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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0041700 |
| Transcript ID | LotjaGi1g1v0041700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT2G42920.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920, chloroplastic; TrEMBL-Plants: tr|V7BBJ9|V7BBJ9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0041700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:5708941..5713284) extracted from Lotus japonicus Gifu genome v1.2.
CCAAAGAGCACCACAAACAATGTCAACACTTCCTCCATCATTACCACCCTCCATATCCAAGTTCATCTCTGACCAACCAT GCCTCACCATGCTCCAAAACCACTGCACCACCATGAAAGACTTCCAACAGATTCATGCCCACATCATCAAAACTGGCCTT GCACATGACCACATTGCTGCTAGCCGTGTCCTCACATTCTGTGCCTCTTCATCTGGTGACATCAACTATGCTTACATGGT GTTCACCCGAATGCCAAGCCCAAATCTGTATTCTTGGAACACAATCATCAGAGGCTTCTCTAGAAGCTCAACCCCACAAT TTGCTATATCACTCTTTGTTGACATGTTGTGTTCTGAAGTTCAACCTCAAAAGTTGACTTACCCTTCAGTTTTCAAAGCT TATGCTCAACTTGGTGCTGGCCATGATGGGGCTCAGCTTCATGGGAGGGTTGTAAAATTGGGCCTTGAGAAGGACCAGTT TATTAGTAACACTATCATACACATGTATGCTAATAGTGGGTTATTAAGTGAAGCTAAAAGAGTGTTTGATGAAAAGGTGG AACTTGATGTGATAGCTTGCAATTCAATGATTATGGGTCTTGCTAAGTGTGGGAAAATTGATGAGTCTAGGAGGTTGTTT AATAACATGGCTGCAAGAACTGCAGTTACTTGGAATTCTATGATTAGTGGTTATGTTAGGAATGGGAGGCTAAAGGAGGC ATTGGAGGTTTTCAGCAATATGCAAGAAGAAGGGGTTGAGCCAAGTGAATTTACAATGGTGAGCTTGTTAAATGCTTGTG CTCACTTAGGATCACTTCAACATGGGGAATGGGTTCATAGTTATATAAGAAGGAATAATTTTGAGTTGAATGTCATTGTC CTCACAGCAATAATTGACATGTACTGCAAGTGTGGATCTATTGAGAATGCCATTGAAGTGTTTGAGAGGAACCCCAGAAG AGGATTATCATGTTGGAACTCCATTATAATAGGGCTAGCCATGAATGGTCATGAAAGAGAAGCAGTTGAGTTCTTCTCTA AGCTTCAATCTTCAAATTTGAAGCCAGACAGAGTAAGTTTCATTGGTGTTTTAACTGCTTGTAAACACTTGGGAGCAATA GATGAAGCTAAATACTATTTTTCACTGATGGTGAATGCGTATGAGATTGAGCCATCAATAAAACACTACACTTGCATGGT TGAAGTGCTAGGTCAAGCTGCACTCCTAGAAGAAGCAGAAGAGCTAATAAAGGGTATGACTATAAAGCCAGATGCTATTA TATGGGGATCTTTGCTCTCATCATGTAGGAAGCATGGGAATGTAGAGATTGCGAAGCGGGCCGCACAAAAAGTTTGTCAG TTAGATCCAGGCGATGCCGGTGGCTATGTACTTATGTCTAATGTTCAGGCTGCATCAAACAAATTTGAAGAGGCAATGGA GCAAAGGATTTTGATGAAGGAAAATTTTACAGAGAAAGAACCAGGATGCAGTTCAATTGAATTATATGGAGAGGTTCATG AGTTTCTAGCTGGGGGGAGGCTACATCCTAAAACTCAAGAGATCTACTCTTTACTGAATGACCCCGGTTTTGCATTTCAA GATTGAATACATCTTTGGAATCATGATGAACTCATGAATTTTTAGCGTCAATCTGTATATATAAGAAATAGCTTTTATAT AGTGAAGATTTACAATATTTGAGAATTACACAATACAGTTAAATAACAGAATTTAGAGTTACTAGGATTCATAGACTTAC AAAGAAAAAGAAAGTGCCTGAAGTAGAAGGACATTGTGAAATGGGAAAGACGGGACCATGAAATGATATTTGATTCGAGT TTATATTCTATTCATCTTGGTAATTCAATTACAAAAGATTTGGTGTTATATAAATGATTCATAGACATCTGCATAGTGTA TACACTATACAGACATCTAGAGTTAAAAATGAAGAGAATAGAGAGAAGCATCAAATGTGATAAAAAGATGGATTTGATGA GAAGACAGAGAGATAGAGAGAGAAATGAAGTGTCTCTGGGTTGTCTATACTGAAAACTTAAAACTTGAATCTAGGTCTGC CTAGCTTGTAATTATTTTCACATTTTATCCATTGCAGTAGCAAATGGTTAATTACCAATAGGCCTAGTGAAGGAAGGAAT CTCAGCTTCTGTTCTGTATGCATGTATTGTTTTGACGTTTTAACACCAAGTTTTATATATACAGCATGTCCAAATATGAA AAGGAGACCTTGATGTATTTAAAATCTTAGCACTCATTAATTTGTTAAACCAATTTTTAGTACAACAGAAGAAGCATATC ATCTTGTTTAGCAATGTCAACCTTACAAGTTACATGTCTCTGGCTGTATTTTAGCTGCATTGTAGTGTATTGTGTGGATG TGAGACAACTACTAACAAATAATATGCTAGCTAAAGTTTCAGGATTTTGACAAGTTCCGCCCCGGTGCCCAAGCATATAT CTCTGGAGGCATTGCACCATTCATGAGGAGGTTCTGTGGCATTGCATATAAGTCTGAGATATCAAGATGATGGGCGCGTC CATTCTGGTAATGCTGATTCTGCATTGCAGCAGCAAGTTCATCATCTTCCAATGGCAGACGATCAAATGTAGCATGCATG AATGATGCAGCCATGATTACAACCGGGCCGGAAGCAATCAAAGCGCCAACAACAGCACCTCCCACAACTTGCCCTTGAGC ACCTGCTAAGTAAATTGTAAGGCCTGTGATCCCTGGTGGTGCTGGTGGGGGAAGCACTGATCCGAGCAGTGAGAGAATCT CAAATCGACCGTGGAGTGTCACAATGGCACCAGATGAGGCTGGCTGGCGCAATGTCACATTGGTAACACAGCCAGTCCCA TTGAGGATGCAAAGACCTCGTTGCTTTCTCCTTGCAAAGTTTAACAGGCTTTCATTCACATCACATCCAGAGGTCACTTC CATGGCATGAGCTTTCAGTGCATTTGCACTGTCTCTGGTGACAATTATTGGTGGCTTAGGCTTGTTTTTGGAGCCGGCAG GCCGGCCGCGAGGCCGCCTCAAGGTTTCCCCCTCTGCTGCTGCAGAAGAAACTGGTGAAACTACTTTTGGGACTTTAGTA TGGGTTAGAGTGTCACCAATGCCAGACATGTTTGGGTTCCCCTTGTCTTGTTCTTGCTTTTGGTCCATTTCACTAAACAC AAGACACTTTAGGATATCACCTATGGCAAACGTGCTGTAACAAAGAGTAAATCACTCTCTCCTGCTGTGTTGAACCTTAA GTAGTTGAATTTCTACAATAAATTTTATAGGACCCCAAAAGAATGATCACCTTTTAGGATGGAGTTAAGTAATACCAACC CCACCACAATTAGTTGTTTTTTGCATTAATCTGCCTAACTCTGACTAACTTTGCTTCATGTCAATTGCCTTCCCTATTAG ATATCTCATGCATAAAATTATTATGCTTTGTTTTTTAATCATAGCCACCTACAAACCATCTTTCTTTCATTATAGAGATA CTTCAGTTTTAGGAATCCCCCTGAGGTGAATTTAGTATAGAATAGTATGTGTGCTTGTAACATGAGAAGAATCGTATTAG ACAGAAGAATATTACTGCTCTTGTTTCATTGGGAACATGAGAACAAAGTACCTAGCTTTAAAAATAAAATAAACCATGGA ACCTCGTGTAATACAAAATCATGCTAGAACCACAGAAGGCAAGTTCAATATTTCTCTCTAATGCATGTACAATTGTAATG ACACTGAAGCATCTGAATGACAAAGTAGTTTATCTTATAAAATCTAAACTCATGTACAAATTATCCTTACAAAAAGCTTG GGGAAGGGGGGATATGCAGACAGTTAGCTGTTAGTGGTATTTTCGCCAAAATGGACCTTGCTGCTGAAATTCATCCAGAA AGTGGGTCTGAGAAGGATCAAGATCAATATTTCCAAGGGAACCAGATTCCTCTCCAGCCACCCTCCAGCCAAATCTCACC AATTATTTCTTATATTCAAAGGCCGAGATTAATTTAGAGTGAGAAATATTATTTTTTGTACAACTCATAATAACCTTTGC AGCCGCTGCACCATACAGCCACCGGCAAGTTTCTCAACTCATTTCCAGGACCTGGATATATTATTGGAGGCATACTTGGC TGTCCCTGGAGGCCTTGTTCAAGATTTTCTGCATTACCAGAAGAAGCTTTCTGCTGCTGCTGCAGATCGGCATCAGACGT CATTACCTGCAAGGATCAACATGAACAGCTAGCTGTCAAGAATATTGACCTCTTTAATTATTAGTCCATATTCACATTAT ACTTCTTTTAAGCTTATAAATAAT
CDS sequence (LotjaGi1g1v0041700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAACACTTCCTCCATCATTACCACCCTCCATATCCAAGTTCATCTCTGACCAACCATGCCTCACCATGCTCCAAAA CCACTGCACCACCATGAAAGACTTCCAACAGATTCATGCCCACATCATCAAAACTGGCCTTGCACATGACCACATTGCTG CTAGCCGTGTCCTCACATTCTGTGCCTCTTCATCTGGTGACATCAACTATGCTTACATGGTGTTCACCCGAATGCCAAGC CCAAATCTGTATTCTTGGAACACAATCATCAGAGGCTTCTCTAGAAGCTCAACCCCACAATTTGCTATATCACTCTTTGT TGACATGTTGTGTTCTGAAGTTCAACCTCAAAAGTTGACTTACCCTTCAGTTTTCAAAGCTTATGCTCAACTTGGTGCTG GCCATGATGGGGCTCAGCTTCATGGGAGGGTTGTAAAATTGGGCCTTGAGAAGGACCAGTTTATTAGTAACACTATCATA CACATGTATGCTAATAGTGGGTTATTAAGTGAAGCTAAAAGAGTGTTTGATGAAAAGGTGGAACTTGATGTGATAGCTTG CAATTCAATGATTATGGGTCTTGCTAAGTGTGGGAAAATTGATGAGTCTAGGAGGTTGTTTAATAACATGGCTGCAAGAA CTGCAGTTACTTGGAATTCTATGATTAGTGGTTATGTTAGGAATGGGAGGCTAAAGGAGGCATTGGAGGTTTTCAGCAAT ATGCAAGAAGAAGGGGTTGAGCCAAGTGAATTTACAATGGTGAGCTTGTTAAATGCTTGTGCTCACTTAGGATCACTTCA ACATGGGGAATGGGTTCATAGTTATATAAGAAGGAATAATTTTGAGTTGAATGTCATTGTCCTCACAGCAATAATTGACA TGTACTGCAAGTGTGGATCTATTGAGAATGCCATTGAAGTGTTTGAGAGGAACCCCAGAAGAGGATTATCATGTTGGAAC TCCATTATAATAGGGCTAGCCATGAATGGTCATGAAAGAGAAGCAGTTGAGTTCTTCTCTAAGCTTCAATCTTCAAATTT GAAGCCAGACAGAGTAAGTTTCATTGGTGTTTTAACTGCTTGTAAACACTTGGGAGCAATAGATGAAGCTAAATACTATT TTTCACTGATGGTGAATGCGTATGAGATTGAGCCATCAATAAAACACTACACTTGCATGGTTGAAGTGCTAGGTCAAGCT GCACTCCTAGAAGAAGCAGAAGAGCTAATAAAGGGTATGACTATAAAGCCAGATGCTATTATATGGGGATCTTTGCTCTC ATCATGTAGGAAGCATGGGAATGTAGAGATTGCGAAGCGGGCCGCACAAAAAGTTTGTCAGTTAGATCCAGGCGATGCCG GTGGCTATGTACTTATGTCTAATGTTCAGGCTGCATCAAACAAATTTGAAGAGGCAATGGAGCAAAGGATTTTGATGAAG GAAAATTTTACAGAGAAAGAACCAGGATGCAGTTCAATTGAATTATATGGAGAGGTTCATGAGTTTCTAGCTGGGGGGAG GCTACATCCTAAAACTCAAGAGATCTACTCTTTACTGAATGACCCCGGTTTTGCATTTCAAGATTGA
Protein sequence (LotjaGi1g1v0041700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTLPPSLPPSISKFISDQPCLTMLQNHCTTMKDFQQIHAHIIKTGLAHDHIAASRVLTFCASSSGDINYAYMVFTRMPS PNLYSWNTIIRGFSRSSTPQFAISLFVDMLCSEVQPQKLTYPSVFKAYAQLGAGHDGAQLHGRVVKLGLEKDQFISNTII HMYANSGLLSEAKRVFDEKVELDVIACNSMIMGLAKCGKIDESRRLFNNMAARTAVTWNSMISGYVRNGRLKEALEVFSN MQEEGVEPSEFTMVSLLNACAHLGSLQHGEWVHSYIRRNNFELNVIVLTAIIDMYCKCGSIENAIEVFERNPRRGLSCWN SIIIGLAMNGHEREAVEFFSKLQSSNLKPDRVSFIGVLTACKHLGAIDEAKYYFSLMVNAYEIEPSIKHYTCMVEVLGQA ALLEEAEELIKGMTIKPDAIIWGSLLSSCRKHGNVEIAKRAAQKVCQLDPGDAGGYVLMSNVQAASNKFEEAMEQRILMK ENFTEKEPGCSSIELYGEVHEFLAGGRLHPKTQEIYSLLNDPGFAFQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 25 | 138 | 114 | 3.3E-93 | – | |
| Gene3D | 27 | 179 | 153 | 6.1E-23 | ||
| ProSiteProfiles | 82 | 116 | 35 | 10.008 | ||
| Pfam | 84 | 111 | 28 | 0.0051 | ||
| ProSiteProfiles | 117 | 151 | 35 | 6.675 | ||
| PANTHER | 137 | 210 | 74 | 3.3E-93 | – | |
| ProSiteProfiles | 152 | 182 | 31 | 7.892 | ||
| Pfam | 157 | 181 | 25 | 0.0055 | ||
| Gene3D | 180 | 279 | 100 | 9.8E-29 | ||
| ProSiteProfiles | 183 | 213 | 31 | 9.832 | ||
| TIGRFAM | 186 | 210 | 25 | 4.3E-4 | ||
| Pfam | 186 | 210 | 25 | 8.3E-5 | ||
| PANTHER | 195 | 269 | 75 | 3.3E-93 | – | |
| ProSiteProfiles | 214 | 248 | 35 | 14.907 | ||
| SUPERFAMILY | 215 | 474 | 260 | 3.79E-5 | ||
| Pfam | 215 | 261 | 47 | 4.6E-16 | ||
| TIGRFAM | 216 | 250 | 35 | 2.6E-12 | ||
| ProSiteProfiles | 249 | 283 | 35 | 7.465 | ||
| PANTHER | 267 | 480 | 214 | 3.3E-93 | – | |
| Pfam | 280 | 309 | 30 | 1.0E-5 | ||
| ProSiteProfiles | 284 | 318 | 35 | 9.898 | ||
| Pfam | 318 | 346 | 29 | 7.8E-4 | ||
| TIGRFAM | 318 | 350 | 33 | 5.5E-5 | ||
| Gene3D | 319 | 498 | 180 | 1.0E-26 | ||
| ProSiteProfiles | 319 | 349 | 31 | 7.432 | ||
| ProSiteProfiles | 350 | 380 | 31 | 6.116 | ||
| ProSiteProfiles | 386 | 416 | 31 | 6.654 | ||
| Pfam | 389 | 413 | 25 | 0.25 | ||
| ProSiteProfiles | 418 | 448 | 31 | 6.193 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0041700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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