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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0045100 |
| Transcript ID | LotjaGi1g1v0045100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G17680.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K3B3|G7K3B3_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi1g1v0045100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:6128055..6133346) extracted from Lotus japonicus Gifu genome v1.2.
TTTCTTCTCTTTTATACTAACCATTTTTATAGCAGTTGTAGTCTTCAACCAATCCTCAAACCAAATCAAGCTTATACACT ATGGCTGAATATGGAGAAGAGTCTGGTAGTTTTATCTATGATGTCTTCCTCAGTTTTAGAGGTGAAGATATTAGGTACAA CTTTATAGACCATCTTCAAAAAGAGCTGAACACGAAGGATATCCGCACCTTCGCTGATGATAAGAGCCTGGTGATAGGGG AAGATATTTCGGTTGCTCTTCCCAAAGCCATTCTTGAATCTAAGATTTTGATTATTGTGTTTTCTGAGAATTATGCAACT TCCACATGGTGTCTTGACGAACTAGTCAAGATTCTTGACTGTGCCAGCAACAATGACAACAAACAACTTGCTTTCCCCAT TTTTTACCACGTGGATCCATCAGATGTACGGCATCAGACAAAAAGTTACAGTAAAGCCATGACTGCACATGTGAAGAGCT TTGAAGAAAACCCAGAGAAAGTACAAGCATGGAAATCAGCTTTGCATGAGGCTGCCAACTTGAAAGGATACCATATTAGC ACCGGGTATGTACCAATACTTCTTCTCTTCATGTATTTTTAGGTTCCAAGGTATTGTTATATTAGGTTCCAAAGTAATTT CTTTTGCTTTCTGCAGATTTCTGTTGTTTGATTTCCCTTCCCTCACTTTCAGTATATTAAGTTTTATTTTACTAACCATG TCTGTTAATTTGTTTTTATACTGGTTATTATATTGTTTATTGATTTCCCCTGCAGGTCTGAAGTCAATCATATTAAAAAG ATTGTTAACAAAGTCCATGCGAAAATACCTCCTAAACCTTTACCTGGTGAGGACCCAGTTGGACTTGAGCAACGCACAAA AGAGGTGACATCACTTCTAGACATGAAGCCTAATGATAATAGTGTATACATGTTAGGCATACATGGAATTGGTGGAATAG GGAAAACAGAACTTGCTAGAGCTTTGTATAACAAGATTGTGCACCAATTTCAAGCTGCAAGTTTTCTTGCCAATGTGAGA GAAAAGTCAACAATCAGTGGCCCAGAAGATCTACAAAAGACACTTTTATCAGAGATGAAGGAAGGGTTAAAAGTTGAGTT GGGAAGTACAAATAAAGGAATGTATGAAATTAGATGCAGACTTAGCAAGAAAAATGTTCTTTTGGTTCTTGATGATGTTG ATGACAGACAACAGTTGAAAAACCTGGCAGGAGGATGCGATTGGTTTGGTCCAGGTAGCAGGATCATTATAACAACGAGG GATGAAGATTTGTTAATTGGTCATCAAGTTCAAAAGATTTATAAAATGACAGAACTTGAGGATCAACAATCTCTAGAGCT CTTCTGCCAGAAAGCCTTTGGAAAGAGCGAGCCTAAAACAGGTTATGAAGACATGTCTTCTCGTGCAGTAAATTATGCCA AGGGTCTTCCATTGGCATTAAAAGTCATAGGCTCTGATTTGGCCAATGAAGAAAGTTTAAAAGCATGGGAGGATGCATTG ATCGCATACGAGAGAAATCCCAATGCAGAGATTCAAGGCAAGCTTCAAACAAGCTATGAAAGATTAAAGGAGTACAATGC CAAGCAAGTTTTCCTGGACATAGCTTGTTTTTTCAAAGGGGAGAAAATTGAATATGTTGAGAATATACTAAAGAAATTCA AGGCTCCATATTATATTAAAGTGCTTGTTAAAAAATCTCTCCTAACAATTGAAGATGGTTGCTTGAACATGCATGATCTA ATACAGGATATGGGTAGAGAGATTGTTAGGAAGAAGGCATCAGAAATTCCCAGTAAATATACCAGATTATGGTCTCATAA AGATGTTGTTGAAGTACTGTCTGAAGATCTTGTAAGAATCATCTATTTTTGTTTTTGATTTATACATCATAGTGTGAGTG TGTGTGTTATTAATGGGCAATCTGCAATATTGTAATTGATGAATGTTATTTTTATGTGCTTGATCTAAAGGGAAGTGATG AAATTGAGGGAATACTGCTTGATCCCCCCAAACGAGAAAAAGTAGATTTGATTGGTGCTACCTTTGAGAAGATGAGACGC CTCAGAATTCTCATTGTTCGAAATGCATCCTTCAAAACAGAGCCTAAATATCTGCCAAATCATTTAAGCGTGCTTGATTG GGAGGAGTATCCTTCAAAGTCCTTCCCCCCAAATTTTCATCCGAAGGAAATCATTGTCTTCAATTTGCGTAAAAGCTATC TCACACTAGAAGAGCCATTTAAGGTATAACATGTTTTATGTTCTTGTCATCATTTAATTTTTACATTTAACAATAACTCT AGTTTTTACTCACATAAACATGCTACAAATGATTCGATTGACTTTTTCTTTTGGCAGGAATTTTCATGTCTCACTATTAT GGATTTCTCACATAGTCAATCTATCATTGTACTGCCTGATGTTTCTGGAGTTCAAAATTTGAAAGAATTGAGGCTTGATA ATTGTGCTAACCTAACTGGAGTTCATAAATCTCTAGGATTTCTCAAAAATCTTGCTCACTTGAGCGTTTTGGGATGCACC AAACTTAGAAATTTCCTGCGAACAATGTTTTTACCATCTCTTGAGTTCCTTGACCTTAACTTATGTGTAAGTCTTGAACA CTTCCCAAATATAGTGAACAACATGAATAAGCCTTTGAAGATTCATATGGAATATACTGCGATTGAAGAGCTGCCAGCTT TCATTACTAATCTTACTGGGCTTGTTTGTATAGAGATGTCAGGTAGCAAGAAACTTAGACATCTTCCAAGTAGCTTATTC ATGTTACCGAAATTGGCTTCCTTAAAAATTGGAGGATGTTGTCAACTTGGAGAGTCCTTCAGAAGGTTTGCACACAGCTC TGCAGCTGTCAATGGTCATTCAACTTTAGAAACATTGCATTTCGTAAATGGTGGTTTGTCGGATGAAGAGCTTCATGCAA TTCTCAATTCGTTTTCAAAGTTACAAGAGTTGATTGCATCGGGAAACAATTTTGTATCCCTCCCTCCATGCATTAAGGAC TCAATTCACTTGACAAGTCTTGATGTAAGTGATTGCAGGAAGCTTAAAAAATTCCTGAACTCCCTAATTTGAGTATTCTT AATATCCATGGTTGTGTGAAGCTTGAAGAGATCGCAGAGCTACCGTCTAGTATTCGAAAACTGAATGGAACATATTGCAA ATCCTTAACTCCAGAGACATTAGACATGCTATGGGAGCTTCAGGTATATATATTATTGCTTAGTCTCTCGAGTTCTATTT TAATTGTCGTGTGGTTGCTTTAATCGAACTCTGGATCACTTAGTCATAGAGACCCTCATACCATGTCATGAACCAATTAT TCTAAAAGTTTAAACCGTTGTGTGAAGAACACATGAATGGTTATAGTTCTAAAGGGTTAAATGTTTTTTTAATATGATAG GTTACAAAAGAGATACACGGATTAGAAGTTGTGGTGCCCCAAATGAAGATTCCAAAATGCTTTGACTTGGAGGGCAATGG AGGAGATCCTTGTTTCTGGGCTCGTGGAAAATTCCCTATGGTTGCTTTAGCATTGGTCTTCAACAATGTGGAAGGAACAA CCAGAGAATATCGCCATCAACTTGTTGTGCTTCACTTGGTCATCAACGGACGATGTGTGCCTCGCAAAGGCTACTGCACC TTCAGGATGGAAGCAGATCATATGTTAGTCTGTGACCTGCGACTTTTGTTTAGCGAAGAGGAGTGGCAGGGCCTTGATGC ATTTCTTGAGCCTGGTCATTGGAATCAGGTGCAGGTTTCATACGAATCCCCATCGACCATGGCATTAAGATGTTGGGGTG TTTTCGTGTACAAGCAAGGAGAAACCAAGATGGGCGATGTCATGTTCACATGTCCAGGCCCAGAGTACTCATACATATCA ACCACAACAGTTCCTCCTGCCAGAAATCATATGCAGGAACTAAGGAAGATGATAGAGGGGTTAGCCTTAGATAATCTGCT TTATGTGATGTTGAAAGAAACAAAGGAACGGGATTACTTTGGAGATGATATGAGTGCTCTAATGGCAGCTGGGAAGGAGA TATCCAAGGAGGCTAAGGCTGTATTACAAGGCAAAGCGCTAGATAAAAAATCCATCCTCGCACAGTTATTGCAGATTATG AAGTCCCCTACCCAGATAAAGTTGATAGAGCAAAACAAACTTCTGCGCCAGAAATTTGAAAGAAATGAATCTACTACTGC TGCTTCTACTCCGGATATTGAAGACGGTTGGAAGCATAAATATCATGAACTGCTGGGAAAGCTCAACAGCGTTACTCAAT CTGCTGCTGAGTTTCATAATATTTCAAAGCGTAACAGAGATATTGGCTGCGAGAGCTTTACAAAGTCTGGGAAGCTAGCT GCTATTTTGAAAGCAAGAGGTGAAGAGTTGCGAGGGATTTATGTTGCTGAGCTCAAGATGTGAAGAGTGCAATATATTTG AACGGACTGAGAAATGGATTCCTTGAAGCACAGGTCATCTTGCTTGCTCTGTACATGGACAGAGCAACTCCACAACATGT TAATGATGATGGGCCAGACAAATACAAAGGAATATGTTGTCACCCATGTTGGTGACACTTCTACCCCTCCTCTTTGTTGA GTTATTTTTTATGCTGTTGATGTGTTGTTTATTTAAGATAGATTCTTAGCTGGTTGTACTAGTAATAAAATTGTCACTAA CAATCTGTTCGTCTACTAAAACTGTAAAAGTGAACAACATTCTTTGACGTGAATAAGCTATGTGGAAGATATTTGAGTTT CCTGCTACCTGTCAACTCTACAGAAACAAGCCCAGTAAAATTACCAATGGAATATGGCAGCTTCTCAGTTGCAGTATTTA TCATATAAATCTTCAGTGGCTGGTTCATGTTGTTCACTATCTCTGGAAAATGTTTTAGTCTTATGCCTAAATTAAGGTCA AGGACTTCTAGACATGGTAAATGCATGCTTCGCGGGAAATCTTTAAGTTTGGCGCATCTAGAAGCACTTAAGAAAGCACG TATTGGAGCAATCCGACAAATTCATCAACCTAGATTAGGTTCTTGCAATTGTCAAGTCTTATTTCTATCAAATCTGGAAC TTTAGATACACTAGGCATTGCAGTGATAGATTGATTATGTGAGAAATTCATGGTATTCAGACATGAAAAATTCTACCCAA AGAAAAATTCAATCAAATGATTTTCTGGTCCCTTCAACATGTTCTATTCTCTCCCTTTTGAAGAAGCTTATGCCTAAGAA AACTTGCTTGGC
CDS sequence (LotjaGi1g1v0045100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAATATGGAGAAGAGTCTGGTAGTTTTATCTATGATGTCTTCCTCAGTTTTAGAGGTGAAGATATTAGGTACAA CTTTATAGACCATCTTCAAAAAGAGCTGAACACGAAGGATATCCGCACCTTCGCTGATGATAAGAGCCTGGTGATAGGGG AAGATATTTCGGTTGCTCTTCCCAAAGCCATTCTTGAATCTAAGATTTTGATTATTGTGTTTTCTGAGAATTATGCAACT TCCACATGGTGTCTTGACGAACTAGTCAAGATTCTTGACTGTGCCAGCAACAATGACAACAAACAACTTGCTTTCCCCAT TTTTTACCACGTGGATCCATCAGATGTACGGCATCAGACAAAAAGTTACAGTAAAGCCATGACTGCACATGTGAAGAGCT TTGAAGAAAACCCAGAGAAAGTACAAGCATGGAAATCAGCTTTGCATGAGGCTGCCAACTTGAAAGGATACCATATTAGC ACCGGGTCTGAAGTCAATCATATTAAAAAGATTGTTAACAAAGTCCATGCGAAAATACCTCCTAAACCTTTACCTGGTGA GGACCCAGTTGGACTTGAGCAACGCACAAAAGAGGTGACATCACTTCTAGACATGAAGCCTAATGATAATAGTGTATACA TGTTAGGCATACATGGAATTGGTGGAATAGGGAAAACAGAACTTGCTAGAGCTTTGTATAACAAGATTGTGCACCAATTT CAAGCTGCAAGTTTTCTTGCCAATGTGAGAGAAAAGTCAACAATCAGTGGCCCAGAAGATCTACAAAAGACACTTTTATC AGAGATGAAGGAAGGGTTAAAAGTTGAGTTGGGAAGTACAAATAAAGGAATGTATGAAATTAGATGCAGACTTAGCAAGA AAAATGTTCTTTTGGTTCTTGATGATGTTGATGACAGACAACAGTTGAAAAACCTGGCAGGAGGATGCGATTGGTTTGGT CCAGGTAGCAGGATCATTATAACAACGAGGGATGAAGATTTGTTAATTGGTCATCAAGTTCAAAAGATTTATAAAATGAC AGAACTTGAGGATCAACAATCTCTAGAGCTCTTCTGCCAGAAAGCCTTTGGAAAGAGCGAGCCTAAAACAGGTTATGAAG ACATGTCTTCTCGTGCAGTAAATTATGCCAAGGGTCTTCCATTGGCATTAAAAGTCATAGGCTCTGATTTGGCCAATGAA GAAAGTTTAAAAGCATGGGAGGATGCATTGATCGCATACGAGAGAAATCCCAATGCAGAGATTCAAGGCAAGCTTCAAAC AAGCTATGAAAGATTAAAGGAGTACAATGCCAAGCAAGTTTTCCTGGACATAGCTTGTTTTTTCAAAGGGGAGAAAATTG AATATGTTGAGAATATACTAAAGAAATTCAAGGCTCCATATTATATTAAAGTGCTTGTTAAAAAATCTCTCCTAACAATT GAAGATGGTTGCTTGAACATGCATGATCTAATACAGGATATGGGTAGAGAGATTGTTAGGAAGAAGGCATCAGAAATTCC CAGTAAATATACCAGATTATGGTCTCATAAAGATGTTGTTGAAGTACTGTCTGAAGATCTTGTAAGAATCATCTATTTTT GTTTTTGA
Protein sequence (LotjaGi1g1v0045100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEYGEESGSFIYDVFLSFRGEDIRYNFIDHLQKELNTKDIRTFADDKSLVIGEDISVALPKAILESKILIIVFSENYAT STWCLDELVKILDCASNNDNKQLAFPIFYHVDPSDVRHQTKSYSKAMTAHVKSFEENPEKVQAWKSALHEAANLKGYHIS TGSEVNHIKKIVNKVHAKIPPKPLPGEDPVGLEQRTKEVTSLLDMKPNDNSVYMLGIHGIGGIGKTELARALYNKIVHQF QAASFLANVREKSTISGPEDLQKTLLSEMKEGLKVELGSTNKGMYEIRCRLSKKNVLLVLDDVDDRQQLKNLAGGCDWFG PGSRIIITTRDEDLLIGHQVQKIYKMTELEDQQSLELFCQKAFGKSEPKTGYEDMSSRAVNYAKGLPLALKVIGSDLANE ESLKAWEDALIAYERNPNAEIQGKLQTSYERLKEYNAKQVFLDIACFFKGEKIEYVENILKKFKAPYYIKVLVKKSLLTI EDGCLNMHDLIQDMGREIVRKKASEIPSKYTRLWSHKDVVEVLSEDLVRIIYFCF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 7 | 157 | 151 | 4.97E-39 | ||
| Gene3D | 8 | 176 | 169 | 7.0E-62 | ||
| PANTHER | 9 | 526 | 518 | 4.0E-264 | – | |
| PANTHER | 9 | 526 | 518 | 4.0E-264 | – | |
| ProSiteProfiles | 11 | 154 | 144 | 28.106 | ||
| SMART | 12 | 154 | 143 | 1.4E-38 | ||
| Pfam | 13 | 178 | 166 | 1.8E-40 | ||
| Gene3D | 177 | 344 | 168 | 1.9E-29 | – | |
| SUPERFAMILY | 183 | 444 | 262 | 2.09E-55 | ||
| Pfam | 195 | 432 | 238 | 1.4E-29 | ||
| PRINTS | 214 | 229 | 16 | 8.0E-18 | – | |
| PRINTS | 290 | 304 | 15 | 8.0E-18 | – | |
| PRINTS | 383 | 397 | 15 | 8.0E-18 | – | |
| SUPERFAMILY | 420 | 523 | 104 | 1.77E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi1g1v0045100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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