Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0025900 |
| Transcript ID | LotjaGi1g1v0025900.8 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SWAP (Suppressor-of-white-APricot)/surp domain protein, putative; TAIR: AT5G55100.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Swiss-Prot: sp|Q3USH5|SFSWA_MOUSE Splicing factor, suppressor of white-apricot homolog; TrEMBL-Plants: tr|I1M6P0|I1M6P0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0025900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:3121271..3126117) extracted from Lotus japonicus Gifu genome v1.2.
GGAGAGTGGAGAAACGATGGATCTCGAGTTGGTTGGGCGACACGCGATGTTCTTCGACGACGACGCCATGGCGGCGTTCG TGAACTCGCCGGAAGCTCTGGTTGACTGGAACTCCCTCTCCATCGATCGCTACGATGTTCGCCACCTTCTCTCCGGTCCC CTTCCTCCCCGCCTCAAGCGCCGCCCTCCTCCTCCCGAACCTGACCTCGATTACGAACGCTATCTCGACCTCCCTTCATC ATCCCCTGACCATTACCAACAACAACAACCACAAGGTAAACCTAATCGTACCGTACACAGCACTTTTTTCCTCTTCACTT TTTCCATTTCGTTTTGTTTTACTATTATTGGAGTTGCTTGATGGAATTGTAGTAGAAGAAATGGGAAATTTGATTGATGA TTTTTGTTCTGACTGTTTATGTTTTGTGTTGCTCTCAGAAGAGAAATTGAAAAAAAAATTGTGAGGGTTGAGAGGTTAAC TAGGGTAGAGGAAGTTTGTAAGAAAACTTCGGAAAAGTTTTGACTAGAAAATTGGTTTTGGACTTGATGGAGTTCACCTA GTGGCGATGATGATAAGGCTTGGTTGTTGACTTTTACTTGATGATGTTGCTTCTTAATGCGATGTAGGTAGAATGTTTCC TTACATGACATGATGAGAGGTTTGCTATGAATGAAATGATGTTAGATTGGTTCTCTTTTGTGTATTGTTATACAGAGGAC TTCATATATCTTTGTAATTTATTGTGTGTATAGAGTGAAGGCTTTTAATGAATCACTAGTAATCTATGAAGCACCGATTT CGACACAACACTTACACTTACACCTGCGACACGGCTAACCTCCAAAAAGTAGGACATCGGGACCCTGCATAGTAAGTTAA GAAAACGAGCTCTATGACAATGAGCTTCATAAAAAGATACTAAAAAACACCGCTTTGTCTAAACAACAGAGCTAATTTAT CTAACAGCTTCGCCTCCTTGTTTATTATTGTCATTGAAGTCTAGCCTCTAGTTCATCAAGTGATAAATTAGTAATTTCTT TAATGATTTTTAAAAAAAAATAAATGATGTAAATTCCCTAGAGGTGTCCAGCCAAGAAGAGATATCGGCTCAAGTGTCCG AGCTGCAAATTATTATTTTGTATTTGGACACGGTGAAGAATTGTGTTACAAATGTCATGTTGGTGTTGGAGACCAGCAGA GGTATCCGTGCTTCATAGCTAGTAATTTTATAATATTTGTCCTTAAAATAATCTTTAAACAATTGTGTTCAATTCACTCA TCGTTTGGACACACTCTTATATTTGGTTGAGATATTACTTTAGTTGAGGCAATTAGGCGATGTGCAACGTTGGCTATCAA GTCAAAAAATTTTCTCTCTTTTGTCAGTGGATGTTGGAACAACTTTTTTCCCAACTTCCACCTAAGAATGTTGAGTTCTT TTGTTTGTACAACAACAATCTCCACATTTGCAGGATGGACTGTAATTTGCTACGGTTCCTGTGTCAGAATGCAAGTAAGG ATATTTTCTCCTGGCTTCCGGTTATGTTTAATTTCTTTGGTGTTAGTGTCTTTACCATTCTAGGTGTATGATATTGTTGC TCTTGAGAATTATATGTGATTCTGATCATGGCTGTCGCCTTTCTGTGTTTGTTTAGATAATGATTCAGGTCCAGTGAATT CAGCTGGCTATCGAGCTGTTGCATTTTCATATGAAAATTCTAACGTGTCCATGGAGACGAAGGACAGTGATACTGACGCT GGTTTTCATCCTAACTTCCCAGTACCAGAAAACTTACTCCATAACCTGGTGAGTATCCCATCTCTTAAAATATAGTTTGT TGTGTTATTTTCAGATGTTACACATTTAATTGACGTTTCATTGTTTAACCAATGTGATTAGGTGATAATTGTCTAGGGTA CATGTGTTATTCTAAGGCTTATGATGTCTAAGTTTCAGATGCTCGGAGCATATATGGAGTTCTTTTGACTCAAGGTAGCC ATTCACAGGCACCTTGTTTCCTTTTGATATCATGAGAAGGGGTCATGCAGGTGGGATTAGGATGATAGAAATTCGTTGAT TCTTTACCTCTTGAGAGCCAATGGATTGAAAAATATCTTCATAAAGTTCTGTTTCTTGATCTGTATGATTATCCAAGTAT ATGTGAGGTTTTCTTGTGTTTTTTAGTAAGATCTTTATGTACCTATATATTCTGCTTGTAAACCCCCTTTTCAAAATTAT ACTTTGTTCTAATATTGAAATTCACATTTGCTGATGAAGAAACCATTTTTATTTGTTTTTCTTTTCCAGCCTCCAAGTGA TAAGGTACATCAGATTATTTCAAGGACTGCAACGTTTGTAAGAAAACATGGAAGCCAGTCAGAAATTATTCTGAGGGTGA AGCAAGGAGATAATCCAACATTTGGCTTCCTGATGCCTGATCATCATCTTCATCCATATTTTAGGTTTCTTGTTGATCAT CAAGAACTTTTGAAAGCTAACATAGACGACGGTGACTCAACTGTGGACAAGAATAAAAGTAAGGGGCTTGATCAAACGGG TGGTGCACTGTCTTTGCTTGGATCTGTCTATGGATCTGGAGAGGATGAAGATGGTACAACTGAGAATACTTGTGACTTTG AAAGAGACAAATGTGAGGGAGCTGCTGTTGATGCTGCTGGTACAAGTGCTTCCCCAGAAACAGAACAGGCTGAATCATCT TCAAATACTGCCAATAAGGATGGAAGCATATCTAAAAGTCCAGTGCCCTCTTTGAAAGAAAGAGTCCCTGTTATTAAGCG GAATCACTCTATCAGTACTGTTAAGACAGCGACTGCAGCTCGAGCAAAAACAGCTGATGACTTGGATTCAGCATCTAATG CTGCAAACAAGTCACAAACTTATGTGCCTAGTACTGCTAAGATTGAACTACCTGTTGTTGAACCTCCATCTGACTTGAAA AGAGTTATTGAGAGGATAGTTGAGTTCGTCTTAAAAAATGGCAAACAAGTTGAGGCTGTTCTTGCTGAACAAGATCGTGC TCATGGAAGGTTCCCATTTCTTCTGCCATCTAATCGATATCATACTTACTATCTAAAAGCTCTTCAAAATGCTGACGAGG TGTGTTTCTCAGTTGTATTTTCCTGCTATCCTTTTTGTAACTATTTTGTTGGGGTTAAGGAGGTATTTTATGCACCAAGT AAATTCAATGAATACTTTAGGACACGTTCGTTTGATGAATTTTAAGGTATTGCTAAATGCATATTTTAGCTGCAACTAAC TGATCTTTCTATTTGCTTTCAGGGTAAGTTACCAGGCAAGGACCACCAGAAACACAATTCATCAGGTCGTGCAGGGGACA ATACTGCTGTACATGAAGAAAGTGATGATCTCTCATGTGGATCTATGGGTTCTGATCTACCAAATGATATAGACAGAAAA GAGAAATTCAAGATGATTATTGGCAAGTCAAAAAAGGATGGTCAAGATCCAACTCCCAAAGACTGCCATTCTCAAAACAC AGTTGGCATGGATGCAGCATCAGCAGCTGCTATTCTTCAGGCTGCGACTAGGGGTATTAAAAACCCTAATTTAGATATTT TTACCAAGACATCAAGTAGTAGTGTTCATGGCCTTGGAGGTGATGGTGGGTATTTGTCCACTTTTCATCAAAATCTGGAT GCTCCTATCCCTGTTACCAAGGCTATTGCAGAAACAGTAGCTATTGCCGCAGCTAGGGAAGCAGACTCCTCTGAAGCACA TATGACTAAAGAGCAGAAACTTAAGGCAGAGAGATTGAAACGAGCAAAGATGTTTGCAGCCATGCTAAAAAGTGGAGTTG GAGCATTGAAAAATGACCTGCCACGAGCTTTATCCGTTGAGCCACCTGGCTCTGGTCTTTCAGGTTCAGATGCTGAGACT GGGAATCCTGTGGTTAAAGAAAGGGAAGGAAGCTCCGTTCCATTTGATGTGGATAATTCAGATATAAGTAAGTCTGAGGA GAAGCATTCTATTGATGATTCAGATAAAAGTCAGAAATCTGAGGAGAAACATGCTGTTGATGATATTGAAAGGCGATCAA AAAGAAAGTACCGTTCCAGATCTAGTAGACATGAAGAGGAGGAAGAAGAGGAGGAGGAGGAGGAAGAAGAAAAGAGAGAA GATGTAAGGGATCATAAAAGATCCAGAAAAAAGCATCGATCTCATCGATCTTCACACACCAGTCGGGACAGGGATAGGGA CGGACGCAAGCACAAGAGAAGACATTCCTCCTCGAAAGACAAGTATTCTTACAGGGGAGCTAAACATGGCATCTCTGATG ATGAGCATCAACACTCAAGTCATCATCATAAATACGATAGCTCCTCCGATGAAAAGCACCGATCTTCAAGACGACGACAA AGAGAAGACAGCATGTCAGACCATGAGCATAAACATTCACGACGGCATAAACATGAGACCTCATCTGAGGATGAGCGTAG ACACCGAAGCAGACATACAAAGCATAAGAGCAGATCTCATGTTGAAAGAGAATCAGAGTTGGAGGAGGGGGAGGTAATGA AATCAGATAAGTCTCAACAAGCAAGTGAGGTTGAACGTGCTAGCAGAGAGCCTTCTGCCAGTTTATCGAATGCAAACCAT GGGCCAGAAATAAGTGATGTCTCTGATGAGCTTAGAGCCAAAATTCGAGCCATGTTGGCGGCTAACTTATAAAAGCTTCA CAGGGTTGATGGCAACTCTATTGTTTTTCCTCTGTAATATCATGTACTCCATTTTCCCATCAGGCAGAAATCGTTATTGA TTTGCTTCTTGATTCCTTTATTTGACTTTGTCTTACCTCGCCAATTG
CDS sequence (LotjaGi1g1v0025900.8) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGACGAAGGACAGTGATACTGACGCTGGTTTTCATCCTAACTTCCCAGTACCAGAAAACTTACTCCATAACCTGCC TCCAAGTGATAAGGTACATCAGATTATTTCAAGGACTGCAACGTTTGTAAGAAAACATGGAAGCCAGTCAGAAATTATTC TGAGGGTGAAGCAAGGAGATAATCCAACATTTGGCTTCCTGATGCCTGATCATCATCTTCATCCATATTTTAGGTTTCTT GTTGATCATCAAGAACTTTTGAAAGCTAACATAGACGACGGTGACTCAACTGTGGACAAGAATAAAAGTAAGGGGCTTGA TCAAACGGGTGGTGCACTGTCTTTGCTTGGATCTGTCTATGGATCTGGAGAGGATGAAGATGGTACAACTGAGAATACTT GTGACTTTGAAAGAGACAAATGTGAGGGAGCTGCTGTTGATGCTGCTGGTACAAGTGCTTCCCCAGAAACAGAACAGGCT GAATCATCTTCAAATACTGCCAATAAGGATGGAAGCATATCTAAAAGTCCAGTGCCCTCTTTGAAAGAAAGAGTCCCTGT TATTAAGCGGAATCACTCTATCAGTACTGTTAAGACAGCGACTGCAGCTCGAGCAAAAACAGCTGATGACTTGGATTCAG CATCTAATGCTGCAAACAAGTCACAAACTTATGTGCCTAGTACTGCTAAGATTGAACTACCTGTTGTTGAACCTCCATCT GACTTGAAAAGAGTTATTGAGAGGATAGTTGAGTTCGTCTTAAAAAATGGCAAACAAGTTGAGGCTGTTCTTGCTGAACA AGATCGTGCTCATGGAAGGTTCCCATTTCTTCTGCCATCTAATCGATATCATACTTACTATCTAAAAGCTCTTCAAAATG CTGACGAGGGTAAGTTACCAGGCAAGGACCACCAGAAACACAATTCATCAGGTCGTGCAGGGGACAATACTGCTGTACAT GAAGAAAGTGATGATCTCTCATGTGGATCTATGGGTTCTGATCTACCAAATGATATAGACAGAAAAGAGAAATTCAAGAT GATTATTGGCAAGTCAAAAAAGGATGGTCAAGATCCAACTCCCAAAGACTGCCATTCTCAAAACACAGTTGGCATGGATG CAGCATCAGCAGCTGCTATTCTTCAGGCTGCGACTAGGGGTATTAAAAACCCTAATTTAGATATTTTTACCAAGACATCA AGTAGTAGTGTTCATGGCCTTGGAGGTGATGGTGGGTATTTGTCCACTTTTCATCAAAATCTGGATGCTCCTATCCCTGT TACCAAGGCTATTGCAGAAACAGTAGCTATTGCCGCAGCTAGGGAAGCAGACTCCTCTGAAGCACATATGACTAAAGAGC AGAAACTTAAGGCAGAGAGATTGAAACGAGCAAAGATGTTTGCAGCCATGCTAAAAAGTGGAGTTGGAGCATTGAAAAAT GACCTGCCACGAGCTTTATCCGTTGAGCCACCTGGCTCTGGTCTTTCAGGTTCAGATGCTGAGACTGGGAATCCTGTGGT TAAAGAAAGGGAAGGAAGCTCCGTTCCATTTGATGTGGATAATTCAGATATAAGTAAGTCTGAGGAGAAGCATTCTATTG ATGATTCAGATAAAAGTCAGAAATCTGAGGAGAAACATGCTGTTGATGATATTGAAAGGCGATCAAAAAGAAAGTACCGT TCCAGATCTAGTAGACATGAAGAGGAGGAAGAAGAGGAGGAGGAGGAGGAAGAAGAAAAGAGAGAAGATGTAAGGGATCA TAAAAGATCCAGAAAAAAGCATCGATCTCATCGATCTTCACACACCAGTCGGGACAGGGATAGGGACGGACGCAAGCACA AGAGAAGACATTCCTCCTCGAAAGACAAGTATTCTTACAGGGGAGCTAAACATGGCATCTCTGATGATGAGCATCAACAC TCAAGTCATCATCATAAATACGATAGCTCCTCCGATGAAAAGCACCGATCTTCAAGACGACGACAAAGAGAAGACAGCAT GTCAGACCATGAGCATAAACATTCACGACGGCATAAACATGAGACCTCATCTGAGGATGAGCGTAGACACCGAAGCAGAC ATACAAAGCATAAGAGCAGATCTCATGTTGAAAGAGAATCAGAGTTGGAGGAGGGGGAGGTAATGAAATCAGATAAGTCT CAACAAGCAAGTGAGGTTGAACGTGCTAGCAGAGAGCCTTCTGCCAGTTTATCGAATGCAAACCATGGGCCAGAAATAAG TGATGTCTCTGATGAGCTTAGAGCCAAAATTCGAGCCATGTTGGCGGCTAACTTATAA
Protein sequence (LotjaGi1g1v0025900.8) extracted from Lotus japonicus Gifu v1.2 Proteins.
METKDSDTDAGFHPNFPVPENLLHNLPPSDKVHQIISRTATFVRKHGSQSEIILRVKQGDNPTFGFLMPDHHLHPYFRFL VDHQELLKANIDDGDSTVDKNKSKGLDQTGGALSLLGSVYGSGEDEDGTTENTCDFERDKCEGAAVDAAGTSASPETEQA ESSSNTANKDGSISKSPVPSLKERVPVIKRNHSISTVKTATAARAKTADDLDSASNAANKSQTYVPSTAKIELPVVEPPS DLKRVIERIVEFVLKNGKQVEAVLAEQDRAHGRFPFLLPSNRYHTYYLKALQNADEGKLPGKDHQKHNSSGRAGDNTAVH EESDDLSCGSMGSDLPNDIDRKEKFKMIIGKSKKDGQDPTPKDCHSQNTVGMDAASAAAILQAATRGIKNPNLDIFTKTS SSSVHGLGGDGGYLSTFHQNLDAPIPVTKAIAETVAIAAAREADSSEAHMTKEQKLKAERLKRAKMFAAMLKSGVGALKN DLPRALSVEPPGSGLSGSDAETGNPVVKEREGSSVPFDVDNSDISKSEEKHSIDDSDKSQKSEEKHAVDDIERRSKRKYR SRSSRHEEEEEEEEEEEEEKREDVRDHKRSRKKHRSHRSSHTSRDRDRDGRKHKRRHSSSKDKYSYRGAKHGISDDEHQH SSHHHKYDSSSDEKHRSSRRRQREDSMSDHEHKHSRRHKHETSSEDERRHRSRHTKHKSRSHVERESELEEGEVMKSDKS QQASEVERASREPSASLSNANHGPEISDVSDELRAKIRAMLAANL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 646 | 641 | 8.6E-188 | ||
| PANTHER | 6 | 646 | 641 | 8.6E-188 | – | |
| SUPERFAMILY | 17 | 82 | 66 | 7.59E-18 | ||
| Gene3D | 28 | 84 | 57 | 6.9E-20 | ||
| SMART | 33 | 86 | 54 | 2.4E-16 | ||
| Pfam | 34 | 82 | 49 | 1.7E-12 | ||
| ProSiteProfiles | 35 | 77 | 43 | 14.9 | ||
| MobiDBLite | 146 | 183 | 38 | - | – | |
| MobiDBLite | 152 | 175 | 24 | - | – | |
| SUPERFAMILY | 223 | 291 | 69 | 4.71E-14 | ||
| Gene3D | 238 | 295 | 58 | 7.3E-14 | ||
| SMART | 243 | 296 | 54 | 8.5E-10 | ||
| Pfam | 244 | 291 | 48 | 2.3E-9 | ||
| ProSiteProfiles | 245 | 287 | 43 | 14.441 | ||
| MobiDBLite | 296 | 310 | 15 | - | – | |
| MobiDBLite | 296 | 338 | 43 | - | – | |
| MobiDBLite | 488 | 748 | 261 | - | – | |
| MobiDBLite | 522 | 567 | 46 | - | – | |
| Coils | 556 | 590 | 35 | - | – | |
| MobiDBLite | 587 | 601 | 15 | - | – | |
| PANTHER | 602 | 764 | 163 | 8.6E-188 | ||
| PANTHER | 602 | 764 | 163 | 8.6E-188 | – | |
| MobiDBLite | 622 | 690 | 69 | - | – | |
| MobiDBLite | 701 | 726 | 26 | - | – | |
| MobiDBLite | 727 | 745 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi1g1v0025900.8, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…