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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0045100 |
| Transcript ID | LotjaGi1g1v0045100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G17680.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A0B2S2J6|A0A0B2S2J6_GLYSO TMV resistance protein N; Found in the gene: LotjaGi1g1v0045100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:6127841..6133448) extracted from Lotus japonicus Gifu genome v1.2.
GACCATTTATTATTTTTGTAATCTCATACTTTTTATTATACCTTTCATCCCTGTCAGATCTGGATCCCATCGTTCTGTAT CAGCAATTTTATATGTTACTACTAACTACGTTGACCAAATGATTATTAGTTATAAAAGCTATAATCTTAGCTTTTAATTA AAACTGAATGGATGGTTGAGATTTTGCAGCAGAGAGATATATCCATCCTCCTATTTTCTTCTCTTTTATACTAACCATTT TTATAGCAGTTGTAGTCTTCAACCAATCCTCAAACCAAATCAAGCTTATACACTATGGCTGAATATGGAGAAGAGTCTGG TAGTTTTATCTATGATGTCTTCCTCAGTTTTAGAGGTGAAGATATTAGGTACAACTTTATAGACCATCTTCAAAAAGAGC TGAACACGAAGGATATCCGCACCTTCGCTGATGATAAGAGCCTGGTGATAGGGGAAGATATTTCGGTTGCTCTTCCCAAA GCCATTCTTGAATCTAAGATTTTGATTATTGTGTTTTCTGAGAATTATGCAACTTCCACATGGTGTCTTGACGAACTAGT CAAGATTCTTGACTGTGCCAGCAACAATGACAACAAACAACTTGCTTTCCCCATTTTTTACCACGTGGATCCATCAGATG TACGGCATCAGACAAAAAGTTACAGTAAAGCCATGACTGCACATGTGAAGAGCTTTGAAGAAAACCCAGAGAAAGTACAA GCATGGAAATCAGCTTTGCATGAGGCTGCCAACTTGAAAGGATACCATATTAGCACCGGGTATGTACCAATACTTCTTCT CTTCATGTATTTTTAGGTTCCAAGGTATTGTTATATTAGGTTCCAAAGTAATTTCTTTTGCTTTCTGCAGATTTCTGTTG TTTGATTTCCCTTCCCTCACTTTCAGTATATTAAGTTTTATTTTACTAACCATGTCTGTTAATTTGTTTTTATACTGGTT ATTATATTGTTTATTGATTTCCCCTGCAGGTCTGAAGTCAATCATATTAAAAAGATTGTTAACAAAGTCCATGCGAAAAT ACCTCCTAAACCTTTACCTGGTGAGGACCCAGTTGGACTTGAGCAACGCACAAAAGAGGTGACATCACTTCTAGACATGA AGCCTAATGATAATAGTGTATACATGTTAGGCATACATGGAATTGGTGGAATAGGGAAAACAGAACTTGCTAGAGCTTTG TATAACAAGATTGTGCACCAATTTCAAGCTGCAAGTTTTCTTGCCAATGTGAGAGAAAAGTCAACAATCAGTGGCCCAGA AGATCTACAAAAGACACTTTTATCAGAGATGAAGGAAGGGTTAAAAGTTGAGTTGGGAAGTACAAATAAAGGAATGTATG AAATTAGATGCAGACTTAGCAAGAAAAATGTTCTTTTGGTTCTTGATGATGTTGATGACAGACAACAGTTGAAAAACCTG GCAGGAGGATGCGATTGGTTTGGTCCAGGTAGCAGGATCATTATAACAACGAGGGATGAAGATTTGTTAATTGGTCATCA AGTTCAAAAGATTTATAAAATGACAGAACTTGAGGATCAACAATCTCTAGAGCTCTTCTGCCAGAAAGCCTTTGGAAAGA GCGAGCCTAAAACAGGTTATGAAGACATGTCTTCTCGTGCAGTAAATTATGCCAAGGGTCTTCCATTGGCATTAAAAGTC ATAGGCTCTGATTTGGCCAATGAAGAAAGTTTAAAAGCATGGGAGGATGCATTGATCGCATACGAGAGAAATCCCAATGC AGAGATTCAAGGCAAGCTTCAAACAAGCTATGAAAGATTAAAGGAGTACAATGCCAAGCAAGTTTTCCTGGACATAGCTT GTTTTTTCAAAGGGGAGAAAATTGAATATGTTGAGAATATACTAAAGAAATTCAAGGCTCCATATTATATTAAAGTGCTT GTTAAAAAATCTCTCCTAACAATTGAAGATGGTTGCTTGAACATGCATGATCTAATACAGGATATGGGTAGAGAGATTGT TAGGAAGAAGGCATCAGAAATTCCCAGTAAATATACCAGATTATGGTCTCATAAAGATGTTGTTGAAGTACTGTCTGAAG ATCTTGTAAGAATCATCTATTTTTGTTTTTGATTTATACATCATAGTGTGAGTGTGTGTGTTATTAATGGGCAATCTGCA ATATTGTAATTGATGAATGTTATTTTTATGTGCTTGATCTAAAGGGAAGTGATGAAATTGAGGGAATACTGCTTGATCCC CCCAAACGAGAAAAAGTAGATTTGATTGGTGCTACCTTTGAGAAGATGAGACGCCTCAGAATTCTCATTGTTCGAAATGC ATCCTTCAAAACAGAGCCTAAATATCTGCCAAATCATTTAAGCGTGCTTGATTGGGAGGAGTATCCTTCAAAGTCCTTCC CCCCAAATTTTCATCCGAAGGAAATCATTGTCTTCAATTTGCGTAAAAGCTATCTCACACTAGAAGAGCCATTTAAGGTA TAACATGTTTTATGTTCTTGTCATCATTTAATTTTTACATTTAACAATAACTCTAGTTTTTACTCACATAAACATGCTAC AAATGATTCGATTGACTTTTTCTTTTGGCAGGAATTTTCATGTCTCACTATTATGGATTTCTCACATAGTCAATCTATCA TTGTACTGCCTGATGTTTCTGGAGTTCAAAATTTGAAAGAATTGAGGCTTGATAATTGTGCTAACCTAACTGGAGTTCAT AAATCTCTAGGATTTCTCAAAAATCTTGCTCACTTGAGCGTTTTGGGATGCACCAAACTTAGAAATTTCCTGCGAACAAT GTTTTTACCATCTCTTGAGTTCCTTGACCTTAACTTATGTGTAAGTCTTGAACACTTCCCAAATATAGTGAACAACATGA ATAAGCCTTTGAAGATTCATATGGAATATACTGCGATTGAAGAGCTGCCAGCTTTCATTACTAATCTTACTGGGCTTGTT TGTATAGAGATGTCAGGTAGCAAGAAACTTAGACATCTTCCAAGTAGCTTATTCATGTTACCGAAATTGGCTTCCTTAAA AATTGGAGGATGTTGTCAACTTGGAGAGTCCTTCAGAAGGTTTGCACACAGCTCTGCAGCTGTCAATGGTCATTCAACTT TAGAAACATTGCATTTCGTAAATGGTGGTTTGTCGGATGAAGAGCTTCATGCAATTCTCAATTCGTTTTCAAAGTTACAA GAGTTGATTGCATCGGGAAACAATTTTGTATCCCTCCCTCCATGCATTAAGGACTCAATTCACTTGACAAGTCTTGATGT AAGTGATTGCAGGAAGCTTAAAAAATTCCTGAACTCCCTAATTTGAGTATTCTTAATATCCATGGTTGTGTGAAGCTTGA AGAGATCGCAGAGCTACCGTCTAGTATTCGAAAACTGAATGGAACATATTGCAAATCCTTAACTCCAGAGACATTAGACA TGCTATGGGAGCTTCAGGTATATATATTATTGCTTAGTCTCTCGAGTTCTATTTTAATTGTCGTGTGGTTGCTTTAATCG AACTCTGGATCACTTAGTCATAGAGACCCTCATACCATGTCATGAACCAATTATTCTAAAAGTTTAAACCGTTGTGTGAA GAACACATGAATGGTTATAGTTCTAAAGGGTTAAATGTTTTTTTAATATGATAGGTTACAAAAGAGATACACGGATTAGA AGTTGTGGTGCCCCAAATGAAGATTCCAAAATGCTTTGACTTGGAGGGCAATGGAGGAGATCCTTGTTTCTGGGCTCGTG GAAAATTCCCTATGGTTGCTTTAGCATTGGTCTTCAACAATGTGGAAGGAACAACCAGAGAATATCGCCATCAACTTGTT GTGCTTCACTTGGTCATCAACGGACGATGTGTGCCTCGCAAAGGCTACTGCACCTTCAGGATGGAAGCAGATCATATGTT AGTCTGTGACCTGCGACTTTTGTTTAGCGAAGAGGAGTGGCAGGGCCTTGATGCATTTCTTGAGCCTGGTCATTGGAATC AGGTGCAGGTTTCATACGAATCCCCATCGACCATGGCATTAAGATGTTGGGGTGTTTTCGTGTACAAGCAAGGAGAAACC AAGATGGGCGATGTCATGTTCACATGTCCAGGCCCAGAGTACTCATACATATCAACCACAACAGTTCCTCCTGCCAGAAA TCATATGCAGGAACTAAGGAAGATGATAGAGGGGTTAGCCTTAGATAATCTGCTTTATGTGATGTTGAAAGAAACAAAGG AACGGGATTACTTTGGAGATGATATGAGTGCTCTAATGGCAGCTGGGAAGGAGATATCCAAGGAGGCTAAGGCTGTATTA CAAGGCAAAGCGCTAGATAAAAAATCCATCCTCGCACAGTTATTGCAGATTATGAAGTCCCCTACCCAGATAAAGTTGAT AGAGCAAAACAAACTTCTGCGCCAGAAATTTGAAAGAAATGAATCTACTACTGCTGCTTCTACTCCGGATATTGAAGACG GTTGGAAGCATAAATATCATGAACTGCTGGGAAAGCTCAACAGCGTTACTCAATCTGCTGCTGAGTTTCATAATATTTCA AAGCGTAACAGAGATATTGGCTGCGAGAGCTTTACAAAGTCTGGGAAGCTAGCTGCTATTTTGAAAGCAAGAGGTGAAGA GTTGCGAGGGATTTATGTTGCTGAGCTCAAGATGTGAAGAGTGCAATATATTTGAACGGACTGAGAAATGGATTCCTTGA AGCACAGGTCATCTTGCTTGCTCTGTACATGGACAGAGCAACTCCACAACATGTTAATGATGATGGGCCAGACAAATACA AAGGAATATGTTGTCACCCATGTTGGTGACACTTCTACCCCTCCTCTTTGTTGAGTTATTTTTTATGCTGTTGATGTGTT GTTTATTTAAGATAGATTCTTAGCTGGTTGTACTAGTAATAAAATTGTCACTAACAATCTGTTCGTCTACTAAAACTGTA AAAGTGAACAACATTCTTTGACGTGAATAAGCTATGTGGAAGATATTTGAGTTTCCTGCTACCTGTCAACTCTACAGAAA CAAGCCCAGTAAAATTACCAATGGAATATGGCAGCTTCTCAGTTGCAGTATTTATCATATAAATCTTCAGTGGCTGGTTC ATGTTGTTCACTATCTCTGGAAAATGTTTTAGTCTTATGCCTAAATTAAGGTCAAGGACTTCTAGACATGGTAAATGCAT GCTTCGCGGGAAATCTTTAAGTTTGGCGCATCTAGAAGCACTTAAGAAAGCACGTATTGGAGCAATCCGACAAATTCATC AACCTAGATTAGGTTCTTGCAATTGTCAAGTCTTATTTCTATCAAATCTGGAACTTTAGATACACTAGGCATTGCAGTGA TAGATTGATTATGTGAGAAATTCATGGTATTCAGACATGAAAAATTCTACCCAAAGAAAAATTCAATCAAATGATTTTCT GGTCCCTTCAACATGTTCTATTCTCTCCCTTTTGAAGAAGCTTATGCCTAAGAAAACTTGCTTGGCATTGTAGTGCAATT TATCATAGCTTCTTTGGAGCACGTATTGTATTGAATCCTTGTATCTAGATAGTGTTGGTGATTTTAGAATCATCAATGTA TTTTAGTA
CDS sequence (LotjaGi1g1v0045100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAATATGGAGAAGAGTCTGGTAGTTTTATCTATGATGTCTTCCTCAGTTTTAGAGGTGAAGATATTAGGTACAA CTTTATAGACCATCTTCAAAAAGAGCTGAACACGAAGGATATCCGCACCTTCGCTGATGATAAGAGCCTGGTGATAGGGG AAGATATTTCGGTTGCTCTTCCCAAAGCCATTCTTGAATCTAAGATTTTGATTATTGTGTTTTCTGAGAATTATGCAACT TCCACATGGTGTCTTGACGAACTAGTCAAGATTCTTGACTGTGCCAGCAACAATGACAACAAACAACTTGCTTTCCCCAT TTTTTACCACGTGGATCCATCAGATGTACGGCATCAGACAAAAAGTTACAGTAAAGCCATGACTGCACATGTGAAGAGCT TTGAAGAAAACCCAGAGAAAGTACAAGCATGGAAATCAGCTTTGCATGAGGCTGCCAACTTGAAAGGATACCATATTAGC ACCGGGTCTGAAGTCAATCATATTAAAAAGATTGTTAACAAAGTCCATGCGAAAATACCTCCTAAACCTTTACCTGGTGA GGACCCAGTTGGACTTGAGCAACGCACAAAAGAGGTGACATCACTTCTAGACATGAAGCCTAATGATAATAGTGTATACA TGTTAGGCATACATGGAATTGGTGGAATAGGGAAAACAGAACTTGCTAGAGCTTTGTATAACAAGATTGTGCACCAATTT CAAGCTGCAAGTTTTCTTGCCAATGTGAGAGAAAAGTCAACAATCAGTGGCCCAGAAGATCTACAAAAGACACTTTTATC AGAGATGAAGGAAGGGTTAAAAGTTGAGTTGGGAAGTACAAATAAAGGAATGTATGAAATTAGATGCAGACTTAGCAAGA AAAATGTTCTTTTGGTTCTTGATGATGTTGATGACAGACAACAGTTGAAAAACCTGGCAGGAGGATGCGATTGGTTTGGT CCAGGTAGCAGGATCATTATAACAACGAGGGATGAAGATTTGTTAATTGGTCATCAAGTTCAAAAGATTTATAAAATGAC AGAACTTGAGGATCAACAATCTCTAGAGCTCTTCTGCCAGAAAGCCTTTGGAAAGAGCGAGCCTAAAACAGGTTATGAAG ACATGTCTTCTCGTGCAGTAAATTATGCCAAGGGTCTTCCATTGGCATTAAAAGTCATAGGCTCTGATTTGGCCAATGAA GAAAGTTTAAAAGCATGGGAGGATGCATTGATCGCATACGAGAGAAATCCCAATGCAGAGATTCAAGGCAAGCTTCAAAC AAGCTATGAAAGATTAAAGGAGTACAATGCCAAGCAAGTTTTCCTGGACATAGCTTGTTTTTTCAAAGGGGAGAAAATTG AATATGTTGAGAATATACTAAAGAAATTCAAGGCTCCATATTATATTAAAGTGCTTGTTAAAAAATCTCTCCTAACAATT GAAGATGGTTGCTTGAACATGCATGATCTAATACAGGATATGGGTAGAGAGATTGTTAGGAAGAAGGCATCAGAAATTCC CAGTAAATATACCAGATTATGGTCTCATAAAGATGTTGTTGAAGTACTGTCTGAAGATCTTGGAAGTGATGAAATTGAGG GAATACTGCTTGATCCCCCCAAACGAGAAAAAGTAGATTTGATTGGTGCTACCTTTGAGAAGATGAGACGCCTCAGAATT CTCATTGTTCGAAATGCATCCTTCAAAACAGAGCCTAAATATCTGCCAAATCATTTAAGCGTGCTTGATTGGGAGGAGTA TCCTTCAAAGTCCTTCCCCCCAAATTTTCATCCGAAGGAAATCATTGTCTTCAATTTGCGTAAAAGCTATCTCACACTAG AAGAGCCATTTAAGGAATTTTCATGTCTCACTATTATGGATTTCTCACATAGTCAATCTATCATTGTACTGCCTGATGTT TCTGGAGTTCAAAATTTGAAAGAATTGAGGCTTGATAATTGTGCTAACCTAACTGGAGTTCATAAATCTCTAGGATTTCT CAAAAATCTTGCTCACTTGAGCGTTTTGGGATGCACCAAACTTAGAAATTTCCTGCGAACAATGTTTTTACCATCTCTTG AGTTCCTTGACCTTAACTTATGTGTAAGTCTTGAACACTTCCCAAATATAGTGAACAACATGAATAAGCCTTTGAAGATT CATATGGAATATACTGCGATTGAAGAGCTGCCAGCTTTCATTACTAATCTTACTGGGCTTGTTTGTATAGAGATGTCAGG TAGCAAGAAACTTAGACATCTTCCAAGTAGCTTATTCATGTTACCGAAATTGGCTTCCTTAAAAATTGGAGGATGTTGTC AACTTGGAGAGTCCTTCAGAAGGTTTGCACACAGCTCTGCAGCTGTCAATGGTCATTCAACTTTAGAAACATTGCATTTC GTAAATGGTGGTTTGTCGGATGAAGAGCTTCATGCAATTCTCAATTCGTTTTCAAAGTTACAAGAGTTGATTGCATCGGG AAACAATTTTGTATCCCTCCCTCCATGCATTAAGGACTCAATTCACTTGACAAGTCTTGATGTAAGTGATTGCAGGAAGC TTAAAAAATTCCTGAACTCCCTAATTTGA
Protein sequence (LotjaGi1g1v0045100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEYGEESGSFIYDVFLSFRGEDIRYNFIDHLQKELNTKDIRTFADDKSLVIGEDISVALPKAILESKILIIVFSENYAT STWCLDELVKILDCASNNDNKQLAFPIFYHVDPSDVRHQTKSYSKAMTAHVKSFEENPEKVQAWKSALHEAANLKGYHIS TGSEVNHIKKIVNKVHAKIPPKPLPGEDPVGLEQRTKEVTSLLDMKPNDNSVYMLGIHGIGGIGKTELARALYNKIVHQF QAASFLANVREKSTISGPEDLQKTLLSEMKEGLKVELGSTNKGMYEIRCRLSKKNVLLVLDDVDDRQQLKNLAGGCDWFG PGSRIIITTRDEDLLIGHQVQKIYKMTELEDQQSLELFCQKAFGKSEPKTGYEDMSSRAVNYAKGLPLALKVIGSDLANE ESLKAWEDALIAYERNPNAEIQGKLQTSYERLKEYNAKQVFLDIACFFKGEKIEYVENILKKFKAPYYIKVLVKKSLLTI EDGCLNMHDLIQDMGREIVRKKASEIPSKYTRLWSHKDVVEVLSEDLGSDEIEGILLDPPKREKVDLIGATFEKMRRLRI LIVRNASFKTEPKYLPNHLSVLDWEEYPSKSFPPNFHPKEIIVFNLRKSYLTLEEPFKEFSCLTIMDFSHSQSIIVLPDV SGVQNLKELRLDNCANLTGVHKSLGFLKNLAHLSVLGCTKLRNFLRTMFLPSLEFLDLNLCVSLEHFPNIVNNMNKPLKI HMEYTAIEELPAFITNLTGLVCIEMSGSKKLRHLPSSLFMLPKLASLKIGGCCQLGESFRRFAHSSAAVNGHSTLETLHF VNGGLSDEELHAILNSFSKLQELIASGNNFVSLPPCIKDSIHLTSLDVSDCRKLKKFLNSLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 7 | 157 | 151 | 1.12E-38 | ||
| Gene3D | 8 | 176 | 169 | 2.3E-61 | ||
| PANTHER | 9 | 855 | 847 | 0.0 | – | |
| PANTHER | 9 | 855 | 847 | 0.0 | – | |
| ProSiteProfiles | 11 | 154 | 144 | 28.106 | ||
| SMART | 12 | 154 | 143 | 1.4E-38 | ||
| Pfam | 13 | 178 | 166 | 4.4E-40 | ||
| Gene3D | 177 | 344 | 168 | 4.5E-29 | – | |
| SUPERFAMILY | 183 | 444 | 262 | 8.06E-54 | ||
| Pfam | 195 | 432 | 238 | 3.7E-29 | ||
| PRINTS | 214 | 229 | 16 | 1.3E-21 | – | |
| PRINTS | 290 | 304 | 15 | 1.3E-21 | – | |
| PRINTS | 383 | 397 | 15 | 1.3E-21 | – | |
| SUPERFAMILY | 487 | 855 | 369 | 7.14E-35 | – | |
| Gene3D | 526 | 695 | 170 | 3.1E-12 | ||
| PRINTS | 688 | 704 | 17 | 1.3E-21 | – | |
| Gene3D | 696 | 862 | 167 | 9.8E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi1g1v0045100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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