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LotjaGi1g1v0029400.2

Overview

Field Value
Gene ID LotjaGi1g1v0029400
Transcript ID LotjaGi1g1v0029400.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Ubiquitin thioesterase OTU1; TAIR: AT1G50670.1 OTU-like cysteine protease family protein; Swiss-Prot: sp|Q567B1|OTU1_DANRE Ubiquitin thioesterase OTU1; TrEMBL-Plants: tr|I3T4E6|I3T4E6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0029400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:3521994..3526990) extracted from Lotus japonicus Gifu genome v1.2.

GTGGATTGTCCAAAAACCAAAGTGGGTCTGATTTTGAGGAAAACGATTGTGGCAGCATCTCAAAACGGTAACCTCTTCAT TCATGGATGTCATCAATTTCGTGACTCATGTCATTTCCACTTCAAATCAAATATATACCAAATCTATGTCTCACGCCAAC CAATCCATCTCTTCATTGCTTTGCTTGCTTGCTTGGTATTCTTACATTCTTTATGCTCTTTGTTTTCATTCCAATCCCAT TAGATCTAATCTCTATCTATTTCATTCTATCCCTCTCTCTCTGTGTGAAGCTGGAGGAGCTGGATTCTGTTTCCATTTTG TTTTTCAATTTTTGAACTTGGAAATTATCCAGTAAGAATTGATTGTATTGAGGAATTCTAGGGTTTTTTCCTTTTCAGTT GTTAATTTTGTGTGCAGATTTACAACTTCTTTTCAAATGGGTCATGGGGTTACTGCATGTTGGGTGTAGAATTGAGAAAA AAATATGATTTTTATTTTTTATGGAAAATTTGTTACAAATTCTGTGTTTTAGAGGTTTGTGATTGATTTTCAGGCTAGTT GGTATTATCTTCAATCTGCATCATGGAAGGTGTTGTTGTGAGAAGAGTTATTCCTTCTGATAACAGTTGTCTCTTCAATG CAGTTGGGTAAGCATTAAGGCTTAAGCAATGAAGTAAAGCTTAAAGCTCCCTCCTTTTTCTCATTTGATATTGGTGATGC TCGTTATAGTCATTCCCCTTGTAATGTTGTTTCTCCATTTTGTTATGTTTACTCAATTCAGATATGTTATGGATCGTGAC CAAAACAAAGCTGCTGAGTTGAGACAGGTAGTCTACTCTAATCCTCTTGAATACTTGTTTGGAAATTCTTCTACATTTGA TTTTGGAACCAGAATCAATTTTGGGAAGAAGCTTGTGTGAGTAGCTAGTGGGTTTCAGAATTGATTCTTGGAAAAGTGAA GTTGATCCAAGCATGCTATGAATTGTGTTTTATTTGCTATGAATATTCATAGTAGTACTTACATTATGTGATTGTTTCGT TTCCATGCATATTGTGTCAATTTGGTTCTTACATAGAAAACCAGATAACAGGGTGCTCATCATGCCGCCACTTTGTTTCT GACTATTTGTTTTGTAAACCAAGTAATTGTGTATTTTGTATGTAGTGTATTGTGCTATGTATTAAATATTATGGACTTAT GTCCAACTTAATTGAATGTATTTTGGATTGATAGCACTTTTCTTTTTTCAATTTGAATTAGTTTTATGAGACAAACAAAA ATAACATATAGGAACTTTTATCTGTCATCTGTTGGACATAAATTCTTTCTAGGCATTTTATCATAATGAATTGCATTTGC ATTACATTTTTCTTTTGCTAAACCTCATACTTTGAACTTTGAAGCATTATTTAAGACTCTGCCTCATGTTTATAACCTTC TCTGGTTATGAACTCTTGATATACGACTTTAGCACCTTCTAAGGTAGATCACAATACTAAGTAATGAATCCATCACAATC TCTATACATTGTCCATCAAGCCTTATGCTATAATATTCGATGTTGTCCATAAAATTACTTGCAATTAGAAGAGTGTCATC ATGAAATCATGTACTTTTTTTATTCATATATGAAACTACATAGTCTATCATTTAAAAATTATCAGTGGCATGCAACTTTT CTATCCATGTATATGCATATATATTGCCTTCAATGTGGGACCTTAACTCAATCCTTCACACCCAGAGCTCAACAACTGGA GCGTGGAGGTTGTAGACTTGATATTTAATGGGAATGGTCTCATGCCAATCATAAAATATCCACGGGACCAGATTGACTTG ATATGAGTGGCCTATCATGGATGGCCTAGTAACAGAACACATATAGGATATGCTTTGATATCATCCATGAACTAACTATC TCAAAAGCTTAAGTTGTTGGGTGAAGACATGTGATTGTTGTTTCTAACAATCAATATAGTTATTCATATATTTTGACTTG GCATTTTGTTATGTTTGACATGCTAAAAGGTTATAGCTGCCACAGTAGCAAGTGATCCTGAGAAGTATAATGAAGCATTC CTTGGAAAGCCAAATGCAGAGTATTGTACCTGGATTCTGGATTCAGAGAAGTGGGGAGGTTAGTTGAGCTCTTCCAGATC ATGGCTGTTTTAATCATAAAAAACATTTAAGGGAAATAGTTATCATTTTTCACTTTGCAAGTTGGAACTGCTACCTTTTC TGTTCTCATGTGGCCAATGTATGAATGTACAACGTCAAGTGTGCATATCTCATTTTTTAGGCCCTTGTAAGGTGTTTAAA CTTGCTCAAATTTAGGTTGATTAAAAATAAGTACTCAAATTTGATGTCTTGGATTTTAATACAATTTTCTTACATAAATA TAATACCAAGTATATATAAGTTAAATAAGTTATTTTCCTGAAACTTTAGAGCTATTCTGGATACCCAAACAATCCTCTGC AAAAATTGAAAGTTCCTTAAACTTCAGTTGTTTTGTTCCTAGCAATAAATCACTTATAGTTTTCTGGGTCCAGATTTTGT GGTTGATGAGTTTAAAAGGAGTTTCAAAAGGTTCACAATCCCGTGGTCGTGGTAGCAAAATTAACAATAAAGCACTTTTG GTTTTTCATTAGTTTGATGTGCTAATGAGGCTACATTCCTCTGTGAAGGTGCAATTGAACTTTCAATATTAGTAGATTAT TATGGACGTGAAATTGCAGCATATGATATCCAGACCACAAGATGTGATTTGTATGGTCAGGTAAGCTCTTTTGAATATGA TACAACTCTATACGCTCTCAAGTTTTGTCAACCTCTTATAACTGAACTTCTTTCCACTTTTTTTCCTGAATACTTTTGAC AGGAAAGTAACTATTCTGAAAGGGTGATGCTTATTTATGATGGTCTCCACTACGATGCATTAGCTGTATGTAAATTTCAT ATACCAAAAATTACTAATACATTTGGATCTGGATCTGGATCCTATCATGTGAAAACGTCACATGACATTTTCAGGTTGAA ATGTTGTGTCTATCTCTCTCCATATGTATTAAATAGACCATCTGAATATTTATGAAGATAGAAATGAACCCAAGGTTTCA TATCGCAATGTCATGTGACATGAGAGGATCCTGATCCCATCCATTCATTCTCTTTCACATGTTTTTATTGTGGCTTGAAA AGTGAATTATCACTGTGCCTGAAACTAATGAGAAGTTAAGGTTCATAATTATTTTCCATCTTTTTATGGTACCTGATAAT TACACCTTTTATGCTTCAGATGTCTCCTGTTGAGGGAGCTCCTGAGGAGTTTGATCAGACCATATTTGCTGTAGAGAATA ACAGAAGCATTGGACCTGTTGAGGGGCTAGCTGTAAATTTTATTAAAGACCAACATAGGTAGTTTTCAATTCTTATAAAC CTTTTTCTTAAAAAGGAAGCTTGAAAATGTGGAAATTGATGAAGATTAGCACATTAGTAGAGTGAATTACAGAAACGTCC AGCTTTTATCTCTTTATTACAGTTTTATTGTGAAGTTCCATATATAAGGTTTCATTTTATTGTGGGTTGTATATTTAAGG TTTTAGATGCCTTAATTTAGAACCAAAGTGATGCACTGAACATGCTTTATCCAGTATGGAAAACAATTGGTGGAAGTCCG CGGACACCCAGAGTAAGAAAGAAAGAGAAGAGAGAGAAATAATGAATGTGATAATATATGATATGATGTGATGTGATGTT AGGATGTAAGAGAAGGGAAATTTAGTTAGGGACTTCAGAGGTTGTTAAAGTAGTTAATTAGTAGTTGGAGGGGATTAGCT ATATAAATAGAGGGAGATCAGATCGGGGGACCATTCTGTACAATTATTAGTTTGAAAGCTAAAGTAGAGATCCTTTGGGG AGAATTCATTCTCTAGTTTCTTGTTCAGTTCTTTTTAATAAAACACTGTCATTTCTTTCACTTTCTTTCTCTGGGTACCT AACATAAGAAGACAGATGAAAAGATGAGGTGTCTGATGGGTGTCTAGCTGTTTGAATGTCTAAGTATTCTTACTAATCCA GTATTTCTGCTTCCAGTAATCCCTGTAATCTGTGATATGCCCATGCTAACATCATGGCTGCACTTTCTCAGGAAACGAAG ATTCACTGACACTGCCAACTTCACATTGCGCTGTGGGGTGTGCCAAATTGGAGTAATTGGTCAGAAGGTCATTCCTAAGT ACCTGGTGTTTGTGCTTACCCACCGGATTAGGACTCTCTCATGTGATGACATTATCATGTCAAACTTTGAGTTTATCAGT CTTTATAAATATTCAGAGGGTCCCACCTAACTGGATCAAGAAAGAGATACACACTCAGTTTCAATTCTCTCCTGTGACAA AACCATGAGAGAGATATCTCAACCATCCAAAATATGTTAGATATTAAAAAATATTTTGGATGCCGGATATCTCTCCCCAG TGGTCATGTCACTAGAGAGGATCCATACTTGATAGACAATAAATTTCAACATGACACTATCATGTAAAACACGAGAGGAT CCTGATCCTTTATCTACCACCTTGTAATTTCTTTTAGTTATGATTCTGAGTACTGGTTTTTCTGTGAATATATTCAGGAG GCCGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAATACAGATGATACCCTGCTGAGACACCAATTTGTAC GTGTATACCCAGTTGATTTTTATGAGCTTCATTGATATAAGATAGTTGTCTCATTGAAGACAATCAAGTTCTTTCCCATG CTCAAAAAGTGATTAACTGAATAATTTTTAAGTTGAATTGTTGTAGCAAGTTGTGTTGTAACTTGTAAAATTGTAATAAT CATAGTTCCTGGGTCTCAATCCATAGTGATTGTACTTATAAAAGCCTCTTTGGTTGTGTTAAAATAATCTGAAAAATCAC TTTTCCCTTTGCAAAAACAACTTTCAGTAGCTGTTTT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0029400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGGTGTTGTTGTGAGAAGAGTTATTCCTTCTGATAACAGTTGTCTCTTCAATGCAGTTGGATATGTTATGGATCG TGACCAAAACAAAGCTGCTGAGTTGAGACAGGTTATAGCTGCCACAGTAGCAAGTGATCCTGAGAAGTATAATGAAGCAT TCCTTGGAAAGCCAAATGCAGAGTATTGTACCTGGATTCTGGATTCAGAGAAGTGGGGAGGTGCAATTGAACTTTCAATA TTAGTAGATTATTATGGACGTGAAATTGCAGCATATGATATCCAGACCACAAGATGTGATTTGTATGGTCAGGAAAGTAA CTATTCTGAAAGGGTGATGCTTATTTATGATGGTCTCCACTACGATGCATTAGCTATGTCTCCTGTTGAGGGAGCTCCTG AGGAGTTTGATCAGACCATATTTGCTGTAGAGAATAACAGAAGCATTGGACCTGTTGAGGGGCTAGCTGTAAATTTTATT AAAGACCAACATAGGAAACGAAGATTCACTGACACTGCCAACTTCACATTGCGCTGTGGGGTGTGCCAAATTGGAGTAAT TGGTCAGAAGGAGGCCGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAATACAGATGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0029400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEGVVVRRVIPSDNSCLFNAVGYVMDRDQNKAAELRQVIAATVASDPEKYNEAFLGKPNAEYCTWILDSEKWGGAIELSI LVDYYGREIAAYDIQTTRCDLYGQESNYSERVMLIYDGLHYDALAMSPVEGAPEEFDQTIFAVENNRSIGPVEGLAVNFI KDQHRKRRFTDTANFTLRCGVCQIGVIGQKEAVEHAQATGHVNFQEYR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.90.70.80
1 173 173 6.9E-64 –
PANTHER
PTHR13312:SF0
2 206 205 1.7E-106 –
PANTHER
PTHR13312
2 206 205 1.7E-106
IPR039138
ProSiteProfiles
PS50802
5 127 123 10.657
IPR003323
SUPERFAMILY
SSF54001
8 124 117 3.24E-15
IPR038765
Pfam
PF02338
12 102 91 1.1E-5
IPR003323

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004843
Molecular function Thiol-dependent ubiquitin-specific protease activity Catalysis of the thiol-dependent hydrolysis of a peptide bond formed by the C-terminal glycine of ubiquitin and another protein.
Subterm of
GO:0016579
Biological process Protein deubiquitination The removal of one or more ubiquitin groups from a protein.
Subterm of
GO:0030433
Biological process Ubiquitin-dependent ERAD pathway The series of steps necessary to target endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome. Begins with recognition of the ER-resident protein, includes retrotranslocation (dislocation) of the protein from the ER to the cytosol, protein ubiquitination necessary for correct substrate transfer, transport of the protein to the proteasome, and ends with degradation of the protein by the cytoplasmic proteasome.
Subterm of
GO:0101005
Molecular function Ubiquitinyl hydrolase activity Catalysis of the hydrolysis of ubiquitin from proteins and other molecules.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0029400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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