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IPR016143

Description

IPR016143 is a Citrate synthase-like, small alpha subdomain.

<p>This entry represents the small α-helical domain from type I and II citrate synthase enzymes, as well as a homolgous domain found in the related enzyme ATP citrate synthase. ATP citrate synthase ([ec:2.3.3.8]) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide [[cite:PUB00042606]]. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial-produced citrate [[cite:PUB00042607]].</p> <p>Citrate synthase [ec:2.3.3.1] is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA).</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 20

Transcript Name Description Predicted domains Domain count
Citrate synthase [Medicago truncatula] gi|357494363|ref|XP_003617470.1| 18
PREDICTED: ATP-citrate synthase beta chain protein 1-like [Glycine max] gi|356556001|ref|XP_003546316.1| 23
ATP citrate lyase alpha subunit [Glycyrrhiza uralensis] gi|148872938|gb|ABR15094.1| 25
Citrate synthase [Medicago truncatula] gi|357459271|ref|XP_003599916.1| 13
PREDICTED: ATP-citrate synthase beta chain protein 1-like [Glycine max] gi|356556001|ref|XP_003546316.1| 23
Citrate synthase; TAIR: AT2G42790.1 citrate synthase 3; Swiss-Prot: sp|P49299|CYSZ_CUCMA Citrate synthase, glyoxysomal; TrEMBL-Plants: tr|G7K3F1|G7K3F1_MEDTR Citrate synthase; Found in the gene: LotjaGi1g1v0038100 19
Citrate synthase; TAIR: AT2G44350.1 Citrate synthase family protein; Swiss-Prot: sp|P49298|CISY_CITMA Citrate synthase, mitochondrial; TrEMBL-Plants: tr|A0A0L9UJS8|A0A0L9UJS8_PHAAN Citrate synthase; Found in the gene: LotjaGi3g1v0127400 16
Citrate synthase; TAIR: AT2G44350.1 Citrate synthase family protein; Swiss-Prot: sp|P49298|CISY_CITMA Citrate synthase, mitochondrial; TrEMBL-Plants: tr|A0A072V8L1|A0A072V8L1_MEDTR Citrate synthase; Found in the gene: LotjaGi3g1v0127400 20
ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|A6MZ92|A6MZ92_GLYUR ATP citrate lyase alpha subunit; Found in the gene: LotjaGi4g1v0331500 24
ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|A6MZ92|A6MZ92_GLYUR ATP citrate lyase alpha subunit; Found in the gene: LotjaGi4g1v0331500 24
ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|A6MZ92|A6MZ92_GLYUR ATP citrate lyase alpha subunit; Found in the gene: LotjaGi4g1v0331500 20
ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|A6MZ92|A6MZ92_GLYUR ATP citrate lyase alpha subunit; Found in the gene: LotjaGi4g1v0331500 24
Citrate synthase; TAIR: AT2G42790.1 citrate synthase 3; Swiss-Prot: sp|P49299|CYSZ_CUCMA Citrate synthase, glyoxysomal; TrEMBL-Plants: tr|G7IZY5|G7IZY5_MEDTR Citrate synthase; Found in the gene: LotjaGi6g1v0170700 14
Citrate synthase; TAIR: AT2G42790.1 citrate synthase 3; Swiss-Prot: sp|P49299|CYSZ_CUCMA Citrate synthase, glyoxysomal; TrEMBL-Plants: tr|G7IZY5|G7IZY5_MEDTR Citrate synthase; Found in the gene: LotjaGi6g1v0170700 19
Citrate synthase; TAIR: AT2G42790.1 citrate synthase 3; Swiss-Prot: sp|P49299|CYSZ_CUCMA Citrate synthase, glyoxysomal; TrEMBL-Plants: tr|A0A151RYN3|A0A151RYN3_CAJCA Citrate synthase; Found in the gene: LotjaGi6g1v0170700 15
ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|V7BMZ5|V7BMZ5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0258800 24
ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|V7BMZ5|V7BMZ5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0258800 24
ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|V7BMZ5|V7BMZ5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0258800 24
ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|V7BMZ5|V7BMZ5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0258800 22
ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|V7BMZ5|V7BMZ5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0258800 24

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd06100 CDD 1 5.00