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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0134500 |
| Transcript ID | LotjaGi1g1v0134500.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine hydroxymethyltransferase; TAIR: AT4G37930.1 serine transhydroxymethyltransferase 1; Swiss-Prot: sp|P34899|GLYM_PEA Serine hydroxymethyltransferase, mitochondrial; TrEMBL-Plants: tr|A0A0R4J2Q8|A0A0R4J2Q8_SOYBN Serine hydroxymethyltransferase; Found in the gene: LotjaGi1g1v0134500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:21670863..21677636) extracted from Lotus japonicus Gifu genome v1.2.
ACCTCAATGGCCATGGCTCTCCGCCGACTCTCCTCCACCTTCACCAAACCAACCACCGCCTCTTCTGTTTACCGCATGTC CTCTTCCCTCCCCGCGCTCGACAATGACAAATCTCGCGCCGATGTAAATAAACCACTCTCCTTCGTTTCTTCCCTTCTCT AACCATTTCATTTCATTGTTTCGCATCTGATTCTGATTTTTGAAATTTCGCAGTGGATAAAGCAGCTCAATGATCCTCTG GAAACCATAGATCCTGAGATCGCTGACATAATCGAACTCGAGAAAGCTCGTCAATGGAAGGTGAGAATCGAGATTGGTTT TTCATTTCTTTCATTTTTTTCATCATGTTTGGTGTTTGTTTGTGAATGTTTTTCTATGTATGGATGTGTAGGGATTGGAA CTTATACCTTCGGAGAATTTCACGTCGCTGTCGGTGATGCAAGCTGTTGGATCGGTGATGACGAATAAATACAGTGAAGG GTATCCTGGTGCTAGATACTATGGAGGAAATGAGTATGTTGATCTGATTTTGATTGTTCTGTTTCAAATTCAGACATTCA TTGTAGTATACACCCTCCGGTCATATATATAAGCAAAAAACACTTTTTAGTTCATTCATTTAATGAATGTATCTAGTCAT TAAAACAACTAGATACATTCATTAAATGAATGAACCTAAAAAGTGTTTTTTTGCTTATATATGTGACCAGAGGGTGTAGG TTGATGCAGGGTTTTGATTTGTGGTTAGGACATGATCCTTAAATGTTATTGAAAATTTGGGATAAATGTTGTTAATGCAA CTGCAATTGCGGTTGGAGACCATTAAATCTTTGATGTGGTGGTCACAGTTGTTGTTGCTGATAATAATTTAAAACCCCAT TTGATGTGTTGATTTTGTGTAATCAATTCAGGTACATTGACATGGCCGAGACCTTGTGTCAGAAGCGTGCACTTGAAGCT TTTGGGTTGGATCCAGCAAAATGGGGAGGTACATAAGTGCAAAGGCATTTATTTTGAGTTTCTTTATTTTGATAAAGAGT GGGGCCTTCTGTGTGTCAAGGCATCATGCCAAAGAAATTTGGAACATTATGATTTTTATTTGTTCAGTTCTTTTTTTATG GTTCAAAATCAAAATTTTGGCTACTTGCTTGCAAACCACAAAGGATTGCCAATATACTATAGTGTATAGGAGATCTATTA GGTTATTAGTGGTTTTATAATTTTATACTGCTCTGATTGTTAATCATGGATTCAAGCTACTTGATTCCATTCCAAGCATT TACTAGTATATTTGTTTCTGAAGGAGAGTATGTTTGGTAGACGTGTTGGCAGGAGACCACTGGATTTGTGGTTCTATACT ATTGTTGGTGCTTTTTTAAAATATAACAAAGCATGATATGGGATAAATTTTTTTATCATATCTTGGCTGTACTGAAAGGG TGGGAGCAAGGAGAACCAAACAAAACTTTTCTGTTTTACTTCATTTTGCCCATATGTCAAATGCTATCAAAATGCATTTC CTAACCTAAACTACTAATCATTCACTGGGTTCAAATGAACATTTTAAGTGATTTGAGTTTCATTGCTGGTAAAATAAACG TCTATTTTAGAGCGAAATAATCCATTGATGTTTTGTTCTTTGCATTTTTTTGTTTATTTCCGTCAAATACTTTTTTTTTT GCTTTTTGGTTTAAAATTCTCAATATTGTTCATGGGTTATGTTAGGAAAAAAATGATTGCTCAGTATTTCAGTTTCTGGT CAAACCAAAGTAATTATTTATTTTACTTCTAAGTTCTAACAGCATAAGCTGCAAACTAAATTAACTTTCTGGCCCCTGAT ACGGTGCAAATCTGAATTTCAAAATTCAATAATTTGTACTGTAAAGCTGGGTAAAAGTCAGTTCTTATTCTTTTTACTCA TGAATGAGAATAGCATATGTTTTTAGTTCATTGTTGTCCACATTAGCATTTATTTTTAGGGTGAATGCTTATCACCTCCT CTTTTATGGCGATTGAGGAGAATCTTATCTTCTCATAACCTACCTACTAATCACTTATTTTGAGTCACTAAGACCTTGCC ACAATGGTTTCTCTCATATTGATTCCCTTGTGTAATCGTCACCTTTTATATCTGATTTTGTAGTTATTTGTTTATCAAGT GAAAATCCTTGTTAACTTTTGAAGTTATTGAATGATTGTCTTAATACATACCTGATTTACGTTCTGAAATAAAAATAATA TCTAAAGTCGTATTTGTTTGTGGGAGTAATTTACTTATATAACTGGAGTATTTAATGTTCTCCTGCTTTTGATGCATACT ATTTCAGCATACATGTTGTCTAGTGGATAAGTACTTTGTTATTCTTTTGATGAACTCATGTTATTCTTTGGATGATTTAT CTGTCTTTTTATTTTCCTCTGCAAGTTAGAGGAACATAATTCTGATCATGTGAATTTTGGAGTCTTACATACTCTGCCTT TAACAGTCAATGTGCAGTCGTTGTCTGGTTCCCCTTCTAACTTCCAAGTTTACACTGCTTTATTGAAACCTCATGAAAGA ATTATGGCACTCGATCTTCCCCATGGTGGGCATCTATCACATGGCTATCAGGTTAAGTTCTGCTTCTAAATATCACTTGT GGTCATTGCACCTTCTGCCATGAGTTGAGAATCATATCAAGTCTACATTAGGACATGATGGATGCATGTTGTTGAAATAG CTCATACTAGTTTTTTTTGTTTTGGCTTAATAAGTACCTGTTTGGTTTTCTTTTTTGTTTAATTTCCTGTTTTCAGTTTT AATTACAAAGTGCTGCATTGTTTTCTGTGTAAAACTTTGAAACAGAAAATGAAGTGATCAATATATGGCCTTTAGTTTTT TTATTCTTTTTGATAAGAGCATAATTTATTTAGACTGTTAAAGAATGTATTTATTAAGAGCAGCTTGATCCCTTTTGCAT GTCTTACCTAGGAGCACCCTTAAGCAACCTATGAGCAGAATCTTACATGGAAGCTAAGAGTCTTTTTGGTTTTCTGTTTC TGTTTCCTGTTTTCACTTCTAATTATAAAAAGACCACATTATTTTTTTTTCACTATTTTCTCATAAATATATCCAAATAT AAATCACCTCACTTTTAACTCAATTTCACTACAATCAATTTTACCAAAATCAATTCTGACAACACTGGTCCAAATTCAGA TTAGTATTGTCTGGGAAACTTCAACTATTATGTTCCAAATGATGTCATTCTTGATACTTTAATTTAACACAAATTGTTTA ATTTGTATCATTTTGATATTCGCTTACTGAAACTTTTAGGACCATGTGCCACATATTTTGAATGCAAATTTTCATTTGTA TGTTTGTGCCATGCAGACTGACACCAAGAAGATATCAGCTGTATCGATATTCTTTGAAACAATGCCGTACAGATTGAATG AGACTACTGGTTATATTGATTATGACCAGGTAGGTAGGTACCCAAATTGTGTTTTTTCATTGTTAGGGAGACTCCTTTTT TTTTTTTTTTGCAGAAACACAAGTTTTAATTAGATACCAAATTGGACTATTTTCTTTGTATGAGTTTTCAGTGCAGAATT TTAATCATTATTTTACCAGATGAAAAAAGATTCAGTGTTCTGGGCATCATTTAGAATTATCTGTTCTTATCCCAATACAT GCGTGTTCAGATAAATTTAATCATTTTATGCTCATGTTCAAAATATATTGTCCTTTTAGTATTTGATTGTGATAGGAACC GAATTATTGTGATAGAATGTTTATACAACTCTGGTTTTCGAGAGCCAGCCTCTCCTAATTCTGGAATTTGAGAGTCCAGA CCTCTCCCACCATAACACCCAACTTCTGAATAATCCCAACTATCTTACATAACTCCTATTTATAACCACTCCTATATGAT TTAAATTCAAACCATAGCAGTTACCTAACTGCTTTAATCATAAAATTACCCAACTAATAAATTAAATAATAATAACTTCC TAACTGCTACTGTTCACGAGTACTGTTCATGCAGTTCCCTATCAGATTGCCACTTCATCATTTGGCTATGTATTTTTTTA TCATTACATAAGTTTTCCTTGCAACTTGGGGAAAAAAACTTTTTTTCTGAACACGGGAGGCATTGTATTTGCACTTTCTC ACAAAGGTTATGCTTTTTTGTGCATACTGTGGGCTTAGACTTATATATCATGGCCTGACATATTTAATATCTGCAGATGG AGAAAAGTGCTGCACTTTTTAGGCCAAAGTTAATTGTCGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGAACGT ATTCGTAAGGTAAACTACATCTGATTATAGAAAACTTAGATATTTGATGTTTAGAACAACTGAGCGATGATATTGTATCT TTTACACTTGAATTTGTATAGGTCTGTGATAAACAGAAGGCAGTAATGTTGGCTGATATGGCACACATCAGTGGGTTGGT TGCTGCAGGTGTTATTCCTTCTCCTTTTGATTATGCAGATGTTGTAACAACCACAACACATAAGTCACTTCGTGGACCAC GTGGGGCTATGATCTTCTTCAGGAAGGGTGTGAAGGAAATAAACAAGAAAGGGCAGGAAGTGAGTTGAAGATTTTAAAGT TAATGTTATAAGGAAAAATTAATTACAAAGTAGGGAAAACACATGTGATCCCATCCCCCCTTAAGTAGGGAAAAGTTAAT GTTAATACCATTCTTGATTTCAGTCATCGGAAAATGTTCAATCATGCAAACTTTTATGATCTAGATGCTTGGGTGTGAAA GGTCTGTGTTATGATCCCACACCGGGCTGGGCATATGGGCAAAGTACACCCAAAAAGAAAAAAGTTTGGCTTTATGGTTT AGTTTGGTCCAATCTGTTCTTAATTCTAACAATTTCAAAGTTAGCTTACTTGAAAAAAATTCATTGGCTGAATTCCATCT GGCAGGTGTTGTATGACTACGAAGACAAAATAAATCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCTCACAATCACACT ATTACAGGCTTGGCAGTTGCACTGAAGCAGGTTTTTTTAATAGACTAGCCAAAGAAACTATAGTCATTACTCCTGGAAAA TATGTACTTCTGTATAAAAGCAAAATGGTCATTCTTGTGCATATTTTTTTGCTAGGCTGATGTAAATTCATTTCTTTCTT TATTTATGTTAATGTAGGCTATGACGCCAGAATTCAAGAATTACCAAAAACAAGTGCTTAGTAACTCCTCGGCTTTTGCA CAGGTAAAGTGAATGTCTTTTTAAGTATGCACACCAGTGCGGTAAAAACTATTACAATCTAGTTAATGGAATATCTTCCA TTGACTGTTGAGCCTGAGAGATTTGACTGTTTTAGCTGACTATGCTATGTTGATTGAATTCCAGAGTTTGATAGAGAAAG GCTATGAACTTGTATCTGGTGGAACTGAAAACCATTTAGTGTTGGTGAACTTAAGAAACAAGGTAAAAAGTGTGGTCCTT TCCTTCTTGGTCATATTTTCATCTGAAAAAATAAATCTGGGTAGTGCCATTTTGTTGATACACGCATGTAAATAAACCTG TTCAGAACAATCTTTCTATACTTACATTGAGTGAATGTAAAATCAGCTGTATGGTAAAAGTTGGCTTCAAAAGATATCTA CTGTGTGAAGCCTTCTCCTTAAATATTTTAGGAGGCAACAGGGAATAGCAACACAGAAATGCATGAGTAGGTTGTTTTTA TTGAGAATAGAATCACTAAAGGATAAGTTTTTCTCTTTAAACAGAAAATAAGAACCCTTTAGATATTGATGAACTTCATA TGATAGTGACCCTACCTTATTCCTAGACAAGTTCTTAGAAATTGGTATTGACATTTTAGTTATTATTTTACCTACCCAAA CTACTAGAAAACTTTCAATCCTTCGAAAACTGTTTTCTTCTTGTGTTATTACAGAAGAGCCTTCAAACAAATCAGAAACT TCCCCAATGTTTGTGCAATGTGCAAGTTATGTTTAAGGGATGTTCCAGGATTAAGATTAGGGAGTTTAGGCATTTATTTG GTAGCCCTATATTGTAAAAGCTGTAAATATTTTATTGGGTTTGATTTGACATTTATACTTAGTAGCATCGAGGGGCAAGC ACTTTCTAATGCTGTGCCATTTGACAGGGCATCGATGGCTCAAGGGTTGAAAAGGTGTTAGAATCAGTTCATATAGCTGC CAATAAAAATACTGTTCCGGGGGATGTGTCTGCTATGATTCCCGGAGGCATCCGAATGGGTAATGTCTCTCTCAGTCATC TATTTTTCATGTTTGTTGGTAAATCTATAACTACATGTTAATGAAAGTTATCTTGTCATGATTCAGGAACCCCTGCTCTC ACATCCAGGGGTTTCATTGAGGAGGATTTTAGAAAAGTAGCTGAATACTTTGACGCTGCAGTCAAGATAGCCTTGCAGAT TAAGGGAAACGCTAAAGGTTAACCCTACCATCCTGCATATTTGTTATGTCATGATATTTGCAGATTTGAAAGCATAGTAA GGTATCTTGGCCTTCCTGTATGCTAAGCTCACTCCTGTTATACTCCTGTTATACATTATGTTCAGGTACAAAGTTGAAGG ATTTTGTGGAAGCTATGCAGTTGGATGAAGAAATTCAATCTAAGATTGCTAAGGTCCGTCATGAAGTAGAGGATTATGCT AAGCAGTTCCCCACAATTGGTTTTGAGAAAGAGACAATGAAGTATAGCTCGTGA
CDS sequence (LotjaGi1g1v0134500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATGGCTCTCCGCCGACTCTCCTCCACCTTCACCAAACCAACCACCGCCTCTTCTGTTTACCGCATGTCCTCTTC CCTCCCCGCGCTCGACAATGACAAATCTCGCGCCGATGTAAATAAACCACTCTCCTTCTGGATAAAGCAGCTCAATGATC CTCTGGAAACCATAGATCCTGAGATCGCTGACATAATCGAACTCGAGAAAGCTCGTCAATGGAAGGGATTGGAACTTATA CCTTCGGAGAATTTCACGTCGCTGTCGGTGATGCAAGCTGTTGGATCGGTGATGACGAATAAATACAGTGAAGGGTATCC TGGTGCTAGATACTATGGAGGAAATGAGTACATTGACATGGCCGAGACCTTGTGTCAGAAGCGTGCACTTGAAGCTTTTG GGTTGGATCCAGCAAAATGGGGAGTCAATGTGCAGTCGTTGTCTGGTTCCCCTTCTAACTTCCAAGTTTACACTGCTTTA TTGAAACCTCATGAAAGAATTATGGCACTCGATCTTCCCCATGGTGGGCATCTATCACATGGCTATCAGACTGACACCAA GAAGATATCAGCTGTATCGATATTCTTTGAAACAATGCCGTACAGATTGAATGAGACTACTGGTTATATTGATTATGACC AGATGGAGAAAAGTGCTGCACTTTTTAGGCCAAAGTTAATTGTCGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTAT GAACGTATTCGTAAGGTCTGTGATAAACAGAAGGCAGTAATGTTGGCTGATATGGCACACATCAGTGGGTTGGTTGCTGC AGGTGTTATTCCTTCTCCTTTTGATTATGCAGATGTTGTAACAACCACAACACATAAGTCACTTCGTGGACCACGTGGGG CTATGATCTTCTTCAGGAAGGGTGTGAAGGAAATAAACAAGAAAGGGCAGGAAGTGTTGTATGACTACGAAGACAAAATA AATCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCTCACAATCACACTATTACAGGCTTGGCAGTTGCACTGAAGCAGGC TATGACGCCAGAATTCAAGAATTACCAAAAACAAGTGCTTAGTAACTCCTCGGCTTTTGCACAGAGTTTGATAGAGAAAG GCTATGAACTTGTATCTGGTGGAACTGAAAACCATTTAGTGTTGGTGAACTTAAGAAACAAGGGCATCGATGGCTCAAGG GTTGAAAAGGTGTTAGAATCAGTTCATATAGCTGCCAATAAAAATACTGTTCCGGGGGATGTGTCTGCTATGATTCCCGG AGGCATCCGAATGGGAACCCCTGCTCTCACATCCAGGGGTTTCATTGAGGAGGATTTTAGAAAAGTAGCTGAATACTTTG ACGCTGCAGTCAAGATAGCCTTGCAGATTAAGGGAAACGCTAAAGGTACAAAGTTGAAGGATTTTGTGGAAGCTATGCAG TTGGATGAAGAAATTCAATCTAAGATTGCTAAGGTCCGTCATGAAGTAGAGGATTATGCTAAGCAGTTCCCCACAATTGG TTTTGAGAAAGAGACAATGAAGTATAGCTCGTGA
Protein sequence (LotjaGi1g1v0134500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMALRRLSSTFTKPTTASSVYRMSSSLPALDNDKSRADVNKPLSFWIKQLNDPLETIDPEIADIIELEKARQWKGLELI PSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFGLDPAKWGVNVQSLSGSPSNFQVYTAL LKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNETTGYIDYDQMEKSAALFRPKLIVAGASAYARLYDY ERIRKVCDKQKAVMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKKGQEVLYDYEDKI NQAVFPGLQGGPHNHTITGLAVALKQAMTPEFKNYQKQVLSNSSAFAQSLIEKGYELVSGGTENHLVLVNLRNKGIDGSR VEKVLESVHIAANKNTVPGDVSAMIPGGIRMGTPALTSRGFIEEDFRKVAEYFDAAVKIALQIKGNAKGTKLKDFVEAMQ LDEEIQSKIAKVRHEVEDYAKQFPTIGFEKETMKYSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| PANTHER | 17 | 516 | 500 | 0.0 | – | |
| PANTHER | 17 | 516 | 500 | 0.0 | ||
| PIRSF | 35 | 512 | 478 | 7.3E-170 | ||
| SUPERFAMILY | 45 | 508 | 464 | 6.82E-181 | ||
| Hamap | 54 | 507 | 454 | 43.041 | ||
| Pfam | 55 | 452 | 398 | 7.8E-210 | ||
| CDD | 59 | 479 | 421 | 0.0 | ||
| Gene3D | 59 | 504 | 446 | 7.3E-220 | ||
| Gene3D | 84 | 357 | 274 | 7.3E-220 | ||
| ProSitePatterns | 278 | 294 | 17 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Glycine hydroxymethyltransferase activity | Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine. | ||
| Biological process | Glycine biosynthetic process from serine | The chemical reactions and pathways resulting in the formation of glycine from other compounds, including serine. | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. | ||
| Biological process | Tetrahydrofolate interconversion | The chemical reactions and pathways by which one-carbon (C1) units are transferred between tetrahydrofolate molecules, to synthesise other tetrahydrofolate molecules. |
Expression pattern of LotjaGi1g1v0134500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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