Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0025900 |
| Transcript ID | LotjaGi1g1v0025900.6 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SWAP (Suppressor-of-white-APricot)/surp domain protein, putative; TAIR: AT5G55100.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Swiss-Prot: sp|Q3USH5|SFSWA_MOUSE Splicing factor, suppressor of white-apricot homolog; TrEMBL-Plants: tr|K7KBH2|K7KBH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0025900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:3121141..3126148) extracted from Lotus japonicus Gifu genome v1.2.
TTTCAAATTCATCATCAAATTGGAAGCAATCGGAGAGTGGAGAAACGATGGATCTCGAGTTGGTTGGGCGACACGCGATG TTCTTCGACGACGACGCCATGGCGGCGTTCGTGAACTCGCCGGAAGCTCTGGTTGACTGGAACTCCCTCTCCATCGATCG CTACGATGTTCGCCACCTTCTCTCCGGTCCCCTTCCTCCCCGCCTCAAGCGCCGCCCTCCTCCTCCCGAACCTGACCTCG ATTACGAACGCTATCTCGACCTCCCTTCATCATCCCCTGACCATTACCAACAACAACAACCACAAGGTAAACCTAATCGT ACCGTACACAGCACTTTTTTCCTCTTCACTTTTTCCATTTCGTTTTGTTTTACTATTATTGGAGTTGCTTGATGGAATTG TAGTAGAAGAAATGGGAAATTTGATTGATGATTTTTGTTCTGACTGTTTATGTTTTGTGTTGCTCTCAGAAGAGAAATTG AAAAAAAAATTGTGAGGGTTGAGAGGTTAACTAGGGTAGAGGAAGTTTGTAAGAAAACTTCGGAAAAGTTTTGACTAGAA AATTGGTTTTGGACTTGATGGAGTTCACCTAGTGGCGATGATGATAAGGCTTGGTTGTTGACTTTTACTTGATGATGTTG CTTCTTAATGCGATGTAGGTAGAATGTTTCCTTACATGACATGATGAGAGGTTTGCTATGAATGAAATGATGTTAGATTG GTTCTCTTTTGTGTATTGTTATACAGAGGACTTCATATATCTTTGTAATTTATTGTGTGTATAGAGTGAAGGCTTTTAAT GAATCACTAGTAATCTATGAAGCACCGATTTCGACACAACACTTACACTTACACCTGCGACACGGCTAACCTCCAAAAAG TAGGACATCGGGACCCTGCATAGTAAGTTAAGAAAACGAGCTCTATGACAATGAGCTTCATAAAAAGATACTAAAAAACA CCGCTTTGTCTAAACAACAGAGCTAATTTATCTAACAGCTTCGCCTCCTTGTTTATTATTGTCATTGAAGTCTAGCCTCT AGTTCATCAAGTGATAAATTAGTAATTTCTTTAATGATTTTTAAAAAAAAATAAATGATGTAAATTCCCTAGAGGTGTCC AGCCAAGAAGAGATATCGGCTCAAGTGTCCGAGCTGCAAATTATTATTTTGTATTTGGACACGGTGAAGAATTGTGTTAC AAATGTCATGTTGGTGTTGGAGACCAGCAGAGGTATCCGTGCTTCATAGCTAGTAATTTTATAATATTTGTCCTTAAAAT AATCTTTAAACAATTGTGTTCAATTCACTCATCGTTTGGACACACTCTTATATTTGGTTGAGATATTACTTTAGTTGAGG CAATTAGGCGATGTGCAACGTTGGCTATCAAGTCAAAAAATTTTCTCTCTTTTGTCAGTGGATGTTGGAACAACTTTTTT CCCAACTTCCACCTAAGAATGTTGAGTTCTTTTGTTTGTACAACAACAATCTCCACATTTGCAGGATGGACTGTAATTTG CTACGGTTCCTGTGTCAGAATGCAAGTAAGGATATTTTCTCCTGGCTTCCGGTTATGTTTAATTTCTTTGGTGTTAGTGT CTTTACCATTCTAGGTGTATGATATTGTTGCTCTTGAGAATTATATGTGATTCTGATCATGGCTGTCGCCTTTCTGTGTT TGTTTAGATAATGATTCAGGTCCAGTGAATTCAGCTGGCTATCGAGCTGTTGCATTTTCATATGAAAATTCTAACGTGTC CATGGAGACGAAGGACAGTGATACTGACGCTGGTTTTCATCCTAACTTCCCAGTACCAGAAAACTTACTCCATAACCTGG TGAGTATCCCATCTCTTAAAATATAGTTTGTTGTGTTATTTTCAGATGTTACACATTTAATTGACGTTTCATTGTTTAAC CAATGTGATTAGGTGATAATTGTCTAGGGTACATGTGTTATTCTAAGGCTTATGATGTCTAAGTTTCAGATGCTCGGAGC ATATATGGAGTTCTTTTGACTCAAGGTAGCCATTCACAGGCACCTTGTTTCCTTTTGATATCATGAGAAGGGGTCATGCA GGTGGGATTAGGATGATAGAAATTCGTTGATTCTTTACCTCTTGAGAGCCAATGGATTGAAAAATATCTTCATAAAGTTC TGTTTCTTGATCTGTATGATTATCCAAGTATATGTGAGGTTTTCTTGTGTTTTTTAGTAAGATCTTTATGTACCTATATA TTCTGCTTGTAAACCCCCTTTTCAAAATTATACTTTGTTCTAATATTGAAATTCACATTTGCTGATGAAGAAACCATTTT TATTTGTTTTTCTTTTCCAGCCTCCAAGTGATAAGGTACATCAGATTATTTCAAGGACTGCAACGTTTGTAAGAAAACAT GGAAGCCAGTCAGAAATTATTCTGAGGGTGAAGCAAGGAGATAATCCAACATTTGGCTTCCTGATGCCTGATCATCATCT TCATCCATATTTTAGGTTTCTTGTTGATCATCAAGAACTTTTGAAAGCTAACATAGACGACGGTGACTCAACTGTGGACA AGAATAAAAGTAAGGGGCTTGATCAAACGGGTGGTGCACTGTCTTTGCTTGGATCTGTCTATGGATCTGGAGAGGATGAA GATGGTACAACTGAGAATACTTGTGACTTTGAAAGAGACAAATGTGAGGGAGCTGCTGTTGATGCTGCTGGTACAAGTGC TTCCCCAGAAACAGAACAGGCTGAATCATCTTCAAATACTGCCAATAAGGATGGAAGCATATCTAAAAGTCCAGTGCCCT CTTTGAAAGAAAGAGTCCCTGTTATTAAGCGGAATCACTCTATCAGTACTGTTAAGACAGCGACTGCAGCTCGAGCAAAA ACAGCTGATGACTTGGATTCAGCATCTAATGCTGCAAACAAGTCACAAACTTATGTGCCTAGTACTGCTAAGATTGAACT ACCTGTTGTTGAACCTCCATCTGACTTGAAAAGAGTTATTGAGAGGATAGTTGAGTTCGTCTTAAAAAATGGCAAACAAG TTGAGGCTGTTCTTGCTGAACAAGATCGTGCTCATGGAAGGTTCCCATTTCTTCTGCCATCTAATCGATATCATACTTAC TATCTAAAAGCTCTTCAAAATGCTGACGAGGTGTGTTTCTCAGTTGTATTTTCCTGCTATCCTTTTTGTAACTATTTTGT TGGGGTTAAGGAGGTATTTTATGCACCAAGTAAATTCAATGAATACTTTAGGACACGTTCGTTTGATGAATTTTAAGGTA TTGCTAAATGCATATTTTAGCTGCAACTAACTGATCTTTCTATTTGCTTTCAGGGTAAGTTACCAGGCAAGGACCACCAG AAACACAATTCATCAGGTCGTGCAGGGGACAATACTGCTGTACATGAAGAAAGTGATGATCTCTCATGTGGATCTATGGG TTCTGATCTACCAAATGATATAGACAGAAAAGAGAAATTCAAGATGATTATTGGCAAGTCAAAAAAGGATGGTCAAGATC CAACTCCCAAAGACTGCCATTCTCAAAACACAGTTGGCATGGATGCAGCATCAGCAGCTGCTATTCTTCAGGCTGCGACT AGGGGTATTAAAAACCCTAATTTAGATATTTTTACCAAGACATCAAGTAGTAGTGTTCATGGCCTTGGAGGTGATGGTGG GTATTTGTCCACTTTTCATCAAAATCTGGATGCTCCTATCCCTGTTACCAAGGCTATTGCAGAAACAGTAGCTATTGCCG CAGCTAGGGAAGCAGACTCCTCTGAAGCACATATGACTAAAGAGCAGAAACTTAAGGCAGAGAGATTGAAACGAGCAAAG ATGTTTGCAGCCATGCTAAAAAGTGGAGTTGGAGCATTGAAAAATGACCTGCCACGAGCTTTATCCGTTGAGCCACCTGG CTCTGGTCTTTCAGGTTCAGATGCTGAGACTGGGAATCCTGTGGTTAAAGAAAGGGAAGGAAGCTCCGTTCCATTTGATG TGGATAATTCAGATATAAGTAAGTCTGAGGAGAAGCATTCTATTGATGATTCAGATAAAAGTCAGAAATCTGAGGAGAAA CATGCTGTTGATGATATTGAAAGGCGATCAAAAAGAAAGTACCGTTCCAGATCTAGTAGACATGAAGAGGAGGAAGAAGA GGAGGAGGAGGAGGAAGAAGAAAAGAGAGAAGATGTAAGGGATCATAAAAGATCCAGAAAAAAGCATCGATCTCATCGAT CTTCACACACCAGTCGGGACAGGGATAGGGACGGACGCAAGCACAAGAGAAGACATTCCTCCTCGAAAGACAAGTATTCT TACAGGGGAGCTAAACATGGCATCTCTGATGATGAGCATCAACACTCAAGTCATCATCATAAATACGATAGCTCCTCCGA TGAAAAGCACCGATCTTCAAGACGACGACAAAGAGAAGACAGCATGTCAGACCATGAGCATAAACATTCACGACGGCATA AACATGAGACCTCATCTGAGGATGAGCGTAGACACCGAAGCAGACATACAAAGCATAAGAGCAGATCTCATGTTGAAAGA GAATCAGAGTTGGAGGAGGGGGAGGTAATGAAATCAGATAAGTCTCAACAAGCAAGTGAGGTTGAACGTGCTAGCAGAGA GCCTTCTGCCAGTTTATCGAATGCAAACCATGGGCCAGAAATAAGTGATGTCTCTGATGAGCTTAGAGCCAAAATTCGAG CCATGTTGGCGGCTAACTTATAAAAGCTTCACAGGGTTGATGGCAACTCTATTGTTTTTCCTCTGTAATATCATGTACTC CATTTTCCCATCAGGCAGAAATCGTTATTGATTTGCTTCTTGATTCCTTTATTTGACTTTGTCTTACCTCGCCAATTGAA TAGATTCAGGTAGCAGTCAGGATAATTTTGCGTATCAATTTTTAGTAATTACTAACACTAATAGGCATTAACATGAGAAG GGGGTTATTTCCCTTTCAATTTTGAACAAACTAACAATAAAGATATGC
CDS sequence (LotjaGi1g1v0025900.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCAACGTTGGCTATCAAGTCAAAAAATTTTCTCTCTTTTGTCAGTGGATGTTGGAACAACTTTTTTCCCAACTTCC ACCTAAGAATGTTGAGTTCTTTTGTTTGTACAACAACAATCTCCACATTTGCAGGATGGACTGTAATTTGCTACGGTTCC TGTGTCAGAATGCAAATAATGATTCAGGTCCAGTGAATTCAGCTGGCTATCGAGCTGTTGCATTTTCATATGAAAATTCT AACGTGTCCATGGAGACGAAGGACAGTGATACTGACGCTGGTTTTCATCCTAACTTCCCAGTACCAGAAAACTTACTCCA TAACCTGCCTCCAAGTGATAAGGTACATCAGATTATTTCAAGGACTGCAACGTTTGTAAGAAAACATGGAAGCCAGTCAG AAATTATTCTGAGGGTGAAGCAAGGAGATAATCCAACATTTGGCTTCCTGATGCCTGATCATCATCTTCATCCATATTTT AGGTTTCTTGTTGATCATCAAGAACTTTTGAAAGCTAACATAGACGACGGTGACTCAACTGTGGACAAGAATAAAAGTAA GGGGCTTGATCAAACGGGTGGTGCACTGTCTTTGCTTGGATCTGTCTATGGATCTGGAGAGGATGAAGATGGTACAACTG AGAATACTTGTGACTTTGAAAGAGACAAATGTGAGGGAGCTGCTGTTGATGCTGCTGGTACAAGTGCTTCCCCAGAAACA GAACAGGCTGAATCATCTTCAAATACTGCCAATAAGGATGGAAGCATATCTAAAAGTCCAGTGCCCTCTTTGAAAGAAAG AGTCCCTGTTATTAAGCGGAATCACTCTATCAGTACTGTTAAGACAGCGACTGCAGCTCGAGCAAAAACAGCTGATGACT TGGATTCAGCATCTAATGCTGCAAACAAGTCACAAACTTATGTGCCTAGTACTGCTAAGATTGAACTACCTGTTGTTGAA CCTCCATCTGACTTGAAAAGAGTTATTGAGAGGATAGTTGAGTTCGTCTTAAAAAATGGCAAACAAGTTGAGGCTGTTCT TGCTGAACAAGATCGTGCTCATGGAAGGTTCCCATTTCTTCTGCCATCTAATCGATATCATACTTACTATCTAAAAGCTC TTCAAAATGCTGACGAGGGTAAGTTACCAGGCAAGGACCACCAGAAACACAATTCATCAGGTCGTGCAGGGGACAATACT GCTGTACATGAAGAAAGTGATGATCTCTCATGTGGATCTATGGGTTCTGATCTACCAAATGATATAGACAGAAAAGAGAA ATTCAAGATGATTATTGGCAAGTCAAAAAAGGATGGTCAAGATCCAACTCCCAAAGACTGCCATTCTCAAAACACAGTTG GCATGGATGCAGCATCAGCAGCTGCTATTCTTCAGGCTGCGACTAGGGGTATTAAAAACCCTAATTTAGATATTTTTACC AAGACATCAAGTAGTAGTGTTCATGGCCTTGGAGGTGATGGTGGGTATTTGTCCACTTTTCATCAAAATCTGGATGCTCC TATCCCTGTTACCAAGGCTATTGCAGAAACAGTAGCTATTGCCGCAGCTAGGGAAGCAGACTCCTCTGAAGCACATATGA CTAAAGAGCAGAAACTTAAGGCAGAGAGATTGAAACGAGCAAAGATGTTTGCAGCCATGCTAAAAAGTGGAGTTGGAGCA TTGAAAAATGACCTGCCACGAGCTTTATCCGTTGAGCCACCTGGCTCTGGTCTTTCAGGTTCAGATGCTGAGACTGGGAA TCCTGTGGTTAAAGAAAGGGAAGGAAGCTCCGTTCCATTTGATGTGGATAATTCAGATATAAGTAAGTCTGAGGAGAAGC ATTCTATTGATGATTCAGATAAAAGTCAGAAATCTGAGGAGAAACATGCTGTTGATGATATTGAAAGGCGATCAAAAAGA AAGTACCGTTCCAGATCTAGTAGACATGAAGAGGAGGAAGAAGAGGAGGAGGAGGAGGAAGAAGAAAAGAGAGAAGATGT AAGGGATCATAAAAGATCCAGAAAAAAGCATCGATCTCATCGATCTTCACACACCAGTCGGGACAGGGATAGGGACGGAC GCAAGCACAAGAGAAGACATTCCTCCTCGAAAGACAAGTATTCTTACAGGGGAGCTAAACATGGCATCTCTGATGATGAG CATCAACACTCAAGTCATCATCATAAATACGATAGCTCCTCCGATGAAAAGCACCGATCTTCAAGACGACGACAAAGAGA AGACAGCATGTCAGACCATGAGCATAAACATTCACGACGGCATAAACATGAGACCTCATCTGAGGATGAGCGTAGACACC GAAGCAGACATACAAAGCATAAGAGCAGATCTCATGTTGAAAGAGAATCAGAGTTGGAGGAGGGGGAGGTAATGAAATCA GATAAGTCTCAACAAGCAAGTGAGGTTGAACGTGCTAGCAGAGAGCCTTCTGCCAGTTTATCGAATGCAAACCATGGGCC AGAAATAAGTGATGTCTCTGATGAGCTTAGAGCCAAAATTCGAGCCATGTTGGCGGCTAACTTATAA
Protein sequence (LotjaGi1g1v0025900.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCNVGYQVKKFSLFCQWMLEQLFSQLPPKNVEFFCLYNNNLHICRMDCNLLRFLCQNANNDSGPVNSAGYRAVAFSYENS NVSMETKDSDTDAGFHPNFPVPENLLHNLPPSDKVHQIISRTATFVRKHGSQSEIILRVKQGDNPTFGFLMPDHHLHPYF RFLVDHQELLKANIDDGDSTVDKNKSKGLDQTGGALSLLGSVYGSGEDEDGTTENTCDFERDKCEGAAVDAAGTSASPET EQAESSSNTANKDGSISKSPVPSLKERVPVIKRNHSISTVKTATAARAKTADDLDSASNAANKSQTYVPSTAKIELPVVE PPSDLKRVIERIVEFVLKNGKQVEAVLAEQDRAHGRFPFLLPSNRYHTYYLKALQNADEGKLPGKDHQKHNSSGRAGDNT AVHEESDDLSCGSMGSDLPNDIDRKEKFKMIIGKSKKDGQDPTPKDCHSQNTVGMDAASAAAILQAATRGIKNPNLDIFT KTSSSSVHGLGGDGGYLSTFHQNLDAPIPVTKAIAETVAIAAAREADSSEAHMTKEQKLKAERLKRAKMFAAMLKSGVGA LKNDLPRALSVEPPGSGLSGSDAETGNPVVKEREGSSVPFDVDNSDISKSEEKHSIDDSDKSQKSEEKHAVDDIERRSKR KYRSRSSRHEEEEEEEEEEEEEKREDVRDHKRSRKKHRSHRSSHTSRDRDRDGRKHKRRHSSSKDKYSYRGAKHGISDDE HQHSSHHHKYDSSSDEKHRSSRRRQREDSMSDHEHKHSRRHKHETSSEDERRHRSRHTKHKSRSHVERESELEEGEVMKS DKSQQASEVERASREPSASLSNANHGPEISDVSDELRAKIRAMLAANL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 66 | 847 | 782 | 4.7E-193 | ||
| PANTHER | 66 | 847 | 782 | 4.7E-193 | – | |
| SUPERFAMILY | 100 | 165 | 66 | 8.24E-18 | ||
| Gene3D | 111 | 167 | 57 | 7.8E-20 | ||
| SMART | 116 | 169 | 54 | 2.4E-16 | ||
| Pfam | 117 | 165 | 49 | 1.9E-12 | ||
| ProSiteProfiles | 118 | 160 | 43 | 14.9 | ||
| MobiDBLite | 229 | 266 | 38 | - | – | |
| MobiDBLite | 235 | 258 | 24 | - | – | |
| SUPERFAMILY | 306 | 374 | 69 | 5.36E-14 | ||
| Gene3D | 321 | 378 | 58 | 8.3E-14 | ||
| SMART | 326 | 379 | 54 | 8.5E-10 | ||
| Pfam | 327 | 374 | 48 | 2.6E-9 | ||
| ProSiteProfiles | 328 | 370 | 43 | 14.441 | ||
| MobiDBLite | 379 | 421 | 43 | - | – | |
| MobiDBLite | 379 | 393 | 15 | - | – | |
| MobiDBLite | 571 | 831 | 261 | - | – | |
| MobiDBLite | 605 | 650 | 46 | - | – | |
| Coils | 639 | 673 | 35 | - | – | |
| MobiDBLite | 670 | 684 | 15 | - | – | |
| MobiDBLite | 705 | 773 | 69 | - | – | |
| MobiDBLite | 784 | 809 | 26 | - | – | |
| MobiDBLite | 810 | 828 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi1g1v0025900.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…