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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0075000 |
| Transcript ID | LotjaGi1g1v0075000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein; TAIR: AT3G46510.1 plant U-box 13; Swiss-Prot: sp|E4NKF8|PUB1_MEDTR U-box domain-containing protein 1; TrEMBL-Plants: tr|A0A151U1I0|A0A151U1I0_CAJCA U-box domain-containing protein 13; Found in the gene: LotjaGi1g1v0075000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:10838675..10840738) extracted from Lotus japonicus Gifu genome v1.2.
ATGAATGATGCTGTATCCGCAATGATGATTTCCTCAGGCTTGTTACCAACTGGGACTTTGCTAGATTCATTGATTCACAT CTCTAATGAAGTTGGTTCAATGGAGAAGCTTCCCTTGGTCCACACAAGGAATGTCTCATCTATGATAAGGAGGATCAAGC TTCTTTCTTCTTTGTTTGAAGAGATTCAAGAAACAGATTCCCCACTTCCTCCTTCTTCAATCCTGTGCTTCACAGAGCTC TACTCAGTGATTACAAGAGTGAAAGATTTGATCCAAGAGTGCAAGGATGGAAGCACTCTCTGGGGTCTCATACAGTTAGA GCTCATTTCTAACCAATTTTATGTGCTTGCAAAGGAGCTAGGAAGGGCCTTAGATATCCTACCTCTGAAATTGCTCAATA TAACAGCAGATACAAAGGAGCAAGTGCAGCTTCTCCAAAAACAAGCAAAGAGGGTTGAGTTACTCATTGATCCAAGAGAG CTTCAAAGAAGAGAACAGCTTCTACAAGTAATGGCAAACAACAGTTTGCGGAACAAGAAGAACAAAGGGTTCATTGATTT TGGGAAAGTGGAAGATATATTAAGCAGCATTGGTTTGAGAACTCCATCAGATTATGATGGAGAAATATCCAATTTGGAGG TTGAAGCTCAGAATCAGGCCGGCACAGGAGGACTAATTGTTGTCTCCAATATAAACAATCTCATATCTCTAGTTTCTTAT TCCAAATCCATGATATTCAGAAACGGCGAAAATGATAGAGATGAAGAAGAGTGTAAGCCACTGTCTTTGATTTTATACAA CAAAAACCATGATAGTTCTTCATCTTCTATGTCCATTTCAGTGATACCAAACATTCCTGATGAATTCCGTTGCCCGATTT CACTTGATTTAATGAGGGACCCTGTGATTGTGTCATCCGGGCACACTTATGATCGAAATTCGATTGCACAATGGATAAAC ACAGGGCATCACACTTGCCCCAAGAGTGGTCAAAGGCTAATTCACACTGCTCTAATTCCAAACTATGCTTTAAAGAGCCT TGTTCAGCAATGGTGTTATGAGAACAATGTCCCGGTGAATGAGCCTATGAATTCTCTCTTAAACAACAGCAGAAGCAAGA AGAACTTGAAAGAGGAAGCTATTGATCATATTTCAGCAAACAAAGCAGCTTCAGATGCTGTTAAAATGACAGCAGAGTTT CTAGTTGGAAAATTGGCAACCGGCTCAGTTGATATCCAAAGACAAGCCGCGTATGAGCTTCGGTTACTCGCGAAATCCGG CACGAACAACCGAAGCATCATACCTGAGGCAGGTGCAATTCCCTTTCTTGTGACACTTCTAGCATCTCAAGACTCTAGAA CTCAGGAGCATGCAGTCACAGCCTTGTTCAACCTGTCCATCTTAGACAACAACAAGATTTTGATCATGGTAGCAGGAGCA GTTGACAACATAGTAGAAGTGCTAGAATCAGGAAAAACCATGGAGGCAAGAGAAAATGCTGCAGCAGCAATATACAGCTT GTCTATGGTTGATGATTGCAAAGTGCAAATTGGGGCATGTACAAGGGCAATACCTGCATTAGTTGCACTTTTGAAAGAAG GTACACCAATTGGGAAAAGAGATGCTGCTTCTGCAATTTTCAATCTTGCAGTTTACAATCCTAACAAATCAAGCATTGTT AAAGCTGGGGCAGTTCCTTTGTTAGTTGAGTTGTTGATGGATGATAAGGCTGGGATAACAGATGATGTGTTGGCTGTGCT TGCTGTGCTTCAAGGTTGCTCTGAAGGGCTTGAAGAGATAAGGGATAATAGAGCTTTGGTGCCACTTCTTATTGATCTTT TGAGATTTGGGTCAGTGAAAGGGAAGGAGAACTCAATAACTCTTCTGCTTGGGTTGTGCAAGGAAGAAGGGGAGCTAGTG GCGAGGCGTCTGTTGGCGAATCCAAGGAGTGTTCCTTCTCTTCAGAGCTTGGCTGCTGATGGTTCTTTGAGAGCTAGGAG AAAAGCAGATGCCCTGCTTCGGTTGCTCAATAGGTGCTGCTCTCAACCTCATCATTCTGTGTGA
CDS sequence (LotjaGi1g1v0075000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGATGCTGTATCCGCAATGATGATTTCCTCAGGCTTGTTACCAACTGGGACTTTGCTAGATTCATTGATTCACAT CTCTAATGAAGTTGGTTCAATGGAGAAGCTTCCCTTGGTCCACACAAGGAATGTCTCATCTATGATAAGGAGGATCAAGC TTCTTTCTTCTTTGTTTGAAGAGATTCAAGAAACAGATTCCCCACTTCCTCCTTCTTCAATCCTGTGCTTCACAGAGCTC TACTCAGTGATTACAAGAGTGAAAGATTTGATCCAAGAGTGCAAGGATGGAAGCACTCTCTGGGGTCTCATACAGTTAGA GCTCATTTCTAACCAATTTTATGTGCTTGCAAAGGAGCTAGGAAGGGCCTTAGATATCCTACCTCTGAAATTGCTCAATA TAACAGCAGATACAAAGGAGCAAGTGCAGCTTCTCCAAAAACAAGCAAAGAGGGTTGAGTTACTCATTGATCCAAGAGAG CTTCAAAGAAGAGAACAGCTTCTACAAGTAATGGCAAACAACAGTTTGCGGAACAAGAAGAACAAAGGGTTCATTGATTT TGGGAAAGTGGAAGATATATTAAGCAGCATTGGTTTGAGAACTCCATCAGATTATGATGGAGAAATATCCAATTTGGAGG TTGAAGCTCAGAATCAGGCCGGCACAGGAGGACTAATTGTTGTCTCCAATATAAACAATCTCATATCTCTAGTTTCTTAT TCCAAATCCATGATATTCAGAAACGGCGAAAATGATAGAGATGAAGAAGAGTGTAAGCCACTGTCTTTGATTTTATACAA CAAAAACCATGATAGTTCTTCATCTTCTATGTCCATTTCAGTGATACCAAACATTCCTGATGAATTCCGTTGCCCGATTT CACTTGATTTAATGAGGGACCCTGTGATTGTGTCATCCGGGCACACTTATGATCGAAATTCGATTGCACAATGGATAAAC ACAGGGCATCACACTTGCCCCAAGAGTGGTCAAAGGCTAATTCACACTGCTCTAATTCCAAACTATGCTTTAAAGAGCCT TGTTCAGCAATGGTGTTATGAGAACAATGTCCCGGTGAATGAGCCTATGAATTCTCTCTTAAACAACAGCAGAAGCAAGA AGAACTTGAAAGAGGAAGCTATTGATCATATTTCAGCAAACAAAGCAGCTTCAGATGCTGTTAAAATGACAGCAGAGTTT CTAGTTGGAAAATTGGCAACCGGCTCAGTTGATATCCAAAGACAAGCCGCGTATGAGCTTCGGTTACTCGCGAAATCCGG CACGAACAACCGAAGCATCATACCTGAGGCAGGTGCAATTCCCTTTCTTGTGACACTTCTAGCATCTCAAGACTCTAGAA CTCAGGAGCATGCAGTCACAGCCTTGTTCAACCTGTCCATCTTAGACAACAACAAGATTTTGATCATGGTAGCAGGAGCA GTTGACAACATAGTAGAAGTGCTAGAATCAGGAAAAACCATGGAGGCAAGAGAAAATGCTGCAGCAGCAATATACAGCTT GTCTATGGTTGATGATTGCAAAGTGCAAATTGGGGCATGTACAAGGGCAATACCTGCATTAGTTGCACTTTTGAAAGAAG GTACACCAATTGGGAAAAGAGATGCTGCTTCTGCAATTTTCAATCTTGCAGTTTACAATCCTAACAAATCAAGCATTGTT AAAGCTGGGGCAGTTCCTTTGTTAGTTGAGTTGTTGATGGATGATAAGGCTGGGATAACAGATGATGTGTTGGCTGTGCT TGCTGTGCTTCAAGGTTGCTCTGAAGGGCTTGAAGAGATAAGGGATAATAGAGCTTTGGTGCCACTTCTTATTGATCTTT TGAGATTTGGGTCAGTGAAAGGGAAGGAGAACTCAATAACTCTTCTGCTTGGGTTGTGCAAGGAAGAAGGGGAGCTAGTG GCGAGGCGTCTGTTGGCGAATCCAAGGAGTGTTCCTTCTCTTCAGAGCTTGGCTGCTGATGGTTCTTTGAGAGCTAGGAG AAAAGCAGATGCCCTGCTTCGGTTGCTCAATAGGTGCTGCTCTCAACCTCATCATTCTGTGTGA
Protein sequence (LotjaGi1g1v0075000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNDAVSAMMISSGLLPTGTLLDSLIHISNEVGSMEKLPLVHTRNVSSMIRRIKLLSSLFEEIQETDSPLPPSSILCFTEL YSVITRVKDLIQECKDGSTLWGLIQLELISNQFYVLAKELGRALDILPLKLLNITADTKEQVQLLQKQAKRVELLIDPRE LQRREQLLQVMANNSLRNKKNKGFIDFGKVEDILSSIGLRTPSDYDGEISNLEVEAQNQAGTGGLIVVSNINNLISLVSY SKSMIFRNGENDRDEEECKPLSLILYNKNHDSSSSSMSISVIPNIPDEFRCPISLDLMRDPVIVSSGHTYDRNSIAQWIN TGHHTCPKSGQRLIHTALIPNYALKSLVQQWCYENNVPVNEPMNSLLNNSRSKKNLKEEAIDHISANKAASDAVKMTAEF LVGKLATGSVDIQRQAAYELRLLAKSGTNNRSIIPEAGAIPFLVTLLASQDSRTQEHAVTALFNLSILDNNKILIMVAGA VDNIVEVLESGKTMEARENAAAAIYSLSMVDDCKVQIGACTRAIPALVALLKEGTPIGKRDAASAIFNLAVYNPNKSSIV KAGAVPLLVELLMDDKAGITDDVLAVLAVLQGCSEGLEEIRDNRALVPLLIDLLRFGSVKGKENSITLLLGLCKEEGELV ARRLLANPRSVPSLQSLAADGSLRARRKADALLRLLNRCCSQPHHSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 20 | 678 | 659 | 2.6E-163 | – | |
| PANTHER | 20 | 678 | 659 | 2.6E-163 | – | |
| SUPERFAMILY | 281 | 361 | 81 | 3.21E-31 | – | |
| Gene3D | 284 | 359 | 76 | 1.2E-29 | ||
| ProSiteProfiles | 284 | 358 | 75 | 39.153 | ||
| Pfam | 285 | 355 | 71 | 1.1E-21 | ||
| SMART | 288 | 351 | 64 | 2.8E-32 | ||
| CDD | 289 | 331 | 43 | 8.00805E-25 | – | |
| SUPERFAMILY | 398 | 676 | 279 | 1.19E-40 | ||
| Gene3D | 399 | 516 | 118 | 4.7E-22 | ||
| SMART | 427 | 467 | 41 | 9.3E-4 | ||
| Pfam | 429 | 466 | 38 | 5.4E-9 | ||
| ProSiteProfiles | 438 | 480 | 43 | 11.672 | ||
| SMART | 513 | 551 | 39 | 16.0 | ||
| Gene3D | 517 | 682 | 166 | 1.7E-18 | ||
| ProSiteProfiles | 522 | 564 | 43 | 9.432 | ||
| SMART | 552 | 592 | 41 | 5.5 | ||
| Pfam | 553 | 588 | 36 | 3.4E-4 | ||
| SMART | 593 | 634 | 42 | 68.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi1g1v0075000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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