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LotjaGi1g1v0134500.1

Overview

Field Value
Gene ID LotjaGi1g1v0134500
Transcript ID LotjaGi1g1v0134500.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Serine hydroxymethyltransferase; TAIR: AT4G37930.1 serine transhydroxymethyltransferase 1; Swiss-Prot: sp|P34899|GLYM_PEA Serine hydroxymethyltransferase, mitochondrial; TrEMBL-Plants: tr|A0A0R4J2Q8|A0A0R4J2Q8_SOYBN Serine hydroxymethyltransferase; Found in the gene: LotjaGi1g1v0134500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:21670066..21677865) extracted from Lotus japonicus Gifu genome v1.2.

GGCACTAACCCCAATGAAGCCCACCACCCCAAGCATATTGTTGTCCTGCACACATTCCCATTTTGAGGACCCCACGCATC ACACCTAAAATACAAATCAAAATCACCACCAACCCCGACATCACCCACCCCCAAACACACTCACTCTCATCACTACCATC CCACCCATATATAGTCCCACCAATCTCGTACATTCCCCTATCACTCGCACTGTAAGAAAAGAAAACACCACCTCAATGGC CATGGCTCTCCGCCGACTCTCCTCCACCTTCACCAAACCAACCACCGCCTCTTCTGTTTACCGCATGTCCTCTTCCCTCC CCGCGCTCGACAATGACAAATCTCGCGCCGATGTAAATAAACCACTCTCCTTCGTTTCTTCCCTTCTCTAACCATTTCAT TTCATTGTTTCGCATCTGATTCTGATTTTTGAAATTTCGCAGTGGATAAAGCAGCTCAATGATCCTCTGGAAACCATAGA TCCTGAGATCGCTGACATAATCGAACTCGAGAAAGCTCGTCAATGGAAGGTGAGAATCGAGATTGGTTTTTCATTTCTTT CATTTTTTTCATCATGTTTGGTGTTTGTTTGTGAATGTTTTTCTATGTATGGATGTGTAGGGATTGGAACTTATACCTTC GGAGAATTTCACGTCGCTGTCGGTGATGCAAGCTGTTGGATCGGTGATGACGAATAAATACAGTGAAGGGTATCCTGGTG CTAGATACTATGGAGGAAATGAGTATGTTGATCTGATTTTGATTGTTCTGTTTCAAATTCAGACATTCATTGTAGTATAC ACCCTCCGGTCATATATATAAGCAAAAAACACTTTTTAGTTCATTCATTTAATGAATGTATCTAGTCATTAAAACAACTA GATACATTCATTAAATGAATGAACCTAAAAAGTGTTTTTTTGCTTATATATGTGACCAGAGGGTGTAGGTTGATGCAGGG TTTTGATTTGTGGTTAGGACATGATCCTTAAATGTTATTGAAAATTTGGGATAAATGTTGTTAATGCAACTGCAATTGCG GTTGGAGACCATTAAATCTTTGATGTGGTGGTCACAGTTGTTGTTGCTGATAATAATTTAAAACCCCATTTGATGTGTTG ATTTTGTGTAATCAATTCAGGTACATTGACATGGCCGAGACCTTGTGTCAGAAGCGTGCACTTGAAGCTTTTGGGTTGGA TCCAGCAAAATGGGGAGGTACATAAGTGCAAAGGCATTTATTTTGAGTTTCTTTATTTTGATAAAGAGTGGGGCCTTCTG TGTGTCAAGGCATCATGCCAAAGAAATTTGGAACATTATGATTTTTATTTGTTCAGTTCTTTTTTTATGGTTCAAAATCA AAATTTTGGCTACTTGCTTGCAAACCACAAAGGATTGCCAATATACTATAGTGTATAGGAGATCTATTAGGTTATTAGTG GTTTTATAATTTTATACTGCTCTGATTGTTAATCATGGATTCAAGCTACTTGATTCCATTCCAAGCATTTACTAGTATAT TTGTTTCTGAAGGAGAGTATGTTTGGTAGACGTGTTGGCAGGAGACCACTGGATTTGTGGTTCTATACTATTGTTGGTGC TTTTTTAAAATATAACAAAGCATGATATGGGATAAATTTTTTTATCATATCTTGGCTGTACTGAAAGGGTGGGAGCAAGG AGAACCAAACAAAACTTTTCTGTTTTACTTCATTTTGCCCATATGTCAAATGCTATCAAAATGCATTTCCTAACCTAAAC TACTAATCATTCACTGGGTTCAAATGAACATTTTAAGTGATTTGAGTTTCATTGCTGGTAAAATAAACGTCTATTTTAGA GCGAAATAATCCATTGATGTTTTGTTCTTTGCATTTTTTTGTTTATTTCCGTCAAATACTTTTTTTTTTGCTTTTTGGTT TAAAATTCTCAATATTGTTCATGGGTTATGTTAGGAAAAAAATGATTGCTCAGTATTTCAGTTTCTGGTCAAACCAAAGT AATTATTTATTTTACTTCTAAGTTCTAACAGCATAAGCTGCAAACTAAATTAACTTTCTGGCCCCTGATACGGTGCAAAT CTGAATTTCAAAATTCAATAATTTGTACTGTAAAGCTGGGTAAAAGTCAGTTCTTATTCTTTTTACTCATGAATGAGAAT AGCATATGTTTTTAGTTCATTGTTGTCCACATTAGCATTTATTTTTAGGGTGAATGCTTATCACCTCCTCTTTTATGGCG ATTGAGGAGAATCTTATCTTCTCATAACCTACCTACTAATCACTTATTTTGAGTCACTAAGACCTTGCCACAATGGTTTC TCTCATATTGATTCCCTTGTGTAATCGTCACCTTTTATATCTGATTTTGTAGTTATTTGTTTATCAAGTGAAAATCCTTG TTAACTTTTGAAGTTATTGAATGATTGTCTTAATACATACCTGATTTACGTTCTGAAATAAAAATAATATCTAAAGTCGT ATTTGTTTGTGGGAGTAATTTACTTATATAACTGGAGTATTTAATGTTCTCCTGCTTTTGATGCATACTATTTCAGCATA CATGTTGTCTAGTGGATAAGTACTTTGTTATTCTTTTGATGAACTCATGTTATTCTTTGGATGATTTATCTGTCTTTTTA TTTTCCTCTGCAAGTTAGAGGAACATAATTCTGATCATGTGAATTTTGGAGTCTTACATACTCTGCCTTTAACAGTCAAT GTGCAGTCGTTGTCTGGTTCCCCTTCTAACTTCCAAGTTTACACTGCTTTATTGAAACCTCATGAAAGAATTATGGCACT CGATCTTCCCCATGGTGGGCATCTATCACATGGCTATCAGGTTAAGTTCTGCTTCTAAATATCACTTGTGGTCATTGCAC CTTCTGCCATGAGTTGAGAATCATATCAAGTCTACATTAGGACATGATGGATGCATGTTGTTGAAATAGCTCATACTAGT TTTTTTTGTTTTGGCTTAATAAGTACCTGTTTGGTTTTCTTTTTTGTTTAATTTCCTGTTTTCAGTTTTAATTACAAAGT GCTGCATTGTTTTCTGTGTAAAACTTTGAAACAGAAAATGAAGTGATCAATATATGGCCTTTAGTTTTTTTATTCTTTTT GATAAGAGCATAATTTATTTAGACTGTTAAAGAATGTATTTATTAAGAGCAGCTTGATCCCTTTTGCATGTCTTACCTAG GAGCACCCTTAAGCAACCTATGAGCAGAATCTTACATGGAAGCTAAGAGTCTTTTTGGTTTTCTGTTTCTGTTTCCTGTT TTCACTTCTAATTATAAAAAGACCACATTATTTTTTTTTCACTATTTTCTCATAAATATATCCAAATATAAATCACCTCA CTTTTAACTCAATTTCACTACAATCAATTTTACCAAAATCAATTCTGACAACACTGGTCCAAATTCAGATTAGTATTGTC TGGGAAACTTCAACTATTATGTTCCAAATGATGTCATTCTTGATACTTTAATTTAACACAAATTGTTTAATTTGTATCAT TTTGATATTCGCTTACTGAAACTTTTAGGACCATGTGCCACATATTTTGAATGCAAATTTTCATTTGTATGTTTGTGCCA TGCAGACTGACACCAAGAAGATATCAGCTGTATCGATATTCTTTGAAACAATGCCGTACAGATTGAATGAGACTACTGGT TATATTGATTATGACCAGGTAGGTAGGTACCCAAATTGTGTTTTTTCATTGTTAGGGAGACTCCTTTTTTTTTTTTTTTG CAGAAACACAAGTTTTAATTAGATACCAAATTGGACTATTTTCTTTGTATGAGTTTTCAGTGCAGAATTTTAATCATTAT TTTACCAGATGAAAAAAGATTCAGTGTTCTGGGCATCATTTAGAATTATCTGTTCTTATCCCAATACATGCGTGTTCAGA TAAATTTAATCATTTTATGCTCATGTTCAAAATATATTGTCCTTTTAGTATTTGATTGTGATAGGAACCGAATTATTGTG ATAGAATGTTTATACAACTCTGGTTTTCGAGAGCCAGCCTCTCCTAATTCTGGAATTTGAGAGTCCAGACCTCTCCCACC ATAACACCCAACTTCTGAATAATCCCAACTATCTTACATAACTCCTATTTATAACCACTCCTATATGATTTAAATTCAAA CCATAGCAGTTACCTAACTGCTTTAATCATAAAATTACCCAACTAATAAATTAAATAATAATAACTTCCTAACTGCTACT GTTCACGAGTACTGTTCATGCAGTTCCCTATCAGATTGCCACTTCATCATTTGGCTATGTATTTTTTTATCATTACATAA GTTTTCCTTGCAACTTGGGGAAAAAAACTTTTTTTCTGAACACGGGAGGCATTGTATTTGCACTTTCTCACAAAGGTTAT GCTTTTTTGTGCATACTGTGGGCTTAGACTTATATATCATGGCCTGACATATTTAATATCTGCAGATGGAGAAAAGTGCT GCACTTTTTAGGCCAAAGTTAATTGTCGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGAACGTATTCGTAAGGT AAACTACATCTGATTATAGAAAACTTAGATATTTGATGTTTAGAACAACTGAGCGATGATATTGTATCTTTTACACTTGA ATTTGTATAGGTCTGTGATAAACAGAAGGCAGTAATGTTGGCTGATATGGCACACATCAGTGGGTTGGTTGCTGCAGGTG TTATTCCTTCTCCTTTTGATTATGCAGATGTTGTAACAACCACAACACATAAGTCACTTCGTGGACCACGTGGGGCTATG ATCTTCTTCAGGAAGGGTGTGAAGGAAATAAACAAGAAAGGGCAGGAAGTGAGTTGAAGATTTTAAAGTTAATGTTATAA GGAAAAATTAATTACAAAGTAGGGAAAACACATGTGATCCCATCCCCCCTTAAGTAGGGAAAAGTTAATGTTAATACCAT TCTTGATTTCAGTCATCGGAAAATGTTCAATCATGCAAACTTTTATGATCTAGATGCTTGGGTGTGAAAGGTCTGTGTTA TGATCCCACACCGGGCTGGGCATATGGGCAAAGTACACCCAAAAAGAAAAAAGTTTGGCTTTATGGTTTAGTTTGGTCCA ATCTGTTCTTAATTCTAACAATTTCAAAGTTAGCTTACTTGAAAAAAATTCATTGGCTGAATTCCATCTGGCAGGTGTTG TATGACTACGAAGACAAAATAAATCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCTCACAATCACACTATTACAGGCTT GGCAGTTGCACTGAAGCAGGTTTTTTTAATAGACTAGCCAAAGAAACTATAGTCATTACTCCTGGAAAATATGTACTTCT GTATAAAAGCAAAATGGTCATTCTTGTGCATATTTTTTTGCTAGGCTGATGTAAATTCATTTCTTTCTTTATTTATGTTA ATGTAGGCTATGACGCCAGAATTCAAGAATTACCAAAAACAAGTGCTTAGTAACTCCTCGGCTTTTGCACAGGTAAAGTG AATGTCTTTTTAAGTATGCACACCAGTGCGGTAAAAACTATTACAATCTAGTTAATGGAATATCTTCCATTGACTGTTGA GCCTGAGAGATTTGACTGTTTTAGCTGACTATGCTATGTTGATTGAATTCCAGAGTTTGATAGAGAAAGGCTATGAACTT GTATCTGGTGGAACTGAAAACCATTTAGTGTTGGTGAACTTAAGAAACAAGGTAAAAAGTGTGGTCCTTTCCTTCTTGGT CATATTTTCATCTGAAAAAATAAATCTGGGTAGTGCCATTTTGTTGATACACGCATGTAAATAAACCTGTTCAGAACAAT CTTTCTATACTTACATTGAGTGAATGTAAAATCAGCTGTATGGTAAAAGTTGGCTTCAAAAGATATCTACTGTGTGAAGC CTTCTCCTTAAATATTTTAGGAGGCAACAGGGAATAGCAACACAGAAATGCATGAGTAGGTTGTTTTTATTGAGAATAGA ATCACTAAAGGATAAGTTTTTCTCTTTAAACAGAAAATAAGAACCCTTTAGATATTGATGAACTTCATATGATAGTGACC CTACCTTATTCCTAGACAAGTTCTTAGAAATTGGTATTGACATTTTAGTTATTATTTTACCTACCCAAACTACTAGAAAA CTTTCAATCCTTCGAAAACTGTTTTCTTCTTGTGTTATTACAGAAGAGCCTTCAAACAAATCAGAAACTTCCCCAATGTT TGTGCAATGTGCAAGTTATGTTTAAGGGATGTTCCAGGATTAAGATTAGGGAGTTTAGGCATTTATTTGGTAGCCCTATA TTGTAAAAGCTGTAAATATTTTATTGGGTTTGATTTGACATTTATACTTAGTAGCATCGAGGGGCAAGCACTTTCTAATG CTGTGCCATTTGACAGGGCATCGATGGCTCAAGGGTTGAAAAGGTGTTAGAATCAGTTCATATAGCTGCCAATAAAAATA CTGTTCCGGGGGATGTGTCTGCTATGATTCCCGGAGGCATCCGAATGGGTAATGTCTCTCTCAGTCATCTATTTTTCATG TTTGTTGGTAAATCTATAACTACATGTTAATGAAAGTTATCTTGTCATGATTCAGGAACCCCTGCTCTCACATCCAGGGG TTTCATTGAGGAGGATTTTAGAAAAGTAGCTGAATACTTTGACGCTGCAGTCAAGATAGCCTTGCAGATTAAGGGAAACG CTAAAGGTTAACCCTACCATCCTGCATATTTGTTATGTCATGATATTTGCAGATTTGAAAGCATAGTAAGGTATCTTGGC CTTCCTGTATGCTAAGCTCACTCCTGTTATACTCCTGTTATACATTATGTTCAGGTACAAAGTTGAAGGATTTTGTGGAA GCTATGCAGTTGGATGAAGAAATTCAATCTAAGATTGCTAAGGTCCGTCATGAAGTAGAGGATTATGCTAAGCAGTTCCC CACAATTGGTTTTGAGAAAGAGACAATGAAGTATAGCTCGTGAAGATGACATATGGAACTTCTATTTGATTTTTTTGGAG GTTTCTGGAATAATAACTCGGGAGTTTGGGAGTTTGATATGCTGCTGAATAGATTTGTACCCTAGTCTTGCATGAAAATG AGAATTGTATTACCAATGATTAAGTGAAAGATAAAAAGGAAGAAATTTCCTTCCGATGATAGACCATTTATAGGGTTATG TTGCCTATTAAAAAATTTTTTTATAGGGTTATGCAATTTCTTTCAAACTTGAGAAAAGATATTGATTTAAAATGGAAACT ATCTTTTGATTGTGTAGAAAAAATGAGGTTGAGCATTAGTGGAATTTGCTATTTGCATTTGTATTAGCCTTTGAATCAAT GAGCCCCCCTCTCCTCTCTTCAATATACATATCCCCTCCAAAAACTACATTACCCTCTAATGCTCCATTACTAGAGTTTT GGGTCACTCTGCACGAGTGTGGTATTATGATCTTGGAAAATGTTTCATTAACACTTCATTTGCACTTACACAAGTTCGAA AAGGATAGAGAAGATAGAGAAATAAAAAGTGATGTGATAGAATAAGTCGAGAGTGAGTAGAAATGAGATGGAAGAGAAAG AGAGATGTTGATGCATCAAAGTTCTATGATCTTAATAAGTTTACATTGACACTCATATTTCACTTTTACTCTAGATAGAA AAGAAGAAAGAGAGAAAAATGACATATATGATAGGTAATATGATAGGAAATGAAGAGACATAGGAAAAGAAAGGGAATGA AAATGAGATGGAAAAGAAAAATAAGATCAATATGTTCACA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0134500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCATGGCTCTCCGCCGACTCTCCTCCACCTTCACCAAACCAACCACCGCCTCTTCTGTTTACCGCATGTCCTCTTC CCTCCCCGCGCTCGACAATGACAAATCTCGCGCCGATTGGATAAAGCAGCTCAATGATCCTCTGGAAACCATAGATCCTG AGATCGCTGACATAATCGAACTCGAGAAAGCTCGTCAATGGAAGGGATTGGAACTTATACCTTCGGAGAATTTCACGTCG CTGTCGGTGATGCAAGCTGTTGGATCGGTGATGACGAATAAATACAGTGAAGGGTATCCTGGTGCTAGATACTATGGAGG AAATGAGTACATTGACATGGCCGAGACCTTGTGTCAGAAGCGTGCACTTGAAGCTTTTGGGTTGGATCCAGCAAAATGGG GAGTCAATGTGCAGTCGTTGTCTGGTTCCCCTTCTAACTTCCAAGTTTACACTGCTTTATTGAAACCTCATGAAAGAATT ATGGCACTCGATCTTCCCCATGGTGGGCATCTATCACATGGCTATCAGACTGACACCAAGAAGATATCAGCTGTATCGAT ATTCTTTGAAACAATGCCGTACAGATTGAATGAGACTACTGGTTATATTGATTATGACCAGATGGAGAAAAGTGCTGCAC TTTTTAGGCCAAAGTTAATTGTCGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGAACGTATTCGTAAGGTCTGT GATAAACAGAAGGCAGTAATGTTGGCTGATATGGCACACATCAGTGGGTTGGTTGCTGCAGGTGTTATTCCTTCTCCTTT TGATTATGCAGATGTTGTAACAACCACAACACATAAGTCACTTCGTGGACCACGTGGGGCTATGATCTTCTTCAGGAAGG GTGTGAAGGAAATAAACAAGAAAGGGCAGGAAGTGTTGTATGACTACGAAGACAAAATAAATCAGGCTGTTTTTCCTGGA CTTCAAGGTGGTCCTCACAATCACACTATTACAGGCTTGGCAGTTGCACTGAAGCAGGCTATGACGCCAGAATTCAAGAA TTACCAAAAACAAGTGCTTAGTAACTCCTCGGCTTTTGCACAGAGTTTGATAGAGAAAGGCTATGAACTTGTATCTGGTG GAACTGAAAACCATTTAGTGTTGGTGAACTTAAGAAACAAGGGCATCGATGGCTCAAGGGTTGAAAAGGTGTTAGAATCA GTTCATATAGCTGCCAATAAAAATACTGTTCCGGGGGATGTGTCTGCTATGATTCCCGGAGGCATCCGAATGGGAACCCC TGCTCTCACATCCAGGGGTTTCATTGAGGAGGATTTTAGAAAAGTAGCTGAATACTTTGACGCTGCAGTCAAGATAGCCT TGCAGATTAAGGGAAACGCTAAAGGTACAAAGTTGAAGGATTTTGTGGAAGCTATGCAGTTGGATGAAGAAATTCAATCT AAGATTGCTAAGGTCCGTCATGAAGTAGAGGATTATGCTAAGCAGTTCCCCACAATTGGTTTTGAGAAAGAGACAATGAA GTATAGCTCGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0134500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAMALRRLSSTFTKPTTASSVYRMSSSLPALDNDKSRADWIKQLNDPLETIDPEIADIIELEKARQWKGLELIPSENFTS LSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFGLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERI MALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNETTGYIDYDQMEKSAALFRPKLIVAGASAYARLYDYERIRKVC DKQKAVMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKKGQEVLYDYEDKINQAVFPG LQGGPHNHTITGLAVALKQAMTPEFKNYQKQVLSNSSAFAQSLIEKGYELVSGGTENHLVLVNLRNKGIDGSRVEKVLES VHIAANKNTVPGDVSAMIPGGIRMGTPALTSRGFIEEDFRKVAEYFDAAVKIALQIKGNAKGTKLKDFVEAMQLDEEIQS KIAKVRHEVEDYAKQFPTIGFEKETMKYSS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_GRAM_POSITIVE
SignalP-TM
1 18 18 - –
PANTHER
PTHR11680:SF37
16 509 494 0.0 –
PANTHER
PTHR11680
16 509 494 0.0
IPR001085
PIRSF
PIRSF000412
31 505 475 5.4E-170
IPR001085
SUPERFAMILY
SSF53383
37 501 465 6.2E-181
IPR015424
Hamap
MF_00051
47 500 454 43.041
IPR001085
Pfam
PF00464
48 445 398 7.4E-210
IPR039429
Gene3D
G3DSA:3.90.1150.10
52 497 446 6.9E-220
IPR015422
CDD
cd00378
52 472 421 0.0
IPR001085
Gene3D
G3DSA:3.40.640.10
77 350 274 6.9E-220
IPR015421
ProSitePatterns
PS00096
271 287 17 -
IPR019798

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004372
Molecular function Glycine hydroxymethyltransferase activity Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine.
Subterm of
GO:0019264
Biological process Glycine biosynthetic process from serine The chemical reactions and pathways resulting in the formation of glycine from other compounds, including serine.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of
GO:0035999
Biological process Tetrahydrofolate interconversion The chemical reactions and pathways by which one-carbon (C1) units are transferred between tetrahydrofolate molecules, to synthesise other tetrahydrofolate molecules.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0134500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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