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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0029000 |
| Transcript ID | LotjaGi1g1v0029000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT3G20395.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1; TrEMBL-Plants: tr|V7B9L4|V7B9L4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0029000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:3462822..3465734) extracted from Lotus japonicus Gifu genome v1.2.
TTCCTATCCTCCCAATCTGAAAAAGTCTATTACCTTCAATTCTCTCACAATGACCAAGTGGTTTTCTGGTAAAATAGCAG CAGTTAAAAGGTGTAAGGAAGCTCTTTCTGGCGGTTCTGTAGTTGGGGCATTCATGGTAGCTGTGGAGAGTGTTCTTTTT GCTGCATTTACCTGCATTTTGATCCTAGGTATGATGCACTTCTCTTATTCTATTTGTTAGTAGCAGATATCACTAAATCA CTACACAAGGTCTTTCAAAAACATTGGTATATAATGTTATACATCTAAAAATCTAGGCATGCAAGTTAGTGTTTGGATGA GTGTTATTAGAACTGATTCCTTATAGAATTGATTATGATAGAAATTAGTTGAAAGTGAAGTGGTTTTTATGTTTGGATAC AATTGATTTTGCAGCTTGCTGGAGTCAATTTTGAAAAGAAACATCCAAACACCAAAAAATTGATTCTGAACACTTGCAAA CGTGAAACCAAACATGCTCTAAGTTTAAGGCCTCTCAAAGACTCAAACACTACACTTAATGTCTCAAAGCAACTGAAATT AATGCAAGTTTGATTAAGCTATATATAGTTACAGAAGATGGCTCAGGTAAACAATGAAAGGAACAAACAGAAAAATAAAT TGAAGATAAAATAGTGCTTTCCATTAACACTTCATAGTGTGAAGTCACTTGAAATAGTGTTAAGAGCAATGTTGGATCTT GGTACAGGAGGGTCAATAATAGGAACAATTGCTGGAGCAATCAGAGGCCAGACTACAGAAACTGGTTTTCTTGATGGGGC TGGCAAAGGAGCCATCACAGGGGCAATTGCAGCCATAGAATTGACAAATTTTGGTGCTGTTGATGAGTCATTTTTCAAGG TATAAATAATACTACTATTCCCATAATTTGGCAATTTAATGGTTCATCCCTTTTCCTAAGGCCTTGATTAATTCTATTAC TAGTAACTAGTGGCTAGTAGCTAGAGTGATTGATTTTACACTTCTTACCTTGAAGTTTTGCTGTGTTGAATTGCAGGTTG CCCTGTTAAGCAGTTTATTTAATGGGAAAGTCTTTATGGAATTGATATGTCCTACTGTTGCACATGCCTATCAGTTGCAT GTAAGTATTTAAAAGCTAACTAAACGTCAAATTAGTGCATGTTTTGCAAGCACTTCTATTTTCTCATAATCAATTTTGAT TACCAAAACCTACTCACATAAGTTTTTTCTCAGAATTAATCTTAACTTTAGAGTTAATTGTATAAGGATTTCCAAACATG CATCATAACTGATTCAAAAGCCAAAATCAACTTCTATTTTCTCATAATCAATTTTTACACTATGGAACTACCCACCGAAG CTTCTTTGCGGCATTTATTTTAACTTCAAAATTAATTATAGAAGAGTTTTCAAACATGCGTTATATATGAATTCAAAATT CAAAATCAATTTTGCGAAAAAAACTAATGTGAGTAAATTTTAGATGTCAAAATTGATTATGAGAAAAAAAGGCTCATTCA AACATGCACCTATTAGTACTTGGAATCAAACTTGTAATCACATTTTGGTGAAACTCATTTGTTTCAGATCAACACACCAG AAACAGCTTACGGAGGAGTATCTGATATTTATGATATCAAGGGAGTGAAAGGGATGCCCCAGAACTTCATTCTGAAGCTT CCTTTCCACCGGTTCAACTCCAACAAAATAATGAAACTATGCAATAAATCTTGCTGCTCAATTTGCTTCCAGGTGAGAAA AATAATGTTTTGTTTACCCTTCTTTTTCACCTCAACCTCAAAGGAATAAGAAAATATCGAAAAAAAGGAAAAAGAGTACA AGAAATGCAGAGAGAAATATAAAAAAAAAATATTGAAAAAAGATATGATACAAGAAAAAGTGGAGTGTGAGTAAATCATT CCTCACGTCACAAACATCATCTCTGATGCGTGTGAAAATTTATTGGTTCAAGGAAAGCAAACAGAAGTTGGTTTGGGGAT ACCAATAAATCAACTACTTCAAAAAAACTTATGACGGGGCCACTAAAACTTTGGTTGCAAGAATTGTTTTACTAATATAA TATTTGATTAAAATACCTTTTCTTCAAAAAAAAAATAATAGTTTTAAGTATCTCGCGACCAAACATTATTATGTTTTTTG AATGGAAACATTATTATGTTGTAACATTGTAACAAGTAATTTCAACAAAAAAAATTAAAACAAGTGAAAAAAATATTCTC TATGGTTTGGGTACACACTCTTTTGTAATTTTGTTCATGGTGAAACGTGAATGTAATATGATTGTTTATTTTATGTCAAA ACTTGCTTTCTCTTATTTTAATAATGTATGAGTCGAGGAGGGTCCTTTTGATCTAGGTCTGATCTTGTTTGATGATCAAT TCCTCTCTTTATGCTTGGTTTGACCGTTAAAAAAGCTAGACATGGAAAACATACATACATTGTTATTTTTTTTCAATTAA TTATTATTTTTCTGGAAATCCAAATATATTAATAAAGAGAAAAAAAAACTAAGCTCAGGAATAGGATAATATATGGAGAT AATAAAAATAAAAATATCCAACCATCGAGAACCATAAGATAACTACAATAGTCGTATCACATAATTGTTTCATTTACATG TCCTTAGATAGTATGAAAATATTAATTCTTCACGCAATATCAATGAAGTCATCTTATACAACTAAACTAACTCCATGGTC TTACATTTTGATTTGCAGGATTTTGAGGATGAAGAGCTAGTCAGAATACTTCCTAAATGTGGCCACATTTTTCATTTAGA ATGTATAGATAAGTGGTTAGTCCAACAAGGATCATGTCCCATGTGTAGAACTTTTGTTTCTGATTACCATATTCATGAAT AATAGCGTTTTTGTCATTTATTTGTGAACACGT
CDS sequence (LotjaGi1g1v0029000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCAAGTGGTTTTCTGGTAAAATAGCAGCAGTTAAAAGGTGTAAGGAAGCTCTTTCTGGCGGTTCTGTAGTTGGGGC ATTCATGGTAGCTGTGGAGAGTGTTCTTTTTGCTGCATTTACCTGCATTTTGATCCTAGGAGGGTCAATAATAGGAACAA TTGCTGGAGCAATCAGAGGCCAGACTACAGAAACTGGTTTTCTTGATGGGGCTGGCAAAGGAGCCATCACAGGGGCAATT GCAGCCATAGAATTGACAAATTTTGGTGCTGTTGATGAGTCATTTTTCAAGGTTGCCCTGTTAAGCAGTTTATTTAATGG GAAAGTCTTTATGGAATTGATATGTCCTACTGTTGCACATGCCTATCAGTTGCATATCAACACACCAGAAACAGCTTACG GAGGAGTATCTGATATTTATGATATCAAGGGAGTGAAAGGGATGCCCCAGAACTTCATTCTGAAGCTTCCTTTCCACCGG TTCAACTCCAACAAAATAATGAAACTATGCAATAAATCTTGCTGCTCAATTTGCTTCCAGGATTTTGAGGATGAAGAGCT AGTCAGAATACTTCCTAAATGTGGCCACATTTTTCATTTAGAATGTATAGATAAGTGGTTAGTCCAACAAGGATCATGTC CCATGTGTAGAACTTTTGTTTCTGATTACCATATTCATGAATAA
Protein sequence (LotjaGi1g1v0029000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTKWFSGKIAAVKRCKEALSGGSVVGAFMVAVESVLFAAFTCILILGGSIIGTIAGAIRGQTTETGFLDGAGKGAITGAI AAIELTNFGAVDESFFKVALLSSLFNGKVFMELICPTVAHAYQLHINTPETAYGGVSDIYDIKGVKGMPQNFILKLPFHR FNSNKIMKLCNKSCCSICFQDFEDEELVRILPKCGHIFHLECIDKWLVQQGSCPMCRTFVSDYHIHE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 34 | 34 | - | – | |
| PANTHER | 18 | 220 | 203 | 7.0E-88 | – | |
| PANTHER | 18 | 220 | 203 | 7.0E-88 | – | |
| Phobius | 35 | 58 | 24 | - | – | |
| TMHMM | 36 | 58 | 23 | - | – | |
| Phobius | 59 | 227 | 169 | - | – | |
| Gene3D | 140 | 221 | 82 | 9.6E-20 | ||
| CDD | 174 | 217 | 44 | 1.99265E-19 | – | |
| SUPERFAMILY | 174 | 222 | 49 | 7.73E-21 | – | |
| Pfam | 174 | 217 | 44 | 4.1E-13 | ||
| SMART | 175 | 216 | 42 | 5.2E-9 | ||
| ProSiteProfiles | 175 | 217 | 43 | 13.404 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0029000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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