAATTCTGT CGCTGGAAAGCACCTATTAGTTTCAGCGGTGAAGTTCTTTTTCGTCTGCTAGAAGAATGAATTCCTAATACATATGTTTC TTGCAAGATGGTTTAACCTTTTGGGAGGATATCTGCCCAGATGTAGCTATGGATGAATTTGCCCATCATAGCTGCATAGA TTGTACAACTGACATAATAAAAGATTTTACTTGTTCTTGTTTGGTTGGATTGTTCTGTTTGATACTTGATCCAGTTATAG TAGGAACTGTATAATCTAGTTAGAGTTTCTTTTGATGCTTACTTGATCTTCTTGTAGTTTCCCAACTGTATGATTGTTAA TTTGACTATTTGAGTGCTTGTTATACAAAAGTCCCTTACCTCCAGCTCAATTTGAATGGCTTGATA
CDS sequence (LotjaGi1g1v0017100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTGCGATTTCTCCGATCGCGAGCCAAATACGTCGCATCATCACCGAAGCGATTCCTCTCAACCGATGCCGCCGC CGCCGCTTCTCCTCCTCCTCCTCCCACTGCCGCCTCCCCTAACCGCTGGAACTTCCTCAAATACGCTGTCGTTGGTGCCA TCACCGGCGCCACTACCTTCGCCGGTTACGCCTCTTACGCTTACAATTTGGATGAAATAGAAGAGAAGACTAGGTCGTTT CGTGAATCGGCTAAGTACACTGCAGGCGATGGAGCCACTACTCTAGATAAATTTCAAGGGTTGCTATACTCAACTGCAAT GACAGTGCCTGCTAAAGCAGTAGAGCTTTATGTGGATGCAAGAAGGCTAATTGAAGAACAAGTTAGGAGTTATACTGAAC CATACACGGACAAGCTCCTTCCTGATTTGCTTCCTCAGGAGCAGCATGTGTTTACACTTGTTCTAGATCTCAATGAGACA TTGATTCACTATATTTGGACGCGAGATACAGGGTGGCAGACTTTTAAAAGACCTGGAGTTGATGCCTTCTTAGAACATCT AGCTCAGTTCTACGAAATAGTGGTGTATACAGATGAGCAAAATATGTTTGTAGACCCTGTTATAGAAAGGCTGGATCCCA AACATTGCATCAGATATAGGCTGTCGAGGCCTGCTACAAAGTATCAGGATGGGAAACACTTCAGAGACCTTGAAAAACTA AACAGAAATCCAGCAAAAGTTCTTTATTTGAGTGGCCATGCTTTGGAAAGTTGCTTACAACCTGACAACTGTGTCCCTAT TAAGCCATGGCAGCAACAAGATAAAGATGACACGGCTCTTTTGGATTTTATACCATTTCTAGAGTTTGTTGCCCGTAGTA GTCCAGCTGATATAAGACCAGTGCTACAATCATACCAAGGCTGTGATATTCCGAATGAATTCATCAGGCGATCCAAAGAG CATCAGAGGAGGATGCAAGAACAGAAGCATCGTGGTCGCCTCTGGAAAAGTTGA
Protein sequence (LotjaGi1g1v0017100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALRFLRSRAKYVASSPKRFLSTDAAAAASPPPPPTAASPNRWNFLKYAVVGAITGATTFAGYASYAYNLDEIEEKTRSF RESAKYTAGDGATTLDKFQGLLYSTAMTVPAKAVELYVDARRLIEEQVRSYTEPYTDKLLPDLLPQEQHVFTLVLDLNET LIHYIWTRDTGWQTFKRPGVDAFLEHLAQFYEIVVYTDEQNMFVDPVIERLDPKHCIRYRLSRPATKYQDGKHFRDLEKL NRNPAKVLYLSGHALESCLQPDNCVPIKPWQQQDKDDTALLDFIPFLEFVARSSPADIRPVLQSYQGCDIPNEFIRRSKE HQRRMQEQKHRGRLWKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 38 | 38 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| Phobius | 20 | 30 | 11 | - | – | |
| PANTHER | 22 | 333 | 312 | 2.3E-137 | – | |
| PANTHER | 22 | 333 | 312 | 2.3E-137 | – | |
| Phobius | 31 | 38 | 8 | - | – | |
| Phobius | 39 | 47 | 9 | - | – | |
| Phobius | 48 | 68 | 21 | - | – | |
| Phobius | 69 | 337 | 269 | - | – | |
| Gene3D | 135 | 320 | 186 | 3.5E-57 | ||
| SUPERFAMILY | 138 | 303 | 166 | 1.87E-39 | ||
| ProSiteProfiles | 146 | 290 | 145 | 35.935 | ||
| SMART | 149 | 277 | 129 | 6.5E-37 | ||
| CDD | 151 | 267 | 117 | 2.0329E-37 | – | |
| Pfam | 152 | 299 | 148 | 3.3E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0017100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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