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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0019200 |
| Transcript ID | LotjaGi1g1v0019200.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|G7K4G1|G7K4G1_MEDTR RNA-binding domain CCCH-type zinc finger protein; Found in the gene: LotjaGi1g1v0019200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2389420..2394472) extracted from Lotus japonicus Gifu genome v1.2.
GCAAAATATTTTGCCTCAAATCTGTGACTCTTTGACAGCTGTGAATGATTTTATCAAAAAGTTTTAAACTTTGAAGCCCA AAACAACAAATTTCACAACACTGAACACAGTCACATACATATTCAGTAGTGTACTTGCTTCAGTTACCGAGTTCAACTCA ACCATTTCACTTTCTTCAACAGAACTCCGAAAACAGAGAGAGTTTGAGAGAGATAACAACTACCCATTTTTCCTTTTTAC TCTCTCAATGCACTGGAACTAGAAAGATTTGATTTTTGTTCTTGTTGAGACATAAAGACTGGTTCTTTAAACCCTTGCAG CATTGTTCATCTCCTTCTCTTTGATGGGTAAGCAAGAAACTTTGAAAAGTTTGTTTCTTTATCTCATACTCTCTTAGATT GTTGTTGATTTTGCAAATGTGGGTGTGTTTGGTTGTGACAATTTCTTTCTTTCTTTCTTTCTTGTATTTTTTTTTTGTTT TTGATTTTGTTGGCTTTGGAATTTTTGTTGTGTGATTTGCTTTGAGTCTTGGAGAGAACGTTTATGGTAATTTCTGAATG TGTTTCCTTATTTTTCTACATTTGGAGAGAGGCCCATTTTCATTTTGCATTAAAAATACTTCCTTTTTGGGTGGTGACAG AGAAAATTGAGGAAAATAAAGTGCAAAATGGAGTAAATTTTTTGTTTTGTCAATTATAAAAATCTTACCCTCTTCGTGTG TTGTTGCTAGGTTATTCATAACTTGGTTTATGGAATAGGGTACCTTTTTGTAGAAGAACATAGCCTTTTGTGTTTCTGTT AGGTTTGTAGAATCTTTTCCCCAGAACTAGTACTTTTTTTGGTCAGTCATTTCTTAGGGTTTGTTTTCTCTGCAAGTTTC CTTGTAAAGTGAAGATTGTTTTTTTCTTTTCATTTTGTTGTTTTCCATGAGTTTTGTGCTAAATCTTTAATGATGCGGAG TTGAGATTCTTTTTACTAGTTTTCTGATCAAGTGTTCACTCAGTTTTGTTAATTTTGTTTTAACTTTTCGCAGTGGTGAG ATAAAAGCTATGGATATTTCAGACTACACAAGGATTGTATTTGACAAAATTCAGAAATTTGAGCCTGAGCATGCTTCAAA GATAATTGGCTATCTTCTTCTGCAAGACAATGGTGAGCAGAAAATGGCGAAATTGGCTTCGTGCCCGGACCAATTCATCG GCGAAGTCGCGTTTAAGGTGAAAACCGATCTTCAAAGGTTGGCTATTAAATCAGCCGTAATTCCAATTTTGCCTAACCCT CAGCAAGGTTTAAGCCATTTAGCAGTAATCTCTCCCAGAAATCTTCCTTCGCCACCAAACTTCCAGGTTCCCTCTCCCTA TTGGGATCCACTGTCTGCTAGAAATACCAATACTAATCCAGAATATAGGGCAATGAATTACTTGGATTCTATGATAGAAC TTCAGAAACAGACACAGTTGTTGAGTTTAGAGGATCATATAGAACCTGCAAATACTGGAACTGGAGGAATTGGAATTCCC AGTGATTACTTTGGCTTAGATGCTTCTGCAGCTAATGTGGGTGGAAAATCTGGCAGAAGGTTTTCGAGCCTGTCAGAATT TCCGTTGAAGATCTGTCACTATTTTAACAAAGGATACTGTAAGCATGGAACTAACTGTAGATACTATCATGGACATGTAC TCCCTGAGAATTTCTCTCAGATGTATGGAAATGACACTAATAGTGAGGATCAAGTGTTTTCACAAGGGTCACTAGCACAG TTGGAGTCAGAAATTATTGAGCTCCTGAAACAGAAAAGAGGCCATCCAATGTCAATTGCTTCACTGCCAATGGCGTACTA CGATAGATATAAGAAGGTATTGCAAGCAGATGGTTATTTGACTGAGAGCCAGAGACATGGTAAGTCTGGCTATAATTTGA CAAAGCTTCTTGAGCAACTGAATGGCAGTATTCGGCTAATCAGCAGGTGACCTCTATAAACTTCTATGAGCCCGTTCGGT TATAGACCAAAGAGCATTTATTGGAGGTTATATGGTATTTTTTCTAGTATAGAAGCTCCTATAAGTGCTATTTGGTGCAT TTTCAAACAGGCTCATATGTTCTTACATATTGAATTGAATGTCTCTTACTCTAGTTTGAATTTTATCATGGTTGATTTAC AGGCCTCATGGGCAGCATGCGGTGGTTCTGGCAGAAGATGCCCCAAAATACATTAGAGAGGGTGATTCTGCTCAAAATAT TAGTGCATCGCGACAAATATATTTGACATTTCCAGCTGACAGCACTTTCACAGAGGAAGATGTCTCAGACTACTTCAAGT ATTTTTTTGGTTTAACTACCTCAGCATATTCTCTTCTTTGCAGCTAATTGTTTGTGTTGATGAATTTCCTTTACATATTT GGCTTTGTAGCACATTTGGGTGTGTTGAAGATGTTAGGATCCCGTGCCAGCAGAGAAGGATGTTTGGATTTGTGACTTTT GCTGACCCAGAAACTGTTAAAATGATTTTGGAAAAGGGGAATCCCCACTATGTTCGTGGGTCTCGGGTGCTTGTGAAACC TTACAAGGAGAAGGCTAAGACTTTAGAAAGGTGAATTCCTTGTCTTTTCCTTTCATATGGATTTATTTATAAGCTCTTTA TGGCTTCAAATTCTCATTTAATATTTAGATAAGCTTGAAATGACTATTTAATTGTCAATTTGTCATCAATCTTGACAAGA GTTAGTATAATTTAGTGAAAGCTTATTCCTTGTTGTGATTCTCTAGTTCTTAGTTCTTCCTCTGTCCTCAATCCCCCTAT TTATAGTACTATTCAAACTTCAGGGGTATATCTTAGTCTTTATAAAATGTTTTTGCGCAAGGTTTTCCTTCTAGAGATAA GCTATTATTTCTCAGAACGTTTTCCTTAGTCCTAGAGGAATACACATTTTTTTCTGCTTCAGAGGGTACACAAAACACAA AACTTATGATTAGTATATAGTTATCTGAAGTTTCAAAATTTGTCTATATACTAGTATATAGTTATACATGCATTTTGAAA AAGTTTCTATATTGAATATCTTTTTCCCCATTAATAATTTCTGTATCTTCCAATTTGGATGCAGGAAGTACGGAGACAGA GGAGAGCACTCTGTTTATTGTTCACCACACTATGTAGACTTGGACTCTGAACTTGACTCAAGTATGACATAATCTACTTT GAAACCTAATTATCTCTTATGGTTAACATATTACAACAGCTTATTTTATGCCTTTATGATTAGCATTCTAATGTTATTTA GCTGTTTCAATTGAGCCTATTTGAATGCGAACCCAAGAGCACTTTTTAGAGCTTATCTAGTTTTTTTTTTCTGGTAGATA AGATCCAATAAGTTCTCTTTAGTTTGTATCCAAACATGATCAATTATTTGCGATGTGTTTGTGCTTCGCTTTCTTTCTTT TTTGTGGAAGACGCCATTGAAAAACCCAATGCAAAATTCATGTAGTGCCAATAAGTACTGGGAACCATAGATCTATAAGG AGGCAGCTGATTGAAGAGCAGGAGCAAGCCCTTGAATTTCAAAGGAGACGGCTTGCACAGTTGCAGTTTCTCCAACAACC TTTGTCCACTTCGCCTCATTTTGGTGTCTCCATTGATGAATTAAGAGTTCCAGATGGTGTGTAATAATACAGATTACATT TTTGCTTATCAAGTTTCAGTGTGTTCTTCCTATCCTTCTTTGTTATGCTAATTGAAGTAATTTCTCTTGCAGATAATTTC AATCTCCAGCCTTCAGAATCTTTAAGTTCTGCTCCGAATGATAGACCCAAGCAGGCAGACACCGATTCCTCTGATGAGAA CAGGCATGCTTCAATTTCTAATAGATTTCTATTGCTCTTCCACAATCGTCTGCTATGCCTTTTTATATATTTTGTAATTA CTCCAGTGTATTCTTTATAGTTATACCCATAGTTAGTAACTTGACTTGTGATATATTACTTGGAAATGGAATGTACATTT CAAGTCCTATGGTTAAGTGGTTTTGTCAATTCCTTATTTAAAATCCCTAATTCAAACACCTATTCATCATTTTTATGACG GCCATACTTTTCCTGTCACAATTCATGTTTTGTTAACTATGGATGATATTATTGTTTATTGATTTATTTTATTTGTAATT TTTTACAGCCATCAAGGATTCGATCTCCCGGACAGTCCATTTTCTTTTGCCAACATATAAAGTGAGATTTAGGCAGTCAT GTAGTTTCAGAAACACACAGGAGAAATAGAGTTACAACAGATCCAGGCCTAAGGCAGAAGCTTTTTTTTGGTACATAATA CAAGAACTATTTTCTCAACTAGCTCAGCAGTATAGTCAAATTCAGCAACTACATACAAGCAAGTGACATTTGAAGAATTT CCTCTTCACAACTGGGATTGCTGGAATTATAACATTTAATGATACATGTAAGAAGGTTATAGTTTTCATCAGACTTGGTT TTTAGCATAATCATGTAGTTACTAGTTAGGACTTTTCCAAAGTTATAGTGAATGAAAAAAATCAGGTATATGGGTTATTA CAGTTTTAGGTGAAGTTTGAAGAACCTTTTTTGAATCTATGGTTATGGTCTGAGGAGCTAGTTTACTCAGTATGAACAAC TTCAATAGCAGTTTATGGTAAGCCAATTTGAAGTATTTTGCATTCTTTATTAACTTTTGGATGCCTCTTCTTTGTCCTGA TAAAATGGTTCAAGTGCTTAAGTCATAATCAAAATGATTTGGTTTCGATTTGGAACACCTTAATGCAAATAACTTGCTTC CCAGCCATAAGTGTGTGGTGTTTATTTCTTTATTTGTCCTGTTTTTTTGGCTTTGTTTGGCATAGATTTTTGTGGTAGTG AGAGGAATATTTGTCGTTCTACATGAGTTTTCAATCTTGAATATGAACGACGGGAATTGAGTGATGCGGGCCATCATTGA CAAAGACATTGGTGAATGCATTCGTTTGTGGAAAGTGACATTCATGGATGATATGATCTTAGAGTTGAGACACATAAGTT GTACTATATTTTG
CDS sequence (LotjaGi1g1v0019200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATATTTCAGACTACACAAGGATTGTATTTGACAAAATTCAGAAATTTGAGCCTGAGCATGCTTCAAAGATAATTGG CTATCTTCTTCTGCAAGACAATGGTGAGCAGAAAATGGCGAAATTGGCTTCGTGCCCGGACCAATTCATCGGCGAAGTCG CGTTTAAGGTGAAAACCGATCTTCAAAGGTTGGCTATTAAATCAGCCGTAATTCCAATTTTGCCTAACCCTCAGCAAGGT TTAAGCCATTTAGCAGTAATCTCTCCCAGAAATCTTCCTTCGCCACCAAACTTCCAGGTTCCCTCTCCCTATTGGGATCC ACTGTCTGCTAGAAATACCAATACTAATCCAGAATATAGGGCAATGAATTACTTGGATTCTATGATAGAACTTCAGAAAC AGACACAGTTGTTGAGTTTAGAGGATCATATAGAACCTGCAAATACTGGAACTGGAGGAATTGGAATTCCCAGTGATTAC TTTGGCTTAGATGCTTCTGCAGCTAATGTGGGTGGAAAATCTGGCAGAAGGTTTTCGAGCCTGTCAGAATTTCCGTTGAA GATCTGTCACTATTTTAACAAAGGATACTGTAAGCATGGAACTAACTGTAGATACTATCATGGACATGTACTCCCTGAGA ATTTCTCTCAGATGTATGGAAATGACACTAATAGTGAGGATCAAGTGTTTTCACAAGGGTCACTAGCACAGTTGGAGTCA GAAATTATTGAGCTCCTGAAACAGAAAAGAGGCCATCCAATGTCAATTGCTTCACTGCCAATGGCGTACTACGATAGATA TAAGAAGGTATTGCAAGCAGATGGTTATTTGACTGAGAGCCAGAGACATGGTAAGTCTGGCTATAATTTGACAAAGCTTC TTGAGCAACTGAATGGCAGTATTCGGCTAATCAGCAGGCCTCATGGGCAGCATGCGGTGGTTCTGGCAGAAGATGCCCCA AAATACATTAGAGAGGGTGATTCTGCTCAAAATATTAGTGCATCGCGACAAATATATTTGACATTTCCAGCTGACAGCAC TTTCACAGAGGAAGATGTCTCAGACTACTTCAACACATTTGGGTGTGTTGAAGATGTTAGGATCCCGTGCCAGCAGAGAA GGATGTTTGGATTTGTGACTTTTGCTGACCCAGAAACTGTTAAAATGATTTTGGAAAAGGGGAATCCCCACTATGTTCGT GGGTCTCGGGTGCTTGTGAAACCTTACAAGGAGAAGGCTAAGACTTTAGAAAGGAAGTACGGAGACAGAGGAGAGCACTC TGTTTATTGTTCACCACACTATGTAGACTTGGACTCTGAACTTGACTCAATGCCAATAAGTACTGGGAACCATAGATCTA TAAGGAGGCAGCTGATTGAAGAGCAGGAGCAAGCCCTTGAATTTCAAAGGAGACGGCTTGCACAGTTGCAGTTTCTCCAA CAACCTTTGTCCACTTCGCCTCATTTTGGTGTCTCCATTGATGAATTAAGAGTTCCAGATGATAATTTCAATCTCCAGCC TTCAGAATCTTTAAGTTCTGCTCCGAATGATAGACCCAAGCAGGCAGACACCGATTCCTCTGATGAGAACAGGCATGCTT CAATTTCTAATAGATTTCTATTGCTCTTCCACAATCGTCTGCTATGCCTTTTTATATATTTTGTAATTACTCCAGTGTAT TCTTTATAG
Protein sequence (LotjaGi1g1v0019200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDISDYTRIVFDKIQKFEPEHASKIIGYLLLQDNGEQKMAKLASCPDQFIGEVAFKVKTDLQRLAIKSAVIPILPNPQQG LSHLAVISPRNLPSPPNFQVPSPYWDPLSARNTNTNPEYRAMNYLDSMIELQKQTQLLSLEDHIEPANTGTGGIGIPSDY FGLDASAANVGGKSGRRFSSLSEFPLKICHYFNKGYCKHGTNCRYYHGHVLPENFSQMYGNDTNSEDQVFSQGSLAQLES EIIELLKQKRGHPMSIASLPMAYYDRYKKVLQADGYLTESQRHGKSGYNLTKLLEQLNGSIRLISRPHGQHAVVLAEDAP KYIREGDSAQNISASRQIYLTFPADSTFTEEDVSDYFNTFGCVEDVRIPCQQRRMFGFVTFADPETVKMILEKGNPHYVR GSRVLVKPYKEKAKTLERKYGDRGEHSVYCSPHYVDLDSELDSMPISTGNHRSIRRQLIEEQEQALEFQRRRLAQLQFLQ QPLSTSPHFGVSIDELRVPDDNFNLQPSESLSSAPNDRPKQADTDSSDENRHASISNRFLLLFHNRLLCLFIYFVITPVY SL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 530 | 530 | 7.0E-252 | – | |
| PANTHER | 1 | 530 | 530 | 7.0E-252 | – | |
| Phobius | 1 | 538 | 538 | - | – | |
| Gene3D | 182 | 250 | 69 | 1.0E-5 | – | |
| ProSiteProfiles | 183 | 210 | 28 | 14.802 | ||
| SUPERFAMILY | 186 | 208 | 23 | 3.79E-5 | ||
| Pfam | 234 | 311 | 78 | 2.2E-9 | ||
| ProSiteProfiles | 234 | 318 | 85 | 10.959 | ||
| Gene3D | 317 | 428 | 112 | 4.0E-13 | ||
| ProSiteProfiles | 336 | 411 | 76 | 11.588 | ||
| SMART | 337 | 407 | 71 | 3.4E-9 | ||
| CDD | 338 | 407 | 70 | 1.11831E-35 | ||
| SUPERFAMILY | 346 | 420 | 75 | 4.48E-14 | ||
| Pfam | 347 | 403 | 57 | 3.6E-8 | ||
| Coils | 459 | 479 | 21 | - | – | |
| MobiDBLite | 504 | 530 | 27 | - | – | |
| MobiDBLite | 504 | 520 | 17 | - | – | |
| Phobius | 539 | 560 | 22 | - | – | |
| Phobius | 561 | 562 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi1g1v0019200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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