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LotjaGi1g1v0124400.1

Overview

Field Value
Gene ID LotjaGi1g1v0124400
Transcript ID LotjaGi1g1v0124400.1
Lotus japonicus genome version Gifu v1.2
Description WD40 repeat-like protein; TAIR: AT1G15440.1 periodic tryptophan protein 2; Swiss-Prot: sp|Q15269|PWP2_HUMAN Periodic tryptophan protein 2 homolog; TrEMBL-Plants: tr|A0A0S3RH52|A0A0S3RH52_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0124400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:19712311..19718515) extracted from Lotus japonicus Gifu genome v1.2.

CATTCAGTTAGTTTTTTAACGTTTGACTGATGGAGGGGTAGACAGTGCACTCTTTGAAAACATGAGGGTAGAAACATCGA CAAAAATAAAATAGGGGCAGAATTTGCACAAACTTAAAACATCAGGGGCCAAAAGTGCTTTTTAACCAAAAAAAAAAAAA AAAAAAAAAAAAAAGTGACCTCCTGTATCACCATTGATTTTCATTAAGTAAAACTTTGCCGTTTACTTCCGACTTCGTGA ACCTAAACCCTAAATTGATAAACCCCATTCCCGCCACTCAGCAACCTGTTTCAGCCATGAACTTCCGATTCCAGAACCTC CTCGGAGCACCCTACAGAGGCGGCAACACCGTCATCTCCAACAACACCCTCCTCCTCTCACCCATCGGTAACCGCGTCTC CGTCACCGACCTCATCAAATCCGAAACCACAACGCTCCCTATCCAATCCTCCTCCAACATCTCCCGCATCGCCGTCTCCC CCGACGGCACCTTCCTCCTCACCGTCGACGACCGCAACCGCTGCCACTTCATCAACCTCCCCCGCCGCGCCCTCCTCCAC CGCATCTCCTTCAAACACCGCGTTGCCGCCGTACAATTCTCCCCTGACGGCAACCACATCGCCGTCGCCGCTGGTAAGCT TCTTCAGATCTGGCGCACCCCGGGTTTTAGCACCGAGTTTTCCGCCTTCGAGCTCTATCGAACCTTCGCCGATTTCGATA ACAAGATCACTTCCATCGATTGGTGCCCGCGTTCCGAATATTTGATCGTAGGTTCCAAGGACCTTACTGCGAGAATCCTG TGCAAGGAGAAGGTTAGGGATGTTGTGAAGTACAAAAAGCCTTTCTCGTTGTTAGGTCATAGGGATACCGTTGTTGCGGC GTTCTTCGGTGTTAATTCGAGAACCGATAGGGCTTGCAAGGCGTATACAGTTACTAGGGATTGCTATTTGTTTAGCTGGG GGTTTACTAGTGATGATGAGGAATCACCGCCGCCATCGCCCGGGACACCTGATAGGGATTTGGAAGGGGATTTAACGGTT GTGGACAATGGCGGCGTGAAGAAGAGGAAGGGGCCGGAAATTGGGGAGGAGGAGGAGGATGAAGGCTACTTGAGTAGAGG GAAGTGGGAGTTGTTGAGGAAGGATGGTTTTTCGCAGGGGCACGCGAAGGTGACGGCGTGTGATTATCATAGAGGGCTGG ACATGGTGGTTGTGGGATTCTCCAATGGTGTGTTTGGGTTGTATCAGATGCCGGAGTTCGTGTGCATTCACATGTTGTCT ATATCCAGGGAGAAGATCACCACTGCTGTTTTTAATAAGCTTGGAAACTGGTTGGCTTTTGGCTGTGCCAAGCTTGGCCA GCTCCTTGTGTGGGAGTGGCGGTCAGAGAGCTATATATTGAAGCAGCAGGGTCATTACTTTGATGTCAATTGTGTTGCGT ATTCACATGATTCTCAGCTCCTTGCTACAGGAGCAGATGATAATAAAGTGAAGGTAATTTTGAACATTAATCATCTTCCT TGCATTTGTTTTAAAATTGAATGGGTTTAAAGTGGATGCAAGTAAGAAATTTATGCTTGTCTGCTACAGGTGTGGACTGT TTCCTCAGGGTTTTGCTTTGTCACATTGACGGAGCACACCAATGCTGTTACGGCTCTGCATTTCACAGGAACTAACAATT GCCTGCTTAGTGCATCTCTTGACGGGACTGTTCGTGCATGGGATTTATTACGTTATCGCAATTTTAGGATATTTACAACC CCTTCATCAAGGCAGTTTGTTTCTTTGGCAGCAGATCAAAGTGGTGAGGTGGTATGTGCTGGCACTTCAGATTCCTTTGA GGTATGGTTTCGCATAACTTAGGTGGGTTCTGATTTTATCATTATTTTTCTTTAGTTTTACCCTTTTTGCTCGATGTATG TGTAACAGATTTTTGTCTGGTCAATGAGAACTGGTCGTTTGTTGGATGTGCTTAGTGGTCATGAAGCTCCTGTTCATGGA CTAATGTTTTCCCCTACAAACGTGAGTTAGTTTTAGTTTTTCTCGCACTGATATTCATCTGCATTTGTTACTGTCTTATC CTCTGTAGTACTTTATGTAGTTGCTTATTTTCTGTTGCTACACTGTCTACTTATTAGACATCTCCATGGAGCCTTGGTGT ATTATTTGCAATTTTATAGTCTAAGCCCTGAGTGTTCTCATGTATCATTAGAACTATTGTGTCAACACTCAAAAGATATG ACAATGAAGTGAACTTCTGAAGTTGGTATATTTTTGTGGTTTTTACACTTGCTACAATGAGAAATATAAGCTATTTCTTT CCTCTTTTTGCAGTCTGTCTTTGCTTCAATGAAGTGAACTTCTGAAGTTCGTATATTTTTAAGTTTTTTACACTCACTAC GATGAGAAACATAACAGTTTCTTTATACTCTTTTTGCAGGCTGTCTTGGCTTCATCATCCTGGGACAAAACCGTCCGGTT GTGGGATGTCTTTGATGGAAAAGGAGCAGTTGAAACATTTTCTCACACACATGATGTTCTAACAGTGGCTTATCGTCCAG ATGGAAGGCAGTTAGCTTGCAGCACATTAGATGGACAAATTTATTTTTGGGATCCAATAGATGGTATACTGATGTACACC ATAGAAGGTTCTAGGGATATTGCTGGAGGTCGCTTAATGTCTGATCGGAGATCAGCTGCCAACTCAAGTTCAGGGAAATT CTTCACAAGCTTGTGTTATTCAGCTGATGGAAGCTACATATTAGCTGGAGGAAGTAGCAGATATATCTGCATGTATGATA TTGCAGATCAGGTTGGCTTAGATGCGCTTCATATTTTTATCCTTATCATATGTTGAAATTCACATATTTAGAAATCTCAG CATATCAACTCTTAATTGATTCCCAAGAAAGTTACTTTCTAGAAAGCTTCTCCTTTATTGATCGCAAAACATGCTATATA TATTAGAGGTGCATGTAATGAGAAAAGCTTTCTTATATGAAAGTAAGTCAGTAAGAGGAGTAAATTTTGACCATTAGATT TAAGCATGAATGGTTAAGATTAAAACATTAAGTCATGTGTCTGTTTTTAAAAAGTCATGACATTTTCAAGTGATCATGTG ACCAATAAATAACTTTTAATCTTGACCATCCATGCATTTTATATGGTAAAAAATTACTCCTCCCTCCCTCAAATAAGGAA GCTTTTCTCATGAATGAAGAAAACGTATGTTCTTTTTGGCTATGTTCCTCCCCCTTATTCAGCTTGAGCTGTAGCTCTGC ATTCACTACAAAGTCTACAAGTTATTTTTCTTTTTTTTTGATGACCTTGGCCTTGTTTTGTAGTTTGAATTAGTGCATTT CTATTATTTAGGTGTCAACCCTAGGGCTACTTCTTTCCGACATCCAATATTCTATAAGATCTCCAAGTGTCACTGATTCT GTATACTTGGAAGGGTTCTTATTACTCCTTGAGTGGTTGGATAACTCTTATCCAAGCTTGCTTTTCCAATATCCCCCTAT TTTCATGCCTTTTCATATTATGAATGGTTTGGCGCAAAGGATAGAGAAGATGATGATGAACTTCCTTTAATCAGCTATAG GATATCTAAAAATTGACTATCATATTGGTTAGGATTTATGCTGTTCACTAAAAAATCACAGCGTGCATCTGGGTGTGTCT GTGGTGTAAATTATTGGCTGCTTAAATTTGGAATTTAGACGCATATTTAAAATGTACTGGTTTGTTCTACTTGTTTGCAT TTCGTAGTCCTGTTCTGTTTATTAGTTAATTGGAATATCTTTTTTATAGGTAATGCTGCGACGTTTCAAGATAACTCACA ATCTCTCATTAGATGGAGTGCTCGACTTTTTAAACTCTAAAAATATGACAGAAGCTGGTCCACTAGATTTGATTGATGAT GATAACAGTGACATTGAAGAAGGTGTTGAGAAACAAACACGAGGGAAATTAGGATTTGATTTACCAGGATCCTCGTCTAA TCATGGAAGACCTGTTATACAAACAAAATGCCTCAGAATTGCACCTACTGGGCGGAGTTTTGTAGCAGCAACTACTGAGG GAGTTTTGGTTTATTCTGTTGATGAATCATTCATATTTGATCCAACTGACATGGACATAGATGTTACGCCAGAGGTACTT ATGTTTTCTAAGTTCACAACTTTTTCATATTATATCTTGAAAGAATTATGGAATACTATTGTAAGATTATTGCATATACT ATTTTTCTGCAGGAAATACACCCTCGTTTCCTCTATTTTTAGTCACTTTTAACTATTCTCACTGATTAAATACATTAGTT AAGATTATCATTTAGTCTCAAATTTATCAAATTGTTTTTGTTAATTTTCCTAAATGATCCCTTATTGGCAAAAAAATATA AATCATTAGTATGAATATGGAGCATTAAATGTTAAGGATATACTTGGAAAAAAATATTTAACGCTTCATATATATCGTGA AGTGACTTATATTAAGGAACGTGTGCCTTATAAATAAGAACAAAGGGGGGTGATGATTTTGAAAACACTTGCGCCGAAAA TAAGGAATATAATAATTTGTCTTCCAATGATTTCTTTTGTTTGAATTGTTATGGTAAAAGATGACTTTTGCTTGTAAGAA GAGGAAGAGTTTTTTCTCTTCCTAGTGTAGGTTCTATCTCGCCATTAATATTTTTATTCATGACTTACAACATAAAATTT ATGAAAATAATGATTTAGTTTTTCAACATTCTCTGGGTAAAGAAGTGAAGAAAATTTCCAAGACATTGTTATCTGTATAA CCAACACGTGTAATGCTATATACTTTTTAGACTTCATTCTTCTTTCCTTTCAAATCATGAAAACAAAGAACCAAAATCAA AATTGAGAAGCTTGATATGCAGTGTCCATAATTTCAGTTTTGCTCCACCTAGTTGTATATGATGTTATTTGTTGTTGTGT TTACTCTTTTGATGTTGTTAATAACCTGGACGCGCATTGCTGCACAGGCTGTTGATAAGGCTCTTGATGAAAACCGACTA AGTGAGGCTTTGATCCTTAGCCTTCGCTTAAATGATGACTCTTTGATTAAAAAATGTATTTTTGCCGTTAGTCCAGCAGA TATTCCATCAATTGCCACATCAATCCCTCCCAGATATCTTCAGCGATTAATTGAGGCACTTGCAACACTTCTAGAAAACT CCCCGCATTTGGAATTTATACTTCGATGGTCTCAGGTGAGAGCTTGACAAGATTTTATTTTGACCACTCAATCATATATC AATTATTCAATATTACATTTAAGTAAAATACATGCTGACCATTCATGTGTGATTGTATGGTAACCATCACCTTTTTTTTT TTTAATATAATGTGCCTTTAAAATCTGAGTAGTCCTACAAAATGATATTTATGTTAAATATGGCAGGAGCTCTGTAAAGC CCATGGGGATTATATTCAGAATAACTCTAGAAATCTTCTCCCATCGTTGAAGTCTTGGCAGAAAGCAATCACTACAAATC ATCAGGATCTAGCTGATACGTGCTCTTCCAATGAATATATGCTGCAATATTTATGCTCTTCCCTTGCCAAGAAATGACAG TAACACAAGTTGGATTTTAGCAGCTTTGTTCTAGAAACCTCGTCACACTTGCGTATAATTTAAATATGACCTGCTGTCTG CTGAGCATCATAGCAACCTTTGAAGAATCAAGCAAGATTTTGATATACCTTAGCCACATTGCATACTCAGCCGTGTAGAG AGCATCCCAATGTATGTGAAGTAATATATCCTTGAATGAAGTTCCAATTTTTGTTCCTGTAAGGTGACTTCTTCAGGTTT GTTCATGGCCTAATTGCAGCTCCTGACCAAGAATCTTGCTAGTTACGCTCTACGCCTACGGTGACATTCTGTGTAAAGCA GTGGCTGAAGTTCCTGCTTGTAATTCAATTAAAAATGTTAGCGAGTCTTTTTGCCAAAATTTTGCCGAAAACAACACTTT ATTTCATCTAAGTTTTCGCCTTTTTTATAAGTGTCATGTCCTCATTTGTTTTATATGAAAAATTCGTTTGATATGTTATA AAATAGGAATTAATTTTATTTTAGAATCCTATTATATAACAATGTGTTGGTCTAGTGGAAGTAGTTGTAGGCAAGCTAGA TCTATAAGGCGTTGGGCACCTTTTATTGGTACCTGATAATTTGAT 

CDS sequence (LotjaGi1g1v0124400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAACTTCCGATTCCAGAACCTCCTCGGAGCACCCTACAGAGGCGGCAACACCGTCATCTCCAACAACACCCTCCTCCT CTCACCCATCGGTAACCGCGTCTCCGTCACCGACCTCATCAAATCCGAAACCACAACGCTCCCTATCCAATCCTCCTCCA ACATCTCCCGCATCGCCGTCTCCCCCGACGGCACCTTCCTCCTCACCGTCGACGACCGCAACCGCTGCCACTTCATCAAC CTCCCCCGCCGCGCCCTCCTCCACCGCATCTCCTTCAAACACCGCGTTGCCGCCGTACAATTCTCCCCTGACGGCAACCA CATCGCCGTCGCCGCTGGTAAGCTTCTTCAGATCTGGCGCACCCCGGGTTTTAGCACCGAGTTTTCCGCCTTCGAGCTCT ATCGAACCTTCGCCGATTTCGATAACAAGATCACTTCCATCGATTGGTGCCCGCGTTCCGAATATTTGATCGTAGGTTCC AAGGACCTTACTGCGAGAATCCTGTGCAAGGAGAAGGTTAGGGATGTTGTGAAGTACAAAAAGCCTTTCTCGTTGTTAGG TCATAGGGATACCGTTGTTGCGGCGTTCTTCGGTGTTAATTCGAGAACCGATAGGGCTTGCAAGGCGTATACAGTTACTA GGGATTGCTATTTGTTTAGCTGGGGGTTTACTAGTGATGATGAGGAATCACCGCCGCCATCGCCCGGGACACCTGATAGG GATTTGGAAGGGGATTTAACGGTTGTGGACAATGGCGGCGTGAAGAAGAGGAAGGGGCCGGAAATTGGGGAGGAGGAGGA GGATGAAGGCTACTTGAGTAGAGGGAAGTGGGAGTTGTTGAGGAAGGATGGTTTTTCGCAGGGGCACGCGAAGGTGACGG CGTGTGATTATCATAGAGGGCTGGACATGGTGGTTGTGGGATTCTCCAATGGTGTGTTTGGGTTGTATCAGATGCCGGAG TTCGTGTGCATTCACATGTTGTCTATATCCAGGGAGAAGATCACCACTGCTGTTTTTAATAAGCTTGGAAACTGGTTGGC TTTTGGCTGTGCCAAGCTTGGCCAGCTCCTTGTGTGGGAGTGGCGGTCAGAGAGCTATATATTGAAGCAGCAGGGTCATT ACTTTGATGTCAATTGTGTTGCGTATTCACATGATTCTCAGCTCCTTGCTACAGGAGCAGATGATAATAAAGTGAAGGTG TGGACTGTTTCCTCAGGGTTTTGCTTTGTCACATTGACGGAGCACACCAATGCTGTTACGGCTCTGCATTTCACAGGAAC TAACAATTGCCTGCTTAGTGCATCTCTTGACGGGACTGTTCGTGCATGGGATTTATTACGTTATCGCAATTTTAGGATAT TTACAACCCCTTCATCAAGGCAGTTTGTTTCTTTGGCAGCAGATCAAAGTGGTGAGGTGGTATGTGCTGGCACTTCAGAT TCCTTTGAGATTTTTGTCTGGTCAATGAGAACTGGTCGTTTGTTGGATGTGCTTAGTGGTCATGAAGCTCCTGTTCATGG ACTAATGTTTTCCCCTACAAACGCTGTCTTGGCTTCATCATCCTGGGACAAAACCGTCCGGTTGTGGGATGTCTTTGATG GAAAAGGAGCAGTTGAAACATTTTCTCACACACATGATGTTCTAACAGTGGCTTATCGTCCAGATGGAAGGCAGTTAGCT TGCAGCACATTAGATGGACAAATTTATTTTTGGGATCCAATAGATGGTATACTGATGTACACCATAGAAGGTTCTAGGGA TATTGCTGGAGGTCGCTTAATGTCTGATCGGAGATCAGCTGCCAACTCAAGTTCAGGGAAATTCTTCACAAGCTTGTGTT ATTCAGCTGATGGAAGCTACATATTAGCTGGAGGAAGTAGCAGATATATCTGCATGTATGATATTGCAGATCAGGTAATG CTGCGACGTTTCAAGATAACTCACAATCTCTCATTAGATGGAGTGCTCGACTTTTTAAACTCTAAAAATATGACAGAAGC TGGTCCACTAGATTTGATTGATGATGATAACAGTGACATTGAAGAAGGTGTTGAGAAACAAACACGAGGGAAATTAGGAT TTGATTTACCAGGATCCTCGTCTAATCATGGAAGACCTGTTATACAAACAAAATGCCTCAGAATTGCACCTACTGGGCGG AGTTTTGTAGCAGCAACTACTGAGGGAGTTTTGGTTTATTCTGTTGATGAATCATTCATATTTGATCCAACTGACATGGA CATAGATGTTACGCCAGAGGCTGTTGATAAGGCTCTTGATGAAAACCGACTAAGTGAGGCTTTGATCCTTAGCCTTCGCT TAAATGATGACTCTTTGATTAAAAAATGTATTTTTGCCGTTAGTCCAGCAGATATTCCATCAATTGCCACATCAATCCCT CCCAGATATCTTCAGCGATTAATTGAGGCACTTGCAACACTTCTAGAAAACTCCCCGCATTTGGAATTTATACTTCGATG GTCTCAGGAGCTCTGTAAAGCCCATGGGGATTATATTCAGAATAACTCTAGAAATCTTCTCCCATCGTTGAAGTCTTGGC AGAAAGCAATCACTACAAATCATCAGGATCTAGCTGATACGTGCTCTTCCAATGAATATATGCTGCAATATTTATGCTCT TCCCTTGCCAAGAAATGA 

Protein sequence (LotjaGi1g1v0124400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNFRFQNLLGAPYRGGNTVISNNTLLLSPIGNRVSVTDLIKSETTTLPIQSSSNISRIAVSPDGTFLLTVDDRNRCHFIN LPRRALLHRISFKHRVAAVQFSPDGNHIAVAAGKLLQIWRTPGFSTEFSAFELYRTFADFDNKITSIDWCPRSEYLIVGS KDLTARILCKEKVRDVVKYKKPFSLLGHRDTVVAAFFGVNSRTDRACKAYTVTRDCYLFSWGFTSDDEESPPPSPGTPDR DLEGDLTVVDNGGVKKRKGPEIGEEEEDEGYLSRGKWELLRKDGFSQGHAKVTACDYHRGLDMVVVGFSNGVFGLYQMPE FVCIHMLSISREKITTAVFNKLGNWLAFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCVAYSHDSQLLATGADDNKVKV WTVSSGFCFVTLTEHTNAVTALHFTGTNNCLLSASLDGTVRAWDLLRYRNFRIFTTPSSRQFVSLAADQSGEVVCAGTSD SFEIFVWSMRTGRLLDVLSGHEAPVHGLMFSPTNAVLASSSWDKTVRLWDVFDGKGAVETFSHTHDVLTVAYRPDGRQLA CSTLDGQIYFWDPIDGILMYTIEGSRDIAGGRLMSDRRSAANSSSGKFFTSLCYSADGSYILAGGSSRYICMYDIADQVM LRRFKITHNLSLDGVLDFLNSKNMTEAGPLDLIDDDNSDIEEGVEKQTRGKLGFDLPGSSSNHGRPVIQTKCLRIAPTGR SFVAATTEGVLVYSVDESFIFDPTDMDIDVTPEAVDKALDENRLSEALILSLRLNDDSLIKKCIFAVSPADIPSIATSIP PRYLQRLIEALATLLENSPHLEFILRWSQELCKAHGDYIQNNSRNLLPSLKSWQKAITTNHQDLADTCSSNEYMLQYLCS SLAKK 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 882 882 0.0
SUPERFAMILY 10 226 217 1.18E-20
Gene3D 32 249 218 2.5E-19
SMART 45 80 36 13.0
SMART 83 120 38 0.85
SMART 130 169 40 0.027
SUPERFAMILY 130 578 449 6.04E-65
MobiDBLite 226 247 22 -
Gene3D 275 459 185 3.7E-33
SMART 279 317 39 380.0
SMART 320 360 41 30.0
CDD 323 626 304 2.25302E-53
ProSiteProfiles 354 581 228 43.107
SMART 363 402 40 2.7E-7
ProSiteProfiles 370 411 42 13.951
Pfam 371 401 31 1.9E-7
PRINTS 389 403 15 1.5E-6
SMART 405 444 40 9.2E-8
Pfam 408 444 37 4.0E-4
ProSiteProfiles 412 445 34 13.783
ProSitePatterns 431 445 15 -
PRINTS 431 445 15 1.5E-6
SMART 447 488 42 370.0
SMART 491 530 40 4.6E-10
Pfam 493 530 38 4.6E-8
ProSiteProfiles 498 539 42 15.555
ProSitePatterns 517 531 15 -
PRINTS 517 531 15 1.5E-6
SMART 534 572 39 1.2E-5
ProSiteProfiles 540 572 33 11.879
SUPERFAMILY 542 735 194 4.58E-15
Pfam 544 572 29 0.013
SMART 595 634 40 0.95
Pfam 775 880 106 2.3E-26

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0124400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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