Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0172100 |
| Transcript ID | LotjaGi1g1v0172100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chlorophyll a-b binding protein, chloroplastic; TAIR: AT1G61520.1 PSI type III chlorophyll a/b-binding protein; Swiss-Prot: sp|Q32904|CB23_PEA Chlorophyll a-b binding protein 3, chloroplastic; TrEMBL-Plants: tr|I1JJU8|I1JJU8_SOYBN Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi1g1v0172100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:32772444..32775247) extracted from Lotus japonicus Gifu genome v1.2.
TATAATAAGACCGAGGAAATTCCCTCTTATCCAATTCATCCTACCACGTGTGTATACTTGGTTGGAGAACTAGATCTTAA TCTCATCCTCCTTCAATATCAACCATGAGTTCAATGCTGTTCTTGAAGTAGTGGCTTAGAGTTGTTCATAACTTCATATC TTCCTGCTAGCCTTGGCTTATTAGTGTGTGGGTGCGCAATAGTATCATTCATTCTTAAAATCTAATTAATATTCTAGAAC AAACCTCTCTTCTGCTCCACACTAGAGAGGGAAAAGCCATGGCTGCACAAGCTCTTGTTTCTTCATCATCTCTTGCATTC TCAGCTGAGGCTGCCAAACAGAGCCTTGGAGCAAGATCACTCCAATCTCCTATTGGATCCTCCAGAAAAGGCTCCTTCAT TGTCAAGGCAGCTTCTACTCCTCCTGTCAAGGTCCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACTCA AATGTGCTTTTTTTTTCCCTTCTTCTACACATGTGTCCTTTGATCTGCATTTTTATTGAAAAAAGCTTTCTCTGTCTTTT GGATTCAGCAAGGAGCAAATAGACCCTTGTGGTTTGCATCAAAGCAGAGTCTTTCTTACTTGGATGGCAGGTAATTTCAT CCTAATTGAAAATGAGTGCTATGTTTGTGTTAATTCAGTGACAGTGTACCTGACCACATGAACTTATAAGTTATAACATC ATTTTAAGTGGATAATTAATAGTATTATTTCCAAAGTTTAAGTATGAATGTGATTGTAATTCACTTATACAGTGGTTATT TAACCTGTTATCTACTTAATTAGATGTTTGAGAGACTAAATTTAGCTAAGCTAAGTATGCAAGTTAGTAGGCTAAAAATT GAGTGAATGGTTGAATTCGTTCGTGAATTCATAGGTTGGTCATGCATGAAGGAAATACCTTCATAAATCCTTGAATTTGA AATTAATGTTGGTCCCTCCCTTAAAAATCCCTGAAAGTTAGTGGACTGAAACTGACAAAGGATCAACATGACTCACAATT GAATTGACACATTCAAGGGTTTCTGAAGGATGAATTGGAGGGTTCACTGGCTAAAAATTTGAAGGATTAGCTAAATATTT TCATATCTCTGTTTTTCTCATTGAATTTTCGCCCACTTTTTCCAATTTGTATTTTTTTCCCAATCATATCACTTTTGCTA TCTCTTCATTGTCTTTTTTTTCCTACATCAAAGGCAGAGCTGACATGAGTGTGAACAATAAAATTTTACAAGATATATAT GCAGCATAATCGGTTAATATGGATGAAGTTTTGTTCTCACCTCATTATAGTGGTAAAGAGATGGAGGGGTGAGAGATAGG AAGAAAAAAGAGAGAAAGTATGTACGAGATGTGATATATAATATGATAGGAAATAAGGAGAGGTAGAAACACAAAATTAA GTGAAAAAGAGCGGAAATTTTTTGGAGTGCCATGAATCCAGATTGGGTTAATTTGATATATAGCTTGAAGTTGCTGGAAC TGACTTCAATTTTGGCATCCTTTGCAGCCTTCCAGGTGACTTTGGATTTGACCCACTAGGACTCTCAGACCCTGAAGGAA CAGGAGGGTTCATCGAGCCAAAATGGCTAGCATACGGTGAGATAATCAACGGTCGCTTCGCAATGTTGGGTGCAGCCGGT GCCATCGCGCCTGAAATTCTCGGCAAGGCCGGTCTGATTCCAGAGGAAACAGCACTCCCATGGTTCCAAACCGGTGTGAT TCCACCTGCAGGAACATACAGCTACTGGGCAGACTCATACACGCTGTTTGTGTTGGAGATGGCGCTCATGGGCTTTGCGG AGCACAGGAGGTTCCAAGACTGGGCCAAGCCCGGGTCCATGGGCAAGCAGTACTTCTTGGGCCTGGAGAAAGGCCTCGGA GGCTCCGGTGACCCGGCGTACCCTGGCGGGCCTTTCTTCAACCCTCTTGGGTTCGGTAAGGATGAGAAATCCATGAAGGA GTTGAAGCTCAAGGAAGTTAAGAATGGAAGGTTGGCCATGTTAGCAATCTTGGGTTACTTTATTCAAGGCCTTGTCACTG GTGTTGGGCCTTACCAAAACCTCCTAGATCATCTTGCTGACCCTGTCAACAACAATGTCTTGACCAGTCTCAAGTTCCAC TGAATCTAATTAATGTATGTATCAATCTATGTATATGTATGTTGTTACATATATATTCATTACTCTCGGTTGTTGTTGGG GACTAGAGCATCATCGTGTGTACCTTTTGTTCCATGGTGTGGTGTTGTAAGGAAATGATCGACATGTAAAAGAACTAGAA CTATTCAGCATCCTGTGTTTGCATAGATTCCTAACGTCCCTGATCCATTCTCTCAAGCCTTTTCTACCTTTAAAATCGCA CAAAATAATGCTACGATTTTTCATATTCACGAAACGTATTGAAATTAACTGAAGGAAAACACTATTCTTCAGTGAAGAAA AATGAAGATGCATGAAACTTAATGTTTATGTAAACCTCTCATTGTCTCGCCCAAATTCACCTGAATGGATACCTTGCTGC AACTTGCACACATTACATGAAACATCCAAGACAAATGAAGCAAAGTCATTCCTTTATAGACGATCACCAATGGCGACCTT TTTCAATCCATTTCCTTTTGATGCGGTTAATGGAAATAGATAGAGATTTACAATACCCAAATTTGAAATCATAAACTGAA TCATGCTAACATCCATAGAAAGAGCTTTGAGATGAATTTTACATTTTTAAGCTTGATTGTATTTTAATTTTGGAGAATTT TTAA
CDS sequence (LotjaGi1g1v0172100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCACAAGCTCTTGTTTCTTCATCATCTCTTGCATTCTCAGCTGAGGCTGCCAAACAGAGCCTTGGAGCAAGATC ACTCCAATCTCCTATTGGATCCTCCAGAAAAGGCTCCTTCATTGTCAAGGCAGCTTCTACTCCTCCTGTCAAGCAAGGAG CAAATAGACCCTTGTGGTTTGCATCAAAGCAGAGTCTTTCTTACTTGGATGGCAGCCTTCCAGGTGACTTTGGATTTGAC CCACTAGGACTCTCAGACCCTGAAGGAACAGGAGGGTTCATCGAGCCAAAATGGCTAGCATACGGTGAGATAATCAACGG TCGCTTCGCAATGTTGGGTGCAGCCGGTGCCATCGCGCCTGAAATTCTCGGCAAGGCCGGTCTGATTCCAGAGGAAACAG CACTCCCATGGTTCCAAACCGGTGTGATTCCACCTGCAGGAACATACAGCTACTGGGCAGACTCATACACGCTGTTTGTG TTGGAGATGGCGCTCATGGGCTTTGCGGAGCACAGGAGGTTCCAAGACTGGGCCAAGCCCGGGTCCATGGGCAAGCAGTA CTTCTTGGGCCTGGAGAAAGGCCTCGGAGGCTCCGGTGACCCGGCGTACCCTGGCGGGCCTTTCTTCAACCCTCTTGGGT TCGGTAAGGATGAGAAATCCATGAAGGAGTTGAAGCTCAAGGAAGTTAAGAATGGAAGGTTGGCCATGTTAGCAATCTTG GGTTACTTTATTCAAGGCCTTGTCACTGGTGTTGGGCCTTACCAAAACCTCCTAGATCATCTTGCTGACCCTGTCAACAA CAATGTCTTGACCAGTCTCAAGTTCCACTGA
Protein sequence (LotjaGi1g1v0172100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAQALVSSSSLAFSAEAAKQSLGARSLQSPIGSSRKGSFIVKAASTPPVKQGANRPLWFASKQSLSYLDGSLPGDFGFD PLGLSDPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPEETALPWFQTGVIPPAGTYSYWADSYTLFV LEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAIL GYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 276 | 276 | 1.6E-168 | ||
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| PANTHER | 1 | 276 | 276 | 1.6E-168 | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| Phobius | 15 | 18 | 4 | - | – | |
| Phobius | 19 | 148 | 130 | - | – | |
| SUPERFAMILY | 55 | 272 | 218 | 4.45E-57 | – | |
| Pfam | 67 | 245 | 179 | 1.6E-47 | ||
| Gene3D | 85 | 256 | 172 | 6.9E-75 | ||
| Phobius | 149 | 169 | 21 | - | – | |
| Phobius | 170 | 233 | 64 | - | – | |
| Phobius | 234 | 254 | 21 | - | – | |
| Phobius | 255 | 276 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Photosynthesis, light harvesting | Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi1g1v0172100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…