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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0033000 |
| Transcript ID | LotjaGi1g1v0033000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G72930.1 toll/interleukin-1 receptor-like protein; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8F2|G7K8F2_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi1g1v0033000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:4207492..4210218) extracted from Lotus japonicus Gifu genome v1.2.
GTTCAGTTATATAAAATAATATCTTCAGCTTTCAATGTATTTATTTCCTCCATCTTTTATATTTTGCTGAGATGTGTTTT TAAGTTCAGCATCTTGTTTTCCAAAGTTAAGGATGCTTCCTGTCAATTATTGAAGGTATGGGAAGCTCCTAGAAAATAGT ACCTTCATTACTATTACTCATTATATATTTTTAGAATATTTTTTGAACCAGATAACCTCTTCGATCTAAGCAGTTCCTAG AAATATATTATATTGTCTGAAACTCTGCATATGGATTATGAAGTTTGGTTTGATCTTTGACTTGCTAACTGCATGTCATT CCATTTCCAGGAAAGAGTAGAGGGACCTCCATCTTTTAAGCCTGCAGCATCTTCGAGTGAGTCAAAATTTCATTCCTTAC AGGTCTTTAATTTCATATCTTTTTCACATCAAACATTTCTTCTTTTTTTGGTTAGAGATCTTCCTTTGTTTCTATGATTC TAATCTAATGACCTCAGCATGCTTTCTTTCCTTTTCTACTGATACAGAGGAAATAGATCAGTTTACTGAAGCTATATAGA TGAAACATAATTAATATGATCATTTTAAGTGTCATGCATTTTCTCTGCTTTGTTCCATTTCTGGTTAACATTCTAGATCA AACATGTTAACTCAAGGCATGATTGCATTGGATTTCCATGGAAATTCACTTTTTTCATCTTGTCTCACTTCATTTTGATT TGTAGAATTGTAGCATGAGTAACAAATAACAATATAATATAGAGATGTGTTTAGATAAGTGCTGAATTGATTATATTCCT GTTTGCCTTTGCTTAAATGATTACAGGCACTAGCTAGCTAGAGAAAGGTTGTAACATCAATTTCAGATGGAGAAACCAGA AGGTGAAATTCCATTGCAAGCCACATTTGATCTTGAAAAGAGGTGGCTGATTGCTACACGAAACAACGTCCGGAAAAGAG CTGAAGCAGCCTATAAAACAGAAAAGGCCAATGATGCTGTTTGGGAGTGGCTAAATGATGCAGAGAAACTCATACAAGAG ATCAATATTGCAACAAGGGATACTAGTAAGCAGCACGGTGAAATGATAAACAAGATAAAGATGTTGAAGGATGAGTGTAA ACTTGAGAGATTCTTCAGCCCTATTCCAGATTTAGGGTACTTCTCTTCTGAAAGTCTAGTGTGTTTCAAGTCTACAGAAA AGGCTTCACATGAACTTTTGGAGGCACTAAAATCTGATAGCATCTATGTTATTGCATTGTATGGGGATAAAGGCTCTGGT AAAACAGAACTAGTGAAAGCAGTGGGTGAGAAAGCCAAGTATCTAAAGTTTTTTGATGCAATCATATTTGCCACTGTGTC ACAAAATCCACTTAGGAAGATTCAAGAACAAATTGCACAATCCTTGAATGTGAAATTTGACAAACACAGTGAACTTGGAA GAGCAAGAAAAATATACTCCACATTATCAGAAAGTAAGGATCAAATTCTTGTGATCTTGGATGATGTTAAGGAAAAGCTG GACCCTGAGGACATAGGCATTCCATGTCAAAGTAACCAGTGCAAGGTCCTTTTAACCACGCGTCACAAACAAGAGTGTGC TTCGAATTGTCAAAGGGTGATTCCTCTACGTCCCTTGTTGGAAGAAGAAGCTTGGGGGTTGCTCGCCGGACATTCAGGCA TAGATGATGACTCCCCATACAAGTTAACCCTTGCGGCATCTGAAATTGTTGGAGCTTGTAAAATGTTTCCTGGTTTAATT AAAGATATAGGACCTTCCCTAAAAAATAAACCCATTGAGGAGTGGGATGCAACAGTATCTAGTCTGAGAAATTCAAAGGC GCGCTACCAGATTTTCATCAGCTTTAGAGGAGAAGATACGCGCGAGTCTTTTACCGGTTTTCTATATGAGGCTCTATGCC GGGAAGGATTCAAGACCTTCTTAGATGATGGAGGATTGAAGGGCGGGGACCAGATTTCTGAAACACTTGTTGAAGCAATT GAAGATTCGAGGCTTTCGATCGTTGTTTTCTCCGAAAATTATGCAGAATCTCGTTGGTGCCTAGAGGAACTTGTTACTAT AGTTGAATGTAAGAAATATAAGAAGCAACTTGTTTGGCCAATCTTTTACAAAGTGTCTCGGTCAGATGTGAGGCTTCAGA AGAATAGTTATGGAAAAGCCATGGCTAAACATGAAGAAAGATTTCAAAAGGACCCTGAGAAGGTGCAAAAATGGAGATCA GTGTTATCTGAAGTTGCCAAATTAAAGACTGGAATGCAATACAGCACCGGGTACATAGTATCTTTTTTATATACTTTTAT TCAAGCTTAATTTTGATATGTTTTTTTGTGAAATATATTCTGAATAATGGAAAGTAAATTATTATTGTGTATATATAAAC TAATTAAAAGGCCATTTATTTTTGCAGATATGAATACAAGTTTATTGAAAGGATTGTGGAAGCTGCCAATAATGTTAGAA ATCGCTTGTATATACGAAGTATGGGCATGGACTAGAAGAAAGACATCAATTTCTGAGTTGTGGTTTTATCAGATGCTGCT GTCTTGGAAATGAATCATTGTTGTAATGTGCATGTTAAAGTACTAGTTTTGTATGTGTGTCATGTTCATAAATTGACTTT CTTATATCAAAACTTCACATGATATCTTTGGGTGAAATTGTTGTATAGTGTTATAAATTTTGATAACACTCCACTGACCA CTCATGT
CDS sequence (LotjaGi1g1v0033000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAAACCAGAAGGTGAAATTCCATTGCAAGCCACATTTGATCTTGAAAAGAGGTGGCTGATTGCTACACGAAACAA CGTCCGGAAAAGAGCTGAAGCAGCCTATAAAACAGAAAAGGCCAATGATGCTGTTTGGGAGTGGCTAAATGATGCAGAGA AACTCATACAAGAGATCAATATTGCAACAAGGGATACTAGTAAGCAGCACGGTGAAATGATAAACAAGATAAAGATGTTG AAGGATGAGTGTAAACTTGAGAGATTCTTCAGCCCTATTCCAGATTTAGGGTACTTCTCTTCTGAAAGTCTAGTGTGTTT CAAGTCTACAGAAAAGGCTTCACATGAACTTTTGGAGGCACTAAAATCTGATAGCATCTATGTTATTGCATTGTATGGGG ATAAAGGCTCTGGTAAAACAGAACTAGTGAAAGCAGTGGGTGAGAAAGCCAAGTATCTAAAGTTTTTTGATGCAATCATA TTTGCCACTGTGTCACAAAATCCACTTAGGAAGATTCAAGAACAAATTGCACAATCCTTGAATGTGAAATTTGACAAACA CAGTGAACTTGGAAGAGCAAGAAAAATATACTCCACATTATCAGAAAGTAAGGATCAAATTCTTGTGATCTTGGATGATG TTAAGGAAAAGCTGGACCCTGAGGACATAGGCATTCCATGTCAAAGTAACCAGTGCAAGGTCCTTTTAACCACGCGTCAC AAACAAGAGTGTGCTTCGAATTGTCAAAGGGTGATTCCTCTACGTCCCTTGTTGGAAGAAGAAGCTTGGGGGTTGCTCGC CGGACATTCAGGCATAGATGATGACTCCCCATACAAGTTAACCCTTGCGGCATCTGAAATTGTTGGAGCTTGTAAAATGT TTCCTGGTTTAATTAAAGATATAGGACCTTCCCTAAAAAATAAACCCATTGAGGAGTGGGATGCAACAGTATCTAGTCTG AGAAATTCAAAGGCGCGCTACCAGATTTTCATCAGCTTTAGAGGAGAAGATACGCGCGAGTCTTTTACCGGTTTTCTATA TGAGGCTCTATGCCGGGAAGGATTCAAGACCTTCTTAGATGATGGAGGATTGAAGGGCGGGGACCAGATTTCTGAAACAC TTGTTGAAGCAATTGAAGATTCGAGGCTTTCGATCGTTGTTTTCTCCGAAAATTATGCAGAATCTCGTTGGTGCCTAGAG GAACTTGTTACTATAGTTGAATGTAAGAAATATAAGAAGCAACTTGTTTGGCCAATCTTTTACAAAGTGTCTCGGTCAGA TGTGAGGCTTCAGAAGAATAGTTATGGAAAAGCCATGGCTAAACATGAAGAAAGATTTCAAAAGGACCCTGAGAAGGTGC AAAAATGGAGATCAGTGTTATCTGAAGTTGCCAAATTAAAGACTGGAATGCAATACAGCACCGGATATGAATACAAGTTT ATTGAAAGGATTGTGGAAGCTGCCAATAATGTTAGAAATCGCTTGTATATACGAAGTATGGGCATGGACTAG
Protein sequence (LotjaGi1g1v0033000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKPEGEIPLQATFDLEKRWLIATRNNVRKRAEAAYKTEKANDAVWEWLNDAEKLIQEINIATRDTSKQHGEMINKIKML KDECKLERFFSPIPDLGYFSSESLVCFKSTEKASHELLEALKSDSIYVIALYGDKGSGKTELVKAVGEKAKYLKFFDAII FATVSQNPLRKIQEQIAQSLNVKFDKHSELGRARKIYSTLSESKDQILVILDDVKEKLDPEDIGIPCQSNQCKVLLTTRH KQECASNCQRVIPLRPLLEEEAWGLLAGHSGIDDDSPYKLTLAASEIVGACKMFPGLIKDIGPSLKNKPIEEWDATVSSL RNSKARYQIFISFRGEDTRESFTGFLYEALCREGFKTFLDDGGLKGGDQISETLVEAIEDSRLSIVVFSENYAESRWCLE ELVTIVECKKYKKQLVWPIFYKVSRSDVRLQKNSYGKAMAKHEERFQKDPEKVQKWRSVLSEVAKLKTGMQYSTGYEYKF IERIVEAANNVRNRLYIRSMGMD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 100 | 252 | 153 | 1.4E-21 | – | |
| SUPERFAMILY | 106 | 321 | 216 | 2.7E-29 | ||
| CDD | 111 | 162 | 52 | 0.00103499 | – | |
| Pfam | 115 | 326 | 212 | 3.8E-27 | ||
| PRINTS | 128 | 143 | 16 | 9.0E-5 | – | |
| PRINTS | 201 | 215 | 15 | 9.0E-5 | – | |
| PRINTS | 291 | 305 | 15 | 9.0E-5 | – | |
| SUPERFAMILY | 317 | 466 | 150 | 8.24E-41 | ||
| Gene3D | 320 | 495 | 176 | 1.1E-62 | ||
| PANTHER | 321 | 488 | 168 | 2.2E-73 | – | |
| PANTHER | 321 | 488 | 168 | 2.2E-73 | – | |
| ProSiteProfiles | 325 | 466 | 142 | 29.283 | ||
| SMART | 326 | 466 | 141 | 4.8E-41 | ||
| Pfam | 327 | 487 | 161 | 9.4E-43 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi1g1v0033000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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