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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0191800 |
| Transcript ID | LotjaGi1g1v0191800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dynamin family protein; TAIR: AT1G60500.1 Dynamin related protein 4C; Swiss-Prot: sp|Q9ZP55|DRP4C_ARATH Dynamin-related protein 4C; TrEMBL-Plants: tr|G7L7C0|G7L7C0_MEDTR Dynamin 4C-like protein; Found in the gene: LotjaGi1g1v0191800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:37920870..37923351) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGCTCAAATAAAGTGCTTCCTTTCTTCAAGATATACCAACCGACCCTCTAGGCTCTATCACTTCATTTGGTTCCTTA TAAATATGCATTTGAGCTAAAGCTAGCTCTCATCTTAAGCATACCAAACAGTTCTTATATCCCTTTTGCACCTTCTCAGT TTACAACTTGTGTCCACTAAAAATGGTTTCAGCAAAGAAAACTAGGTCTTCCACTAAAAATGATCTTTTAGTCCATGAAG AATTAGAACAATCTCAAGAATCTATTTCTGTTGTTGCACCAATTGTGTCCTCATACAATGAGAAAATTCGCCCTGTTCTT GATGCTGTTGAAAACCTGAGGCGCCTCAACATTTCTAAAGAGGGAATACAACTTCCCACCATTGTGGTTGTTGGTGATCA ATCTTCTGGGAAATCCAGTGTGCTTGAATCTCTTGCTGGTATTAGTTTACCCCGTGGCCAAGGCATATGCACCAGGGTCC CTTTGATCATGAGGCTCCAAAATCACACTCTCCCAAAGCCAGAACTTATTTTGGAGTTCAATGGCAAAACCATTTCAACA GATGAAGCACATGTCTCTGATGCAATAAACCTTGCCACAGAGGAGCTTGCTGGTTCTGGCAAAGGGATTTCCAACAACCC TTTGACTCTTCTGGTGAAGAAGAATGGTGTTCCTGATCTTGCCATGGTTGATCTTCCAGGCATTACTAGGGTGCCTGTTC ATGGCCAACCTGAGAATATTTATGACCAGATTAAGGATATTATCATGGAGTACATTACTCCTGATGAAAGCATCATCTTG AATGTTCTTTCAGCAACTGTTGATTTCACCACATGTGAGTCCATTAGGATGTCACAGACTGTGGATAAAACTGGTTTGAG GACACTTGCTGTGGTTACAAAGGCTGATAAGTCCCCTGAAGGCTTGCTAGAGAAGGTGACAGCTGATGATGTTAACATTG GTCTTGGCTATGTTTGTGTCAGAAACCGCATTGGAGAGGAGTCTTATGAGGAAGCAAGAATTGAAGAATTGAAGCTGTTT GAGACTCACCCTCTTCTTTCCAAAATAGACAAATCTATTGTGGGTATTCCTGTTTTGGCTCAAAAGCTTGTTCAGGTTCA AGCAATGATCATATCTAAAACTCTGCCAGATATTGTTAAGAAAATCAATGAAAAGCTTGCTAGTAATTTATCTGAGTTAG AGAAATTGCCTCCCAACTTGTCATCAGTGGCTGATGCTATGACAACTTTCTTGCATATTATTGGGTTGTCTAAAGATTCT CTGAGAAAAATTCTTATAGCAGGAGATTTTGGGGAGTACCCTGAAGACAAACACATGCATTGCACTGCTCGCTTGGTGGA GATGCTTGATTCGTTCGCAAGTGATCTTGATGGAAGTTCTGAAAGTGATCCTGCCAAGGATTTTCTTGTGGAAGAGATAC AGATGTTGGAAGAAGCAAAGATGATTGGTCTTCCAAACTTCATGCCAAGAACTGCTTTCCTTACTATACTAAAGAGGAAA GTGAATTCCATTGCAAAGAAACCAATTGATTTTGTTGAAAAAGTGTGGGACTATCTGGAAACTGTTGTGGTTTATGTATT AGCGCTCCATTCATTAAATTATTATCAGCTTCAGCTTTCAGCAACAAGAGCAGGGAATAGTCTTATTGGTAAGAAGAAGC AATATTCAATCAAACATGTGCTGCAATCTATTGAAATGGAGAAGAACACGGATTACACTTGTAATCCTGAGTACTTGCAG GAATATGATAAGCTGATATCTCGTCGAGATTCTTTTTTGAGGGAAGTATTGGATGTTAAGAAGCCGTCAAAAGTAAAGCT TGAAGGTGTTGGGGTAATTGATGTTGGTTATTTGAGGGATCACACTAAAATTCTTAGCCAAGCCTTTGATTTGAAAGTGA GAATGATAGCTTATTGGAAAATTGTGCAGAGGAGGCTGATTGACTCTATGGCATTGCATTTAATGTTGAGTATCAAAGAC CTTGTAAACCATGAGCTTGAAAAGGAGATTTGTCATGATTTGATGTCTCCAGATTGCGGTTGGATTGAGAGGCTGTTGGA GGAGTCTCCTTCAATTTCTGGGAAGAGAGTGAAGCTTAGCAGAAGTGTTAAAGTACTCCAAGAAAGCAAGGAGACAGTAG CTAATATCATGGAGAGAATCAGAATGGTGACGGTAAGTTGTAATGCTCCATGTTCTGGAAGGCATCCCGTCCTCTGATCC AAGCTATTCTACCATTTTTGAAAGTTTTGAAGGTCACCTTTTCTTTTCTTGTTTGGTTATGTCATTTTGAAGGTTGTTCA CTTTTGATGTTTTATGATCGACACATGTGTTGTTGATTCGATCATTTTTGGATGTCTTAGTAGTTTGATTTTTTTGTTGG GTTGATGTTATTGTAAAATGTCAAGGTTGTTTTTCATGTTATGGACAACTCTGTTAATTGAATCTATGGTGGTTACTATG TA
CDS sequence (LotjaGi1g1v0191800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTCAGCAAAGAAAACTAGGTCTTCCACTAAAAATGATCTTTTAGTCCATGAAGAATTAGAACAATCTCAAGAATC TATTTCTGTTGTTGCACCAATTGTGTCCTCATACAATGAGAAAATTCGCCCTGTTCTTGATGCTGTTGAAAACCTGAGGC GCCTCAACATTTCTAAAGAGGGAATACAACTTCCCACCATTGTGGTTGTTGGTGATCAATCTTCTGGGAAATCCAGTGTG CTTGAATCTCTTGCTGGTATTAGTTTACCCCGTGGCCAAGGCATATGCACCAGGGTCCCTTTGATCATGAGGCTCCAAAA TCACACTCTCCCAAAGCCAGAACTTATTTTGGAGTTCAATGGCAAAACCATTTCAACAGATGAAGCACATGTCTCTGATG CAATAAACCTTGCCACAGAGGAGCTTGCTGGTTCTGGCAAAGGGATTTCCAACAACCCTTTGACTCTTCTGGTGAAGAAG AATGGTGTTCCTGATCTTGCCATGGTTGATCTTCCAGGCATTACTAGGGTGCCTGTTCATGGCCAACCTGAGAATATTTA TGACCAGATTAAGGATATTATCATGGAGTACATTACTCCTGATGAAAGCATCATCTTGAATGTTCTTTCAGCAACTGTTG ATTTCACCACATGTGAGTCCATTAGGATGTCACAGACTGTGGATAAAACTGGTTTGAGGACACTTGCTGTGGTTACAAAG GCTGATAAGTCCCCTGAAGGCTTGCTAGAGAAGGTGACAGCTGATGATGTTAACATTGGTCTTGGCTATGTTTGTGTCAG AAACCGCATTGGAGAGGAGTCTTATGAGGAAGCAAGAATTGAAGAATTGAAGCTGTTTGAGACTCACCCTCTTCTTTCCA AAATAGACAAATCTATTGTGGGTATTCCTGTTTTGGCTCAAAAGCTTGTTCAGGTTCAAGCAATGATCATATCTAAAACT CTGCCAGATATTGTTAAGAAAATCAATGAAAAGCTTGCTAGTAATTTATCTGAGTTAGAGAAATTGCCTCCCAACTTGTC ATCAGTGGCTGATGCTATGACAACTTTCTTGCATATTATTGGGTTGTCTAAAGATTCTCTGAGAAAAATTCTTATAGCAG GAGATTTTGGGGAGTACCCTGAAGACAAACACATGCATTGCACTGCTCGCTTGGTGGAGATGCTTGATTCGTTCGCAAGT GATCTTGATGGAAGTTCTGAAAGTGATCCTGCCAAGGATTTTCTTGTGGAAGAGATACAGATGTTGGAAGAAGCAAAGAT GATTGGTCTTCCAAACTTCATGCCAAGAACTGCTTTCCTTACTATACTAAAGAGGAAAGTGAATTCCATTGCAAAGAAAC CAATTGATTTTGTTGAAAAAGTGTGGGACTATCTGGAAACTGTTGTGGTTTATGTATTAGCGCTCCATTCATTAAATTAT TATCAGCTTCAGCTTTCAGCAACAAGAGCAGGGAATAGTCTTATTGGTAAGAAGAAGCAATATTCAATCAAACATGTGCT GCAATCTATTGAAATGGAGAAGAACACGGATTACACTTGTAATCCTGAGTACTTGCAGGAATATGATAAGCTGATATCTC GTCGAGATTCTTTTTTGAGGGAAGTATTGGATGTTAAGAAGCCGTCAAAAGTAAAGCTTGAAGGTGTTGGGGTAATTGAT GTTGGTTATTTGAGGGATCACACTAAAATTCTTAGCCAAGCCTTTGATTTGAAAGTGAGAATGATAGCTTATTGGAAAAT TGTGCAGAGGAGGCTGATTGACTCTATGGCATTGCATTTAATGTTGAGTATCAAAGACCTTGTAAACCATGAGCTTGAAA AGGAGATTTGTCATGATTTGATGTCTCCAGATTGCGGTTGGATTGAGAGGCTGTTGGAGGAGTCTCCTTCAATTTCTGGG AAGAGAGTGAAGCTTAGCAGAAGTGTTAAAGTACTCCAAGAAAGCAAGGAGACAGTAGCTAATATCATGGAGAGAATCAG AATGGTGACGGTAAGTTGTAATGCTCCATGTTCTGGAAGGCATCCCGTCCTCTGA
Protein sequence (LotjaGi1g1v0191800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSAKKTRSSTKNDLLVHEELEQSQESISVVAPIVSSYNEKIRPVLDAVENLRRLNISKEGIQLPTIVVVGDQSSGKSSV LESLAGISLPRGQGICTRVPLIMRLQNHTLPKPELILEFNGKTISTDEAHVSDAINLATEELAGSGKGISNNPLTLLVKK NGVPDLAMVDLPGITRVPVHGQPENIYDQIKDIIMEYITPDESIILNVLSATVDFTTCESIRMSQTVDKTGLRTLAVVTK ADKSPEGLLEKVTADDVNIGLGYVCVRNRIGEESYEEARIEELKLFETHPLLSKIDKSIVGIPVLAQKLVQVQAMIISKT LPDIVKKINEKLASNLSELEKLPPNLSSVADAMTTFLHIIGLSKDSLRKILIAGDFGEYPEDKHMHCTARLVEMLDSFAS DLDGSSESDPAKDFLVEEIQMLEEAKMIGLPNFMPRTAFLTILKRKVNSIAKKPIDFVEKVWDYLETVVVYVLALHSLNY YQLQLSATRAGNSLIGKKKQYSIKHVLQSIEMEKNTDYTCNPEYLQEYDKLISRRDSFLREVLDVKKPSKVKLEGVGVID VGYLRDHTKILSQAFDLKVRMIAYWKIVQRRLIDSMALHLMLSIKDLVNHELEKEICHDLMSPDCGWIERLLEESPSISG KRVKLSRSVKVLQESKETVANIMERIRMVTVSCNAPCSGRHPVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 30 | 668 | 639 | 0.0 | – | |
| PANTHER | 30 | 668 | 639 | 0.0 | ||
| SUPERFAMILY | 38 | 331 | 294 | 1.13E-55 | ||
| SMART | 39 | 277 | 239 | 1.9E-51 | ||
| Gene3D | 55 | 338 | 284 | 4.6E-79 | – | |
| ProSiteProfiles | 61 | 322 | 262 | 60.033 | ||
| CDD | 62 | 322 | 261 | 1.38945E-84 | ||
| PRINTS | 64 | 82 | 19 | 1.2E-32 | ||
| Pfam | 67 | 241 | 175 | 1.2E-36 | ||
| PRINTS | 88 | 105 | 18 | 1.2E-32 | ||
| PRINTS | 160 | 177 | 18 | 1.2E-32 | ||
| PRINTS | 210 | 228 | 19 | 1.2E-32 | ||
| PRINTS | 229 | 245 | 17 | 1.2E-32 | ||
| Pfam | 255 | 530 | 276 | 7.0E-54 | ||
| Gene3D | 349 | 642 | 294 | 3.9E-11 | – | |
| SMART | 566 | 662 | 97 | 0.001 | ||
| Pfam | 573 | 661 | 89 | 1.3E-11 | ||
| ProSiteProfiles | 574 | 667 | 94 | 18.13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi1g1v0191800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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