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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0130100 |
| Transcript ID | LotjaGi1g1v0130100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710; TrEMBL-Plants: tr|A0A151R3Y3|A0A151R3Y3_CAJCA Pentatricopeptide repeat-containing protein family; Found in the gene: LotjaGi1g1v0130100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:20898305..20900320) extracted from Lotus japonicus Gifu genome v1.2.
GTAAAGTGAAGTGAACCCTTGTTGCGAACTCTTGTTGGACCTTGTATTGAGCGCGGCTAGAAAGTTGCCGCAATCCAACC AAATGAAGCTCCTCCGTGATTCATTCACCGCCACCCTGAAAACCTTTCGCCACATGGTCCGAAACGGCGTGGTCTGCCGC TTCACCGCCGCTCGGAACTCAGAATCGATTCAGCAAGACTTGGCCACTTACAACAAGATTATTAAACAACATTGCTTGAT GCAGAGGGTTGAGAAGGGTGTTGGGATTTTGAGGGGTATGGCTGAGAAGGGTTTATCCCCTGATGCCCTTAGTTATAGAT ATGTTATAACCGGATTTTGCAATAACCGGTGCCCTGGGAAGGCGTATGAATTCAAGCTGGAGATGGATCAAAAGGGCATC TTACCTGATGCTTTCACGTATTCCTCGCTTATACAGGCCCTGTGCTCGAAACGAAGACTGTCCGAAGCTTATCATCTCTT CCAAGAGATGCTTTCGCCACCAGATGATATTACGTTTACTACATTGATGCATGCTTGTTGTCTTGAAGGTGAATTCAGTA AGGCTTTTCATATGCATCATCAGATGATACACAAGGGTGTTTTGCCTGATTTTGTTACTGGGTTTTCGCCGGCTCTTTTT ACATACAACGCGATTATTCACGGGCTTTGCTTTTTAGGGAGGGTTGAGGAGGCCCTGGGGATTTTGAGGGGCATGCCTGA GATGGGTTTGTCCCCTGACGCTGTTAGTTATATAATTGTTATATCCGGTTTTTGCCAAAACCGCGAGCTCAGGAAGGCAT ATGAATTGAAGGTGGAGATGGATCGAAAGGTTGTCTGGGGTTTGGATGAAGTCACGTATGCATATCTTATGCAAGGCCTG TCGGATGAGGATACTTATGCTAGTTTGATAAATGCTTATTGTGCTCAAGGTGAATTGTTTAAGGCTCTTACATTGAATGA TGAAATGTCACACAAGGGTTCTTTGCCAGATTCAGTTATCGAGAGCGTGCTTATTAATGGACTTGATAAGAAAGCTAGGA CAAAACATACTAAGGAGCACCTTCTGTTGACCATTGCTAATCATAAGTATACGTCTCTGCCAAATTATATAATATATGAT ACTCTCATAGAGAACTGCAGTAATAATGAATTCAAGAGTGTGGTAGGGCTTGTCAAAGGTTTCAGCATGAGGGGTTTAGT GAATGAAGCAGCCAGAGCTCATGACACAATGCTTGAGGGGAATTATAAGCCTGATGGAGCAGTTTATAATTTATTAATAT TTGATCATTGCAGAGGCCGTAATGTTCATAAGGCGTATAATATGTACAAGGAGATGGTCCGTTATGGTTTTGTTTCTCAT ATGTTCTCTGTACTTGCTCTTCTTACTGCTCTACTTGATCATGGAATGTACAATGAGAGGAGTTGGGTAATTCAAAACAC ATTGAGGAGCTGTAATCTCAATGATTCTGAGCTACATAAAGTACTTAATGAAATTGACACCAGGAAATTTCCTCTAATTG GTGCTGCTCTTTTGGATGTGCTAGCTGAAATAGCCATGGATGGCCTGTTACTTGATGGTAGAAAGTGTTCATATGCTTCA GCAAGTACCTAATATCTTTGGTTTTGCTTATTGAAATCTGTTACCATAAACCTTGAGCTGACTCTTCCAGCTTGCATCTA GCATGGTTTGGCTTGGAGACTTGCAATGGGAAGTTCTCACTTGCTAGGAAAGCAATTTATCATCTTTTACGTGGAACTCT ACAGCTATCAAAGACCTCCTTCTAGACCAGGTCTTTTAGATCTTTTTTTTTTTTTAAATTATTTTTTATAGTGTCAAGTA TGCTTTTTCCTCTTGTAACAAAAAATAAAATAAAATCATAAGTATGCTCATTTACTTTCAGGGTGTTGGCAGTCATGTTT TATGATTTTATGAATTTCAATAATTTTGAATGACGGTTACTGTCACATGAATGATAAAATTTGAATCTGTTCTCCCTAAA CTCCTAGGATCCCAAG
CDS sequence (LotjaGi1g1v0130100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTCCTCCGTGATTCATTCACCGCCACCCTGAAAACCTTTCGCCACATGGTCCGAAACGGCGTGGTCTGCCGCTT CACCGCCGCTCGGAACTCAGAATCGATTCAGCAAGACTTGGCCACTTACAACAAGATTATTAAACAACATTGCTTGATGC AGAGGGTTGAGAAGGGTGTTGGGATTTTGAGGGGTATGGCTGAGAAGGGTTTATCCCCTGATGCCCTTAGTTATAGATAT GTTATAACCGGATTTTGCAATAACCGGTGCCCTGGGAAGGCGTATGAATTCAAGCTGGAGATGGATCAAAAGGGCATCTT ACCTGATGCTTTCACGTATTCCTCGCTTATACAGGCCCTGTGCTCGAAACGAAGACTGTCCGAAGCTTATCATCTCTTCC AAGAGATGCTTTCGCCACCAGATGATATTACGTTTACTACATTGATGCATGCTTGTTGTCTTGAAGGTGAATTCAGTAAG GCTTTTCATATGCATCATCAGATGATACACAAGGGTGTTTTGCCTGATTTTGTTACTGGGTTTTCGCCGGCTCTTTTTAC ATACAACGCGATTATTCACGGGCTTTGCTTTTTAGGGAGGGTTGAGGAGGCCCTGGGGATTTTGAGGGGCATGCCTGAGA TGGGTTTGTCCCCTGACGCTGTTAGTTATATAATTGTTATATCCGGTTTTTGCCAAAACCGCGAGCTCAGGAAGGCATAT GAATTGAAGGTGGAGATGGATCGAAAGGTTGTCTGGGGTTTGGATGAAGTCACGTATGCATATCTTATGCAAGGCCTGTC GGATGAGGATACTTATGCTAGTTTGATAAATGCTTATTGTGCTCAAGGTGAATTGTTTAAGGCTCTTACATTGAATGATG AAATGTCACACAAGGGTTCTTTGCCAGATTCAGTTATCGAGAGCGTGCTTATTAATGGACTTGATAAGAAAGCTAGGACA AAACATACTAAGGAGCACCTTCTGTTGACCATTGCTAATCATAAGTATACGTCTCTGCCAAATTATATAATATATGATAC TCTCATAGAGAACTGCAGTAATAATGAATTCAAGAGTGTGGTAGGGCTTGTCAAAGGTTTCAGCATGAGGGGTTTAGTGA ATGAAGCAGCCAGAGCTCATGACACAATGCTTGAGGGGAATTATAAGCCTGATGGAGCAGTTTATAATTTATTAATATTT GATCATTGCAGAGGCCGTAATGTTCATAAGGCGTATAATATGTACAAGGAGATGGTCCGTTATGGTTTTGTTTCTCATAT GTTCTCTGTACTTGCTCTTCTTACTGCTCTACTTGATCATGGAATGTACAATGAGAGGAGTTGGGTAATTCAAAACACAT TGAGGAGCTGTAATCTCAATGATTCTGAGCTACATAAAGTACTTAATGAAATTGACACCAGGAAATTTCCTCTAATTGGT GCTGCTCTTTTGGATGTGCTAGCTGAAATAGCCATGGATGGCCTGTTACTTGATGGTAGAAAGTGTTCATATGCTTCAGC AAGTACCTAA
Protein sequence (LotjaGi1g1v0130100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLLRDSFTATLKTFRHMVRNGVVCRFTAARNSESIQQDLATYNKIIKQHCLMQRVEKGVGILRGMAEKGLSPDALSYRY VITGFCNNRCPGKAYEFKLEMDQKGILPDAFTYSSLIQALCSKRRLSEAYHLFQEMLSPPDDITFTTLMHACCLEGEFSK AFHMHHQMIHKGVLPDFVTGFSPALFTYNAIIHGLCFLGRVEEALGILRGMPEMGLSPDAVSYIIVISGFCQNRELRKAY ELKVEMDRKVVWGLDEVTYAYLMQGLSDEDTYASLINAYCAQGELFKALTLNDEMSHKGSLPDSVIESVLINGLDKKART KHTKEHLLLTIANHKYTSLPNYIIYDTLIENCSNNEFKSVVGLVKGFSMRGLVNEAARAHDTMLEGNYKPDGAVYNLLIF DHCRGRNVHKAYNMYKEMVRYGFVSHMFSVLALLTALLDHGMYNERSWVIQNTLRSCNLNDSELHKVLNEIDTRKFPLIG AALLDVLAEIAMDGLLLDGRKCSYASAST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 417 | 417 | - | – | |
| Gene3D | 3 | 102 | 100 | 1.3E-11 | ||
| PANTHER | 34 | 137 | 104 | 1.6E-73 | – | |
| Pfam | 39 | 87 | 49 | 2.5E-8 | ||
| ProSiteProfiles | 39 | 73 | 35 | 10.095 | ||
| TIGRFAM | 42 | 75 | 34 | 4.7E-5 | ||
| ProSiteProfiles | 74 | 108 | 35 | 9.46 | ||
| TIGRFAM | 77 | 110 | 34 | 2.5E-4 | ||
| PANTHER | 102 | 266 | 165 | 1.6E-73 | – | |
| Gene3D | 103 | 179 | 77 | 2.2E-21 | ||
| Pfam | 104 | 136 | 33 | 2.5E-10 | ||
| ProSiteProfiles | 109 | 139 | 31 | 10.556 | ||
| TIGRFAM | 111 | 138 | 28 | 7.0E-6 | ||
| Pfam | 140 | 168 | 29 | 5.9E-6 | ||
| ProSiteProfiles | 141 | 175 | 35 | 11.86 | ||
| TIGRFAM | 143 | 176 | 34 | 7.8E-9 | ||
| Gene3D | 180 | 266 | 87 | 7.2E-21 | ||
| ProSiteProfiles | 184 | 218 | 35 | 12.025 | ||
| Pfam | 185 | 232 | 48 | 5.0E-13 | ||
| TIGRFAM | 186 | 220 | 35 | 9.9E-8 | ||
| ProSiteProfiles | 219 | 249 | 31 | 8.857 | ||
| TIGRFAM | 221 | 248 | 28 | 5.4E-4 | ||
| Gene3D | 267 | 328 | 62 | 5.8E-9 | ||
| PANTHER | 267 | 455 | 189 | 1.6E-73 | – | |
| ProSiteProfiles | 268 | 302 | 35 | 10.994 | ||
| Pfam | 271 | 299 | 29 | 0.0038 | ||
| TIGRFAM | 271 | 303 | 33 | 1.2E-5 | ||
| Gene3D | 335 | 476 | 142 | 4.3E-13 | ||
| ProSiteProfiles | 356 | 390 | 35 | 7.202 | ||
| ProSiteProfiles | 391 | 425 | 35 | 9.81 | ||
| Pfam | 394 | 423 | 30 | 6.6E-4 | ||
| TIGRFAM | 394 | 424 | 31 | 5.5E-4 | ||
| Phobius | 418 | 438 | 21 | - | – | |
| Phobius | 439 | 509 | 71 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0130100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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