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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0032900 |
| Transcript ID | LotjaGi1g1v0032900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G72930.1 toll/interleukin-1 receptor-like protein; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8G5|G7K8G5_MEDTR NB-ARC domain protein; Found in the gene: LotjaGi1g1v0032900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:4203609..4207284) extracted from Lotus japonicus Gifu genome v1.2.
CTCGAGGAGTTTGAGTCCCTGTGGATGCAAACGCGTTGAATACGTGATAGGGAGAACTTTGTTGTATGTAATGCTCCTGC CCGGTTCAAACAAGATTACCTATGTGAAGGATAATTGTGGTTAAAAAAATCAACCCATTGAAATCCTAGGATCACATGCT GGTCTGAAAGCTCGAATCATTTTAGAGAATTTTTTTTTCAAACTAGTCTGTGTAATGTATGTGCATATTTGGGACTACAT CTTAAACAATTCTTTAAACAAATTATGACAAAAATTTAGGGTGAAGGAATTGAGGCCTAGTCCAAGGCAGAGAATGGAGA CATGTGGGAGCTCGAATCGGTCTGTCAGATGTCATGCTCCCATCTGCCAACCCTATGGGATACAAATCCTTAAAATTTGG AACTACATCCAAACACCTTAAGTAGACTTCTCTCCATGATAACCCCAAGGTCAACCTTTTACTCTGTTAGCTCCTAGAAA AATACGGGTGTGGACTTAATGATAGGGATGGTAAGCTTCTTTGAATGTGTGAGGTTTATAAAATAAATAAATAATGCAAA CCATGTTATCAACTTGGTATGGTAGGTTGGTTTAGTTATTATACATCATGCCATATATATTTCCTCAATAATTAAATGCT TCCCAGAAAACAATACCTTCATTATTGTTATTTATTATATTTGACTTTCTTTTTGGAACCAAAACTCCTATACTTACAAT CTTACATCTTCTCAGTTCCTAGCAACATTGAACTATTCTCTCTGTAAGAAGATTGGTCTAAGCACTGAGCAAATTAGCAA TCACACTGATTTTTAAACTTTCTGCAGGAAATAGCACCTGCAACATCTTGAGGTAAGTTTTGATTCTATTCATTCACTTT TATTTCCATAACTCTTTCGCATCAAATATAGTGTGTTTCTATACCAGTTGAGCGCAATGTGAATAGACTTTCATCCTAAT CTTTAAGAAGAGTTATATTCACTTTTTATCTTTGATCTTTTGGACCTTCCATTCAATGCCATGATCATTTTAGTTATGCA TTTTCTCTAATTTGTTGAGTTTCTGGTCAAGATCTAGATCAAACATTAAAACTGAAGACATGATTGCATCTGATTTCTTT GTAAATTCATTTTATATTTATGACTTCATTTTGATTTGCTTCACTAAAAATTCAACATTAAGATGTATCTAGCTTGAGAT TTAAACTGATTATTTCACAGGTTACTTTTGTTTTAATGGAAGACCACCATATCTTAAGAAGAAACCTTCAGGAGGAGATA CTAACATACAAATACATAAATGGATATCCAATGTTCCAAATCATGGAATATTTCAAGAGTGAAAAGGAGAAGCTGATTTC AAATCTTGATCACGTGCAGAAAAAGGTTGAAGCAACGAGAAAAACAACAAAACTCAATGATGCTATTTCAGAGTGGCTAA ATGATGCAGTGAAACTCACAGAGGAGGTGGAGAATCAAGAAATTGAAATAGAATCAGAGATGGGAACTCCAACCCCAGAT GAGTATTCTTTCACTCATATAATTGGGACCATCTATGAGCTACACTGTGACATAATAAAGAAAATGAAGAAGTTGAATGC CAAATGTGAATTTGAATCATTTTCAAGCCCAATTCCAGGTTTAGTGTACTTCTCTTCTGGAAACTTCATGTGTTTCAAGT CTACAGAAAAAGCTTCAAATGAAATTTTGGAAGCACTTCAAGATGATAGTAACTTGATAGTTGGATTGTATGGAAGGAAA GGCTCAGGGAAAACAACACTAGTGAAAACATTGGCTGAGAAAGCCAAGTATTTGAAGATTTTCAATGTTGTTATATTTGT CATTGTACCTCCAAATCCAAACATCAAGAGGATTCAGGACCAAATTGCTGACTCATTGAATCTGAAGTTAGACAAAGGTA CTGAATTTGAAAGAGCAAGACAAATTTACCTAACATTATCAAATATGGATAGAATGCTTGTGATACTGGATGATGTTAGA ACAAAGCTTGAGCTAGAGGATATAGGTATTCCTTGTGATAACAGTGAAGGGAACAAGATCCTTTTGACCACTCGTCGCAA AACTCAGTGTAACTTAATAGGGTGTCAAAGGAAGATTCATTTAGGTTCAATATCGAAAAGAGAAGCTTGGAAGTTGTTCA AGAAACATTCAAGTATAGATAATGAGACTCCATCTAATATATCAAAAGTGGGACATGAAGTTGCTGTTGAATGTCAAGGA TTACCTGGTAGAATCAAAGATGTGGGAACTTCCTTAAAAAGTGAACCGATTGAGCATTGGAATGAGTTACTAAACAGTTT GAGGCATTCAATGGCGCGCTACCAGATTTATATCAGCTTTAGAGGAGAGGATACCGGCTGCTCTTTTGCCGGCTATCTCT ACCGGGCGTTGTGCCGGGAGGGATTCAAGACCTTTATGGATGACGGGAGACTGGAAGGTGGAGACGAAATTTCACCTTCT CTTGTTAAAATGATTGAAGCCTCGAGGCTCTCGATTGTTGTTTTCTCTCAAAACTATGCGAAATCATGCTTGTGTCTTGA TGAACTTGCTACAATTCTCAAGTTTAAGGAGACAAAGAACCAGGTGGTTTGGCCAATTTTTTACAAAGTGGAACCGACTG ATATAAGACATCAGAAAAATAATTATGAAAAAGCATTGGCTGAGCATGATGAAAAATTTGCGAATGATCCTGAGAAAGTG CAAAGATGGAGGTCAACTTTGTCTAAAATTGTTGACATGTCTGGATTTTCCTATACTGCCGGGTATGTAGTATACTTTTA GCTAAGTTTTATAGTTAATGTCTACAATGCTAGTACTAGCTGTCAATAATATGTTGATTATTTACTTCATTTTTTAGGTA TACCAAATGGTTGATGGGAAAAATGTCTTCTAATTAAATGTGACCATGTTGATAGGAATGTGTTTAGTTTAGGTGTAGTA TATTTTGAGTGATAATCTGTTTTTGTGTAAGATTGATTACTAGAACTAGAAGTTTTTATTTTTTTCTTTATTTTGAGTGA TAATATGTTTTTGTCTTCTAATCATTGTGTGCATAAGTGAATGAAAAGTTCTTATATTTTTGCAGGTATGAATATAAATT TATCCAAGACATGGTGGAAAGGGCCAATAATATCAAAAAATATGACTTGTATTTACAAAGCTGGGATATGGACTAGAAGG AAGACTTGGGCACATAACACGAGTCATTGCTGGCTATGGAATGGAGTGTGGCTGTAATGTGCATGTTCATTTGTGGAAGT TGCTCGGGACTCATTCTATATTCATGAATAAACTCAAAAATTTAGGTTTTGACAAAAATAAAAAGACCAAAAATTTTTAG GTGATTTTGTTTTGGGAAGAATCTTTTGCTTACCATTATCTTTGTATCATAAGTTTTTACAAAGCTATATCTATTCAATA TCTATAAAGAGAAATATGAAATTTTAACATAAAATGGCTACAATTGTATTAGTTTGTTACAAATCAGAGTAGTGATGCAG TGATGATGGTAGTGGCGAAGGTGGATGTGACGGCGGTAGTGACGATTGTGGCGGTGATGATGGTGGTGATGGTGGCAGCG GAGGTAGAGGCGACAATGGTGGTGTTGGTGGTGGTGGTGGCGACGGTGACGGCGGTGGTGAAGGCGGTGATGGTTG
CDS sequence (LotjaGi1g1v0032900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGACCACCATATCTTAAGAAGAAACCTTCAGGAGGAGATACTAACATACAAATACATAAATGGATATCCAATGTT CCAAATCATGGAATATTTCAAGAGTGAAAAGGAGAAGCTGATTTCAAATCTTGATCACGTGCAGAAAAAGGTTGAAGCAA CGAGAAAAACAACAAAACTCAATGATGCTATTTCAGAGTGGCTAAATGATGCAGTGAAACTCACAGAGGAGGTGGAGAAT CAAGAAATTGAAATAGAATCAGAGATGGGAACTCCAACCCCAGATGAGTATTCTTTCACTCATATAATTGGGACCATCTA TGAGCTACACTGTGACATAATAAAGAAAATGAAGAAGTTGAATGCCAAATGTGAATTTGAATCATTTTCAAGCCCAATTC CAGGTTTAGTGTACTTCTCTTCTGGAAACTTCATGTGTTTCAAGTCTACAGAAAAAGCTTCAAATGAAATTTTGGAAGCA CTTCAAGATGATAGTAACTTGATAGTTGGATTGTATGGAAGGAAAGGCTCAGGGAAAACAACACTAGTGAAAACATTGGC TGAGAAAGCCAAGTATTTGAAGATTTTCAATGTTGTTATATTTGTCATTGTACCTCCAAATCCAAACATCAAGAGGATTC AGGACCAAATTGCTGACTCATTGAATCTGAAGTTAGACAAAGGTACTGAATTTGAAAGAGCAAGACAAATTTACCTAACA TTATCAAATATGGATAGAATGCTTGTGATACTGGATGATGTTAGAACAAAGCTTGAGCTAGAGGATATAGGTATTCCTTG TGATAACAGTGAAGGGAACAAGATCCTTTTGACCACTCGTCGCAAAACTCAGTGTAACTTAATAGGGTGTCAAAGGAAGA TTCATTTAGGTTCAATATCGAAAAGAGAAGCTTGGAAGTTGTTCAAGAAACATTCAAGTATAGATAATGAGACTCCATCT AATATATCAAAAGTGGGACATGAAGTTGCTGTTGAATGTCAAGGATTACCTGGTAGAATCAAAGATGTGGGAACTTCCTT AAAAAGTGAACCGATTGAGCATTGGAATGAGTTACTAAACAGTTTGAGGCATTCAATGGCGCGCTACCAGATTTATATCA GCTTTAGAGGAGAGGATACCGGCTGCTCTTTTGCCGGCTATCTCTACCGGGCGTTGTGCCGGGAGGGATTCAAGACCTTT ATGGATGACGGGAGACTGGAAGGTGGAGACGAAATTTCACCTTCTCTTGTTAAAATGATTGAAGCCTCGAGGCTCTCGAT TGTTGTTTTCTCTCAAAACTATGCGAAATCATGCTTGTGTCTTGATGAACTTGCTACAATTCTCAAGTTTAAGGAGACAA AGAACCAGGTGGTTTGGCCAATTTTTTACAAAGTGGAACCGACTGATATAAGACATCAGAAAAATAATTATGAAAAAGCA TTGGCTGAGCATGATGAAAAATTTGCGAATGATCCTGAGAAAGTGCAAAGATGGAGGTCAACTTTGTCTAAAATTGTTGA CATGTCTGGATTTTCCTATACTGCCGGGTATGAATATAAATTTATCCAAGACATGGTGGAAAGGGCCAATAATATCAAAA AATATGACTTGTATTTACAAAGCTGGGATATGGACTAG
Protein sequence (LotjaGi1g1v0032900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDHHILRRNLQEEILTYKYINGYPMFQIMEYFKSEKEKLISNLDHVQKKVEATRKTTKLNDAISEWLNDAVKLTEEVEN QEIEIESEMGTPTPDEYSFTHIIGTIYELHCDIIKKMKKLNAKCEFESFSSPIPGLVYFSSGNFMCFKSTEKASNEILEA LQDDSNLIVGLYGRKGSGKTTLVKTLAEKAKYLKIFNVVIFVIVPPNPNIKRIQDQIADSLNLKLDKGTEFERARQIYLT LSNMDRMLVILDDVRTKLELEDIGIPCDNSEGNKILLTTRRKTQCNLIGCQRKIHLGSISKREAWKLFKKHSSIDNETPS NISKVGHEVAVECQGLPGRIKDVGTSLKSEPIEHWNELLNSLRHSMARYQIYISFRGEDTGCSFAGYLYRALCREGFKTF MDDGRLEGGDEISPSLVKMIEASRLSIVVFSQNYAKSCLCLDELATILKFKETKNQVVWPIFYKVEPTDIRHQKNNYEKA LAEHDEKFANDPEKVQRWRSTLSKIVDMSGFSYTAGYEYKFIQDMVERANNIKKYDLYLQSWDMD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | 37 | 57 | 21 | - | – | |
| Coils | 64 | 91 | 28 | - | – | |
| SUPERFAMILY | 142 | 366 | 225 | 1.29E-36 | ||
| Gene3D | 145 | 295 | 151 | 6.6E-20 | – | |
| Pfam | 152 | 368 | 217 | 5.6E-37 | ||
| PANTHER | 162 | 362 | 201 | 1.7E-68 | – | |
| PANTHER | 162 | 362 | 201 | 1.7E-68 | – | |
| SMART | 165 | 378 | 214 | 0.0032 | ||
| PRINTS | 168 | 183 | 16 | 1.7E-9 | – | |
| PRINTS | 241 | 255 | 15 | 1.7E-9 | – | |
| PRINTS | 333 | 347 | 15 | 1.7E-9 | – | |
| Gene3D | 363 | 536 | 174 | 2.7E-55 | ||
| SUPERFAMILY | 366 | 511 | 146 | 6.8E-34 | ||
| ProSiteProfiles | 367 | 508 | 142 | 24.413 | ||
| PANTHER | 368 | 530 | 163 | 1.7E-68 | – | |
| SMART | 368 | 508 | 141 | 1.0E-30 | ||
| PANTHER | 368 | 530 | 163 | 1.7E-68 | – | |
| Pfam | 369 | 528 | 160 | 1.2E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi1g1v0032900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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