Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0183700 |
| Transcript ID | LotjaGi1g1v0183700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein; TAIR: AT5G65200.1 plant U-box 38; Swiss-Prot: sp|Q9FJP6|PUB38_ARATH U-box domain-containing protein 38; TrEMBL-Plants: tr|A0A072UZS8|A0A072UZS8_MEDTR Armadillo/beta-catenin repeat protein; Found in the gene: LotjaGi1g1v0183700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:35825876..35828591) extracted from Lotus japonicus Gifu genome v1.2.
CCGGAAGAGAAAAAAGGCAAACATAAACCTCATCCAGTAATCAATCTTATGATGTCTATCTAATTCGCAACTTGTCCCCG TCTTCTTAATGCTAGTCTAGTCCGTACTCTCTCTTCTGTCGACACTCGACACTCGACACACACAAACACACCCTTAGCAA CCTGACTCAGTCTCACCCAACAACAATAATACCATGTGCATCTACTATTCCTTCAACCTCACTTGATTCATTCATTGATT CATTCTCAATTTCTCATTCTTATAATCAATTCCATTCAAATCCATCATCATTCTCTATTCATCAAACACTCAACAAACCA AGAAATTGTCAATAATTTATGGGTGGCAACGGTAAACACAGGTGGAAAATCTCCTTCCACCGTTCTTCCTCCCACTCTAA GCTTGAACCTCCTAAGGAATTTCTATGCCCCATTTCCGGGTCATTAATGTCCGACCCGGTTGTCGTCTCTTCGGGTCAAA CATTCGAGCGTCTCTCCGTTCAAGTCTGCAACGACTTGAAGTTCTCACCCAATCTCAACGGAACCCGACCCGATTTCTCC ACCGTCATCCCCAATTTGGCCATCAAAACCACCATCCTCAACTGGTGCCGCAAATCCGCCACCCCACCACCGTGCCCGCC CGATTACTCCGCCGTCGAGAGCCTGGTTCGTCAAGCAATGGCGGCGGAGCCGCAAGAGAGTGTTAGGGTTTCCGAGAAGG AGCTGCTGAAGGCGGTTGCTGATAACCCGGTGATGATAGGTTTCTCTCACGCCGCCACTGAACTGGGTCCGCCCCGGGTT AACGACTTCAACTCCGCGTCGTCGTCGGAGGAATCGGTTATCATCGCCGCGAGTCCCCCCGGAACGCCGTTGCCGCTCAC CACTCGCCCTACTTGCTTCTCTTCGTCGTCGTCGTCCTCCTGCGAGATCGAAGCGCAAAACCCTAGCGGAGCTCCTCCTT CGGAGGAGGAGGCGAGATTGGTGAAGATGATGAAGAGCAACGAGGTTTTCGAGCAAGAAGAAGGCGTGGTTATGCTGAGG AGTGTCACCCGGAACAGGGAAGAGGCTCGGGTTTCGCTCTGCACGCCGCGTCTTCTCTCGGCGCTGCGGTTGTTGGTGGA GTCGCGATACGTCGTCGTTCAGGTCAACGCGGTGGCGTCGCTGGTCAACCTTTCTCTGGAGAAGACTAACAAGGTGAGGA TTGTGCGGTCAGGGTTTGTTCCGTTTCTCATCGATGTTTTGAAAGGGGGATTCAGTGAGTCGCAGGAGCACGCTGCGGGC GCGCTTTTCAGCTTGGCGCTGGATGATGACAACAAGATGGCGATTGGGGTTCTCGGCGCGTTGCAGCCGCTAATGCACGC GCTGCGGTCGGAATCCGAGAGGACTAGGCATGACTCGGCGCTTGCGCTGTACCACTTGACTCTGGTACAGAGCAACCGGG TCAAGCTGGTGAAGCTCGGGGTTGTCCCGACGCTGCTTTCAATGGTGGCGAACGGGAATCTGGCGAGCCGGGTGCTGCTG GTTCTGTGCAATGTGGCTGCGTGCGTGGAGGGGCGGACCGCGATGCTGGATGGCAATGCGGTTGAGATTCTGGTGGATTT GCTGAGGAGGAATAAGTTTGACTCGGAGGCTACTCGGGAGAACTGCGTGGCTGCGCTGTACGCGCTGAGTCATGGGAGCT TGAGGTTCAAAGGGTTGGCAAAGGAGGCTAAGGCTGTGGAGGTACTGAGGGAGATTGAGGAGACGGGAACGGAGCGGGCA AGGGAGAAGGCTCGGAGGGTGTTGCAGACGATGAGGGCTGGTGAGGATCAACCAGGGTCACAGTTTGATAGCCTCTTCGA ATCCGATGGGTTGCCTCGGACTCGCCACCGAGCTGCTGGTGCCTGGAACACCAACCATGTGAACTCAACCACATTTTAGG TTTCTGATTTTCATTTGATTTCCAATACCCTTTCCTTCCCTAATTTAATTTTTTTCAACAGTTTAAACTTGTTGGTTTAG GGTATGTAGAACAAGGGATAAATTGTAAGTTATTGATGAAATTTGTAAGTAAGTAGTAACTGTAGGGGATTGATTGAAGT AGAGGTTGGGTTTGAAGTGGGAACTAGTATATATGGTGTTGCTGGATTTTGGTGTAAATCATGAAGGTGGCCATTTCAAG CTTGCTATTCTGCATTTTTTTGTTTTGTTCTTTTTTAGCTTATGTTGAGTAGTATAGTTTCTTATCATGGTTACTTTAGG TGAACAATTGTGCTAGTGTGTACATAATCATACTACATTATCTACTTAGGTTCATACCAAAAACAGAGATTTGTAGAGTG ATTCGTGGCACTGTGAACTGGTTCATTTGTTAAGAATCAACAGTGTACTTCCCTTACTATTCCCATGTCATTCCTCATGT AGTCTGAGTTTTCATTTCAATTTTAAGATGCCAATATCTCAATATTATGCATACAGATTTGGAGCCATTTTCCTCTAGGG ACTTCATTTTGTCCCCCCTTCTTGCTTTCACATCTATTTTTATTTGCTTCCTCTGTTCGCCCAGACTTGTGGGACAGAGT GTGCGGGAAAAAGAGAATTTGACAGAACTCTTGTTAAACTATTGTTTTGCATCTTAAGTTTGTATCTAAAATGCATGTCT CTGTCAGATGAAATATTTAAAATTGATTATAAATATAGAAAGCAAAATTGTTGTGCGTGCAAATGATTAACATCAC
CDS sequence (LotjaGi1g1v0183700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGGCAACGGTAAACACAGGTGGAAAATCTCCTTCCACCGTTCTTCCTCCCACTCTAAGCTTGAACCTCCTAAGGA ATTTCTATGCCCCATTTCCGGGTCATTAATGTCCGACCCGGTTGTCGTCTCTTCGGGTCAAACATTCGAGCGTCTCTCCG TTCAAGTCTGCAACGACTTGAAGTTCTCACCCAATCTCAACGGAACCCGACCCGATTTCTCCACCGTCATCCCCAATTTG GCCATCAAAACCACCATCCTCAACTGGTGCCGCAAATCCGCCACCCCACCACCGTGCCCGCCCGATTACTCCGCCGTCGA GAGCCTGGTTCGTCAAGCAATGGCGGCGGAGCCGCAAGAGAGTGTTAGGGTTTCCGAGAAGGAGCTGCTGAAGGCGGTTG CTGATAACCCGGTGATGATAGGTTTCTCTCACGCCGCCACTGAACTGGGTCCGCCCCGGGTTAACGACTTCAACTCCGCG TCGTCGTCGGAGGAATCGGTTATCATCGCCGCGAGTCCCCCCGGAACGCCGTTGCCGCTCACCACTCGCCCTACTTGCTT CTCTTCGTCGTCGTCGTCCTCCTGCGAGATCGAAGCGCAAAACCCTAGCGGAGCTCCTCCTTCGGAGGAGGAGGCGAGAT TGGTGAAGATGATGAAGAGCAACGAGGTTTTCGAGCAAGAAGAAGGCGTGGTTATGCTGAGGAGTGTCACCCGGAACAGG GAAGAGGCTCGGGTTTCGCTCTGCACGCCGCGTCTTCTCTCGGCGCTGCGGTTGTTGGTGGAGTCGCGATACGTCGTCGT TCAGGTCAACGCGGTGGCGTCGCTGGTCAACCTTTCTCTGGAGAAGACTAACAAGGTGAGGATTGTGCGGTCAGGGTTTG TTCCGTTTCTCATCGATGTTTTGAAAGGGGGATTCAGTGAGTCGCAGGAGCACGCTGCGGGCGCGCTTTTCAGCTTGGCG CTGGATGATGACAACAAGATGGCGATTGGGGTTCTCGGCGCGTTGCAGCCGCTAATGCACGCGCTGCGGTCGGAATCCGA GAGGACTAGGCATGACTCGGCGCTTGCGCTGTACCACTTGACTCTGGTACAGAGCAACCGGGTCAAGCTGGTGAAGCTCG GGGTTGTCCCGACGCTGCTTTCAATGGTGGCGAACGGGAATCTGGCGAGCCGGGTGCTGCTGGTTCTGTGCAATGTGGCT GCGTGCGTGGAGGGGCGGACCGCGATGCTGGATGGCAATGCGGTTGAGATTCTGGTGGATTTGCTGAGGAGGAATAAGTT TGACTCGGAGGCTACTCGGGAGAACTGCGTGGCTGCGCTGTACGCGCTGAGTCATGGGAGCTTGAGGTTCAAAGGGTTGG CAAAGGAGGCTAAGGCTGTGGAGGTACTGAGGGAGATTGAGGAGACGGGAACGGAGCGGGCAAGGGAGAAGGCTCGGAGG GTGTTGCAGACGATGAGGGCTGGTGAGGATCAACCAGGGTCACAGTTTGATAGCCTCTTCGAATCCGATGGGTTGCCTCG GACTCGCCACCGAGCTGCTGGTGCCTGGAACACCAACCATGTGAACTCAACCACATTTTAG
Protein sequence (LotjaGi1g1v0183700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGNGKHRWKISFHRSSSHSKLEPPKEFLCPISGSLMSDPVVVSSGQTFERLSVQVCNDLKFSPNLNGTRPDFSTVIPNL AIKTTILNWCRKSATPPPCPPDYSAVESLVRQAMAAEPQESVRVSEKELLKAVADNPVMIGFSHAATELGPPRVNDFNSA SSSEESVIIAASPPGTPLPLTTRPTCFSSSSSSSCEIEAQNPSGAPPSEEEARLVKMMKSNEVFEQEEGVVMLRSVTRNR EEARVSLCTPRLLSALRLLVESRYVVVQVNAVASLVNLSLEKTNKVRIVRSGFVPFLIDVLKGGFSESQEHAAGALFSLA LDDDNKMAIGVLGALQPLMHALRSESERTRHDSALALYHLTLVQSNRVKLVKLGVVPTLLSMVANGNLASRVLLVLCNVA ACVEGRTAMLDGNAVEILVDLLRRNKFDSEATRENCVAALYALSHGSLRFKGLAKEAKAVEVLREIEETGTERAREKARR VLQTMRAGEDQPGSQFDSLFESDGLPRTRHRAAGAWNTNHVNSTTF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 520 | 520 | 5.5E-237 | – | |
| PANTHER | 1 | 520 | 520 | 5.5E-237 | – | |
| Gene3D | 6 | 96 | 91 | 6.5E-15 | ||
| SUPERFAMILY | 12 | 93 | 82 | 9.89E-18 | – | |
| ProSiteProfiles | 23 | 96 | 74 | 31.501 | ||
| Pfam | 25 | 92 | 68 | 2.8E-11 | ||
| SMART | 27 | 89 | 63 | 5.1E-15 | ||
| CDD | 29 | 76 | 48 | 8.15011E-13 | – | |
| Gene3D | 201 | 490 | 290 | 1.7E-38 | ||
| SUPERFAMILY | 213 | 489 | 277 | 4.68E-35 | ||
| SMART | 281 | 321 | 41 | 6.2 | ||
| Pfam | 322 | 361 | 40 | 1.4E-5 | ||
| SMART | 322 | 362 | 41 | 4.2 | ||
| SMART | 363 | 401 | 39 | 180.0 | ||
| SMART | 402 | 445 | 44 | 0.027 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi1g1v0183700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…