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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0137900 |
| Transcript ID | LotjaGi1g1v0137900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AP-4 complex subunit mu; TAIR: AT4G24550.2 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q9SB50|AP4M_ARATH AP-4 complex subunit mu; TrEMBL-Plants: tr|V7B6Q9|V7B6Q9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0137900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:22509403..22517521) extracted from Lotus japonicus Gifu genome v1.2.
CATAAGCTCTTAATTACACCAAACACATCCTTGTCCCATCCCCGTTAAAAATATACACCACCACACACACGTTAACTTCA ACGAAGACCGTCGTTCACTGCGTAGAAAACAGCAGCTTCTGCAACCAAGGTGCGTGAACGGAGCCATGATCTCGCAGTTC TTCGTCCTCTCTCAGCGTGGCGATAACATCGTCTTCCGAGACTGTAAACTCTCTCTCAACCACACTCTTGCATTTCGATT TGTTTCTCTTTTCATTTTTCTGGATCTGATTCTGTTTTCTTGATCCAATGTTTCGATGAATCCATTTCCAACTCGAGTTT TCTCGTTCAGTTTGCTGATCCGTACCGAGATTATCGCTAATTCAATACTCTATAATCCCAATTCACGCTTCCAGATCATA CTTCAACTCGATCGCTTGCTGATTACTGTGAAACATGCTTGTTGTTTTGTTAATTTCTCTCCGATTTTGTGCATTTCCTT GTAATTTCACATTTCTTAGGTCAAGCAAATTGTAGCTTAGAATGTCAAGTTTTGCTGCTGAATTGAATGCTAACATTTCA CTGCTTCTGTAATGTGATAGTGTATTGGAGTGGAGTGAACAAGATTATCAGTAGAAATCAATGATAATATGCGATAGGCG ATTTAACTGTCTAACTTGTCTTGATTGCAGACCGTGGTGAGGTTCCGAAGGGAAGTGCAGAGATATTTTTCCGCAAAGTG AAGTTTTGGGAAGATGGGGGACTGGAGGAGGCACCACCTGTCTTTGTAGGTATTATCTTTCTGAATCAGGCAGAGTGCAT TTTCATGTGCTTTAGGCTTGAAATCAGTATGTAAGCATTCTGTAATAATTCAATTGAAAAAGTTGAAATTAAAGAATGCC CATTCATGCTAATAATTGCTACCCCGTCGCCTTCAATTTATTTAAAATATGCAGAAATTGAAGATTCATTTGGTGTTATT GATATATATTTGTTGCAATTGCTTATGGTTTTGATAGTAATGTTTCAAATATTAAGTTCTCTCAAAATTAAGTGGTTATA TTTTGTGATATCTATTGTCTGTTCTGGTTATATTACTTGCGACTCTTCTGGTAGCATTCGCTGATTTATTTTGTGTTATG TTTTTTTCGTTTGCTGACAGAATGTAGATGGTGTAAATTACTTTCATGTGAAAGTTGTTGGCTTATTGTTTGTTGCAACT ACAAGGGTTAACATATCACCGTCCTTTGTTTTTGAGCTTTTACAAAGAATTGCTCGTGTTGTTAAAGATTACCTTGGGAT TCTCAATGAAGACTCAATACGAAAAAACTTTGTGCTTGTGTATGAGTTACTTGATGAAGTTATGGTGAGCTTCCTCCTAT TTGGTTCTTGTCTAATTTAAAGCCTAATTTCAGTCCTATATTTTCTTAACCGAAATGATTCTTCATTGAATTAAATTATA ACTATCTCTGCCCTCGCCTTTTTTTTCACAATCTAATCTTTATACAAGGCTCATTTTCTTCACTGTTGAGTCTTACTACT CCATTTGAAGTAATTATGTTGACAGTTAGCATCCAATAGATCTGACAGATATTTTCACAATATTTTTCTGGAAGTGCACA ATAGAAAGTACAAAGAACTCTAAATTTCTGTTGGATATTATATTTGGTTTTCTTTCTTCAAAAAAAAAAGGGAAAAAAAT AATGCCTATTTGCAATTTTTTTAATGTTTTGTTCCTGCTTTGACCTGAGATTTTTAGTCAGATAGTTATGTTACCTAAAA TTGCTCTCATGGCTTTATTCAGGATTTTGGTTATGTGCAAACAACATCTACTGAATTGTTGAAGTCCTATGTTTTCAATG AGCCAATTGTGATTGACGCCGCACGCCTGTCACCTCTTGGACCTGCTGCAATGTTTTCAGTATGATGTTTAATATCTTCT ATATCTAGTAGTTACTTGATTTTGTAATCATCACTTGCATTATGATATTATTTATTTTTAATTTTGGCTGCGTGCAGCAA GGGACAAAAAGAATGCCAGGAATAGCTGTTACAAAATCTGTTGTTGCAACAGAGCCCGGGGGTAGAAGGAGGGAGGAAAT CTTCGTAGATATAATTGAGAAAATCAGCCTCACTTTTAGCTCTAGTGTGAGTGCATACATATATATGACTCTGATTTTCA TAATGTTGGTTTGTCACTGCTTTACCTGTCCTGCATTATGAGTGCTTGCTTATGGTTTCCAGGATATGAACTGACAAAAC TAAATAATGATGTGTTAAGGGACTCAATATCAGAGAACAGATCTCACTCTTGACTCTTGAGTACTTGAAACTTGTTTGAT CTTAGTAAAGAACCATCAAGTTTAAACTTTAAATAAAATTCTATTTACAGACTGTTTGCTTCTTAATGGTGTGTTTGGTT GTGGAAAAGAATGTGAAGTGAGAAGATGAGAAGAGAGAATATGGTGAGAAAAAGAGTAGATTTTAAGGTTATTTGGTATA AGAGAAATAAGAGAGTAGTGGCTAATCTCTCCTCTCGTTTGGTTGAATTGAGAGTGAAAATTGAGAATGCTACTTTTTAG TAAAATGACATTTTACCTGAAATATTAAATGATTATAAATGAATAGTATATTGATGGAGGGATAAAATAGGAAAGTGGGA AAAAACCACAATCCTTTCGTCTCTCTTCATTTTGGAGTGACCACGAAAAGTAGTGGTCCTCAGTCCCTACCTCTATCTCT CTCCCTCCTACATACCCAAATAAGGGTGAAACCCTCTCTCTTCTAACTCTCTCTGGAACTCTTCGCAAACAGACGATGCA TAAATGCAAAATAAAGGCTTGAGTCTAATGAAACATTGTGAGTCAGTGTTGGATTAATTTTCTTTTATGCAATGTAGAAG ACTAGTAGTGCTTTATGGTACCAAATGTTACATTGATAAGTGTTGCAGTAAATGAGTGTACATAAAAGAAAATATAAGAT CACGAGTGGTTGTATGGAAGCAGCACCTTTTGAGGAAAAGTTGATAGAACAATTGCCTAAGATGGTTTGCCATGTGAAGG GAAAATCAATAGAAGGCCTTGTATGAAAAGTTGATTAGATCGAGGATACTGCAATGAATAGAAGTGGCAGAAGGCCAAAG AAACTAAGAGAAGCCACTAAAAGGACCTAGATCTAATTACTTCTCCAAGAACTTGTTCTTTACCAATTGGCATTGTTTTA CACTTGTAGCTGACCCTACATAGTATAGGAACGTTTGTTGTTGATTTGTGCTGCTAGTGTCATATGGCTTGGTCATTGTT AGTTGAACTGTCAAGTTGTTCATTTGTGATATGTTTTGTTTATCATTATTCATTCTTAGTATTCTTAATGGACCAGGGAT ATATACTGACTTCCGAGATTGATGGCACCATACAAATGAAGAGCTATCTTACTGGAAATCCTGAAATTCGATTAGCTCTT AATGAAGACCTTTCCATTGGAACAAGCCAGGGAACCAGTTATGGTATATTTTTTCCCCATTTTTAGTGGTTTTTCATTTC TAGTTCTCTGTTCTTGTTCAAAATTGGTAGATTGTTGCTTAGGATTGCATTCTTCTTTTCCTAGAAAGATAAATTATGTG GACAAATATGACTTATTTGTGTGCTGATTTTTAGTTTTGGGCAATGAAAACCATATGTTGATCTTATGGATTTTGATTGA CAACTAATATTTCATTGGATCTGATGATCATCGATTTTGCATTTTCATCGGTGCTTTCACAATGAACCCACCATCACTAG CTTTGGGGCATTGTGTTAATTTCTTCTACTTTTCTTTGTTATTGTTTGTGTGTGTGGGATAGACTTATTGTTTCCTGTTG TCTATCAAAAAAATCATTTTAACATGTTTCTTGAGCAGGTTATAGGAGTTCATCTGGCTCAGGACCGGTGCTATTAGATG ACTGTAATTTTCATGAATCTGTTCGCCTTGACAGCTTCGATACGGACAGAACCCTATCCCTGGTGAGTACAGAAATAGTC TTAAAAATCATTAATTTTTTCAGAATATAATAATTACTTTATTCCCTTGCTTCCTTTTGATTATTAGTTTTTATTGTTGT ATTGTACTGTCAACATTAGGTACCACCAGATGGTGAATTTCCAGTCATGAACTACCGTATTACCCAGGAATTTAGGCCTC CTTTTCGTATTAATGCTTTAATCGAAGAAGCAGGGTCCCTTAAGGTGATACCTACTTATCAATTTTTTTTTTCATAGAAA TATCTTTTGGCTTATAATCCTTTAACATGGTGCCGTTATGCTTTCTTGTGTTTTCTTGAACAACAGTAATAGTAACTGAG GAATATTATTGTCATAATTCTATATTTCCTGTTTATTCTTTTGCACCATGGTAACATTGGCCTAATCTTTTAGATGGATT AGAATGTATCAAATTGGAATATTATGTGTCAGCATACAGATATGCTGTATCAAAATCTTTCCTCTCCCTTATGGAGTGAT CCCTATTCCCATAGCCCTCTTCTTACGTTAGAGATCTTTATTGTTTATTCTAACTAAAAAAGACAAAGTTTTCCAATGTT AAATCTTTTCTGTACCACTATTAAGCCATTTTTCAAATCTCAAATGTCAAAGTCATTGGCTTTTCTCCGTGCACTCGGTA ACACTTTTGAATTTGCTATTACAGGCAGAAGTAATTCTTAAAGTAAATGCACAGTTTGCCTCAAGTATAACAGCAAACAC TGTCAAAGTGCAGATGCCACTCCCAAAATGTACCACCAGGTATCATCTTATAATTCTCCAAACCATTGAATAAGTGAAAA CAAAGGATGTTTGACAGTGATTTTCGATTAATTAGAAACTTTTACAGAACTTGTTATGCATTGCATGCAAGTATGCAACT GTTGAAATCTATGAAATGTTGGGTCATGGTTTTATGTCCTACTAAAGTATACATAATCTGTTTTACATAGGATTAGAGCT GGTTTATAACTGGAATGGATTTTAGTCTGTACCACAATGCACTTAAGCTTGGGCTAAAATTCAATTCTATTTGAAAGTCA TGAAGGCTTTGAGACTGTTGAGATCCCACATTGACTGGACATATCACATAAGTAGAACATATAAAGGCTTGGGTAATTCT CACCTCATGAGATAACTTTTAGGGTAGAGTTAGGCCCAGCCCAAATTCAAGATGGTACAAAAGCCTATCCATCCGATAGT AGGCCACCCACTGCTGTCCTAAAATCTTCTTAGCCTCGCAGCTTTCCCATTGTAATAAAAAAAATCAATTCTTTAATCTC TATGATCTACTTGTCAAGTCGTGGGTGTGAGGGGTGTTTTGAGGTTGAACCAAGTGGTTTGAAGTTTGATCCTTGTTTCC TCATTGTTTGAATAAAAAGTTGAGTTTCAACACAAGGTGAGTGGGGTCTTGCATGAAGGGACATGTTAAAAATATAATTT TAGACCATTTATGTGTTTTTACCCAACAACTTAAGTTTTTGGGATAGTTGGTTCATGACAATCATAATTTATTAAGATTC ATGTGCAATTTGGAGCTTGTAATTTGAAAATTATATAAAAAAAAATCTAATTTATTCAGCCCTTTTTAAGTGTTAGCATA TCATGGGTCTTGCACATTTTGTCCTGTGGATAAATTGCAATCCAGGAACCTAGGAAATTCACATTTCCTTGCATATAAAA ACATGTGCACAAGGTAGTAATTAAAGTTGCGGACTAAGTTGTTATATTGAATTGTCTCAGAGTTAGTTTTGAACTAGAAC CTGGAGCTGTTGGACAAACAACTGACTTTAAGGAGGCAAATAAGAGGCTAGAATGGAGTTTAAAGAAGGTAATGTTTCTT GTATTTCTAAAACGTTTTTATTCTGGTCATCAATTTTTTTTTCTGGAGTAAATGATAGCTGATAAGTGGAACCGAACAGA TTACTGGAGGCTCGGAGCATACTTTACGTGCAAAGCTAACCTTTTCTCAGGAAATACACGGTATTTATCCTTTTAGTTAG TGCATGCTCAAAATGGATAGTCTGTTTTTTATTTGATTGAATGTTTAACAGCATATCATATTTACGCAAATTTATTTCTT AACAGGTAATATAACGAAAGAATCTGGACCTGTTAGCATGACATTTACTATACCAATGTATAATACGTCACAACTTCAGG TAAACCCAGCATGTCAAATTGCTGTTTTCCTTTTCTAGTTTTTATTTTAACAAAAACCGTTCGTTGTTCGTTCCCAGATC TCTTAACTGTTTGTTTTCTACAAGCCTCATAATATGTCTGTATTGTATCTCTTGTTCTCTATTTGGTCATGTGGTTTATA TTTGCTGTGTGTGAACAGTCTTGTCACAAACCTGGTCATGCAAGTGGTCCTTTAAGTTATCCTAGATCATGGAATAGAGT TCCTCTTTATGATAATTAAATACTCAACATGAATGCATGCCATTTCATTTGTATTGACTGCTATTTGCACCACAGATTAG GATCCTCTCGTGTGGATACTTAACATGAAACTATTGTGTTAAAATTTGGTGTCTATCTCTCTCTCTCTCTTTATACATAT TAAATAGGCGAGTCTCTCTAAAATTTATGAAGAGAGATAGGCACAAAGTTTCACCATTTGACTGTGACATGAGAGGATCC TAGTCTCTGTACCACCCCTACTACTTTTAACTTTTGAGAAACCTCCTCCTCTCCCGTTTTATCTCTCAATCAGGCTGGAG AAACAGACCCATTAGATGTTTAGGGTCAATTATTTTAGGAACTCTGCTCATATCAAACGTTTTGTATTTCCTATATTAAC TGAAATATCAATTTTATAGATGCCTAAAGCCGTTTGCTAGACTCAGCTACATGAAAAAACGTTGCCATCTAGATTTTGAG CATTGCATATTGGAAGTTCATTTGAATATTGTTGGTCCCTTAAAAAATGATTAATTTGAACGCATGAGCCATATCGGTGC CAAGTTCTTACTTCTTTCCTACATACAGGTAAAATATTTGCAGATATCAAAGAAATCTGGAACGCACGAGCCATACCGGT GGGTTAGATATGTAACACAGGCAAATTCCTATGTTGCTCGTATATGATGCAGTTAAGCAAACCCTACTGTTTACCCCCCC CCCGGCGCTCTTTGTTATTGCTTTTGTTGTATTTACTTTATTCTTTATTTGTATATTACATTCAAGTTCAGTATAGACGA CGTTAGTTGTTTGCTTTCCTCTCCATTACACACATACACCAAGCTGGATTTATAGCCTGGATGAATTCACTATTTTTTCT TTCCCATTTCCCATAAATGGATTCGGATTACTCCGTCCTGTTATAGAGCTTTTATGAGAACATTTTCAAATGTCTATGCA GAAATCATGAGCAAAACTGGTTGTCAATTGTAGCAGAAGATCTATCATGTACACAGAAGAGTGGGTGAGGATTACAAGAT CGGTATATAAGCTGGTGAATTTAGCGAAGTAGCAACCGACTAATATATAAATCTATAATTCTATATATCTTATCGAACTG TGCCTTTTGTCGAATCTTCAAATATCAATTGCAGCAGATGACGATTGATTTCTAGAAAGCTAGTAGTGTTAATCGCATCA GCAAATAATTGCTTCCGATGCCTCACTATACTTTCAGCCTTATCAAACGTTGGATTGTAAACCTCTTATCCATTATCAGT TCTACAACTACATCTTCCTAGAAAAGTCAATAAACGTCACAATGTACTTGCATCCACCATGAGATTCAACAACGAAGGTC TCCACAAATGTGAACGTAGAAATCTGCTTTCAAGAATTGAACTTCATGAATGACAATTGATCCATGGTTGTTATAAGATG CTTTCGCTTAAATAACCCATGTATTGGTTGTGCTTGATATGCTAACAATCAATGCATCACTGCCTTCTCTTTCACCAGAG ATGTGTTGAACACTGTTGCATTAACATTACCATTTGTTTCCTTATTCTCTCTACCTCCATTCCATTGTGGACAATCCCTG TTAACGTGACCTTTTTCTTTACAATGGAAGCTTTTAGGTCCTCTTTACTTTGATTTGGAAGGATCTTTGTCCTTCCCGGT TCCCACCACCTCTATCCTGCTCTGGCTCCCACTCATGCT
CDS sequence (LotjaGi1g1v0137900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCTCGCAGTTCTTCGTCCTCTCTCAGCGTGGCGATAACATCGTCTTCCGAGACTACCGTGGTGAGGTTCCGAAGGG AAGTGCAGAGATATTTTTCCGCAAAGTGAAGTTTTGGGAAGATGGGGGACTGGAGGAGGCACCACCTGTCTTTAATGTAG ATGGTGTAAATTACTTTCATGTGAAAGTTGTTGGCTTATTGTTTGTTGCAACTACAAGGGTTAACATATCACCGTCCTTT GTTTTTGAGCTTTTACAAAGAATTGCTCGTGTTGTTAAAGATTACCTTGGGATTCTCAATGAAGACTCAATACGAAAAAA CTTTGTGCTTGTGTATGAGTTACTTGATGAAGTTATGGATTTTGGTTATGTGCAAACAACATCTACTGAATTGTTGAAGT CCTATGTTTTCAATGAGCCAATTGTGATTGACGCCGCACGCCTGTCACCTCTTGGACCTGCTGCAATGTTTTCACAAGGG ACAAAAAGAATGCCAGGAATAGCTGTTACAAAATCTGTTGTTGCAACAGAGCCCGGGGGTAGAAGGAGGGAGGAAATCTT CGTAGATATAATTGAGAAAATCAGCCTCACTTTTAGCTCTAGTGGATATATACTGACTTCCGAGATTGATGGCACCATAC AAATGAAGAGCTATCTTACTGGAAATCCTGAAATTCGATTAGCTCTTAATGAAGACCTTTCCATTGGAACAAGCCAGGGA ACCAGTTATGGTTATAGGAGTTCATCTGGCTCAGGACCGGTGCTATTAGATGACTGTAATTTTCATGAATCTGTTCGCCT TGACAGCTTCGATACGGACAGAACCCTATCCCTGGTACCACCAGATGGTGAATTTCCAGTCATGAACTACCGTATTACCC AGGAATTTAGGCCTCCTTTTCGTATTAATGCTTTAATCGAAGAAGCAGGGTCCCTTAAGGCAGAAGTAATTCTTAAAGTA AATGCACAGTTTGCCTCAAGTATAACAGCAAACACTGTCAAAGTGCAGATGCCACTCCCAAAATGTACCACCAGAGTTAG TTTTGAACTAGAACCTGGAGCTGTTGGACAAACAACTGACTTTAAGGAGGCAAATAAGAGGCTAGAATGGAGTTTAAAGA AGATTACTGGAGGCTCGGAGCATACTTTACGTGCAAAGCTAACCTTTTCTCAGGAAATACACGGTAATATAACGAAAGAA TCTGGACCTGTTAGCATGACATTTACTATACCAATGTATAATACGTCACAACTTCAGGTAAAATATTTGCAGATATCAAA GAAATCTGGAACGCACGAGCCATACCGGTGGGTTAGATATGTAACACAGGCAAATTCCTATGTTGCTCGTATATGA
Protein sequence (LotjaGi1g1v0137900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISQFFVLSQRGDNIVFRDYRGEVPKGSAEIFFRKVKFWEDGGLEEAPPVFNVDGVNYFHVKVVGLLFVATTRVNISPSF VFELLQRIARVVKDYLGILNEDSIRKNFVLVYELLDEVMDFGYVQTTSTELLKSYVFNEPIVIDAARLSPLGPAAMFSQG TKRMPGIAVTKSVVATEPGGRRREEIFVDIIEKISLTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGTSQG TSYGYRSSSGSGPVLLDDCNFHESVRLDSFDTDRTLSLVPPDGEFPVMNYRITQEFRPPFRINALIEEAGSLKAEVILKV NAQFASSITANTVKVQMPLPKCTTRVSFELEPGAVGQTTDFKEANKRLEWSLKKITGGSEHTLRAKLTFSQEIHGNITKE SGPVSMTFTIPMYNTSQLQVKYLQISKKSGTHEPYRWVRYVTQANSYVARI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 451 | 451 | 2.5E-261 | – | |
| PANTHER | 1 | 451 | 451 | 2.5E-261 | – | |
| SUPERFAMILY | 1 | 141 | 141 | 1.24E-36 | ||
| PIRSF | 1 | 451 | 451 | 1.6E-115 | ||
| Gene3D | 1 | 142 | 142 | 1.7E-50 | – | |
| CDD | 3 | 143 | 141 | 7.54577E-91 | – | |
| PRINTS | 12 | 32 | 21 | 4.6E-33 | ||
| PRINTS | 101 | 128 | 28 | 4.6E-33 | ||
| CDD | 174 | 451 | 278 | 4.90231E-151 | – | |
| Gene3D | 182 | 446 | 265 | 1.2E-89 | – | |
| Pfam | 182 | 451 | 270 | 1.5E-71 | ||
| SUPERFAMILY | 182 | 450 | 269 | 4.32E-75 | ||
| ProSiteProfiles | 183 | 450 | 268 | 38.15 | ||
| PRINTS | 256 | 283 | 28 | 4.6E-33 | ||
| Gene3D | 298 | 450 | 153 | 1.2E-89 | – | |
| PRINTS | 325 | 340 | 16 | 4.6E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. | ||
| Cellular component | Clathrin adaptor complex | A membrane coat adaptor complex that links clathrin to a membrane. |
Expression pattern of LotjaGi1g1v0137900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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