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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0193500 |
Transcript ID | LotjaGi1g1v0193500.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Eukaryotic translation initiation factor 5A; TAIR: AT1G69410.1 eukaryotic elongation factor 5A-3; Swiss-Prot: sp|P24922|IF5A2_NICPL Eukaryotic translation initiation factor 5A-2; TrEMBL-Plants: tr|I3SDR1|I3SDR1_LOTJA Eukaryotic translation initiation factor 5A; Found in the gene: LotjaGi1g1v0193500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:38302068..38305750) extracted from Lotus japonicus Gifu genome v1.2.
TAGAAGGGTAAATATGAAATTTCAATCCTAAATTTACTCACCCACTTTAGCAACTTTCCCAGGAATCTTGCATACCCACC CTTGAAGCCAGGAATGCAGAGTTGCTGAAATGAACTAAAATCTTTTCCCCGAGAATATCTCATGCCTGGGTATCTTTTTT CCTAATCTTCTACCAAACAAAGGAATCTTCATTCCCACACCCATCATTCCCGGGAATGCTTTATATACCCATGTAACAAA CGCCCCCTAGTAGTTTGCTTAGAGGAATATAAAAAATAAAATAAAAACAAACAGAAAAAGAAAATTAAGATTAGACTTGA TTCAAAAATGTAAGGAAAATATAAAAAAAAAATATTCGATTTGATGTATATAAATCGATTTGGACTTGGTTTTCTCCGCC CCCAATCTCCTCTTCATCTCGTTTCGCAATCTCTGAGTCGAATCGGTGAGTTTACCTGAGTCGAGTCGAGTCGAGTCATG TCGGACGAGGAGCACCACTTCGAGTCAAAGGCCGACGCCGGAGCCTCCAAGACCTATCCTCAGCAAGCCGGCACCATCCG CAAAAGCGGTTACATCGTCATCAAGGGTCGTCCCTGCAAGGTGAAATTCAGATTTCAATCTCATTATTGCGATTCATTGT TTTCTTCATCGTTTCATCAATTTCATTTTGATTTTCATTCATTTTTGTTTCAATTCATTATAATTTTTAGGTTTTGGGAT GTTTTTTTTTTTTGATGATTTGCCCTTTGAGATCTATTGTAAATAGGTTTTAATTTCTGTTGAAAATTGAAATCTGGGTT CCAAAGTGGTTTAATTTTAACTCTCATGTATTGTTGTTGTTGTTAATAATGATGGGTGTTTTGATTTTTGCATTCAATTG ATATTTGATTGGTATGTGTGGTGTTTTGGGCATGGGTTTGATTTTCTGTATGTATACTGATGATGGATTTGTTGTTTGTT TGTTTGTGGATGGATAGGTTGTTGAGGTTTCAACCTCCAAGACTGGTAAGCATGGTCATGCTAAGTGCCACTTTGTTGCA ATTGATATTTTCACTGCCAAAAAGCTTGAGGATATTGTTCCCTCTTCCCACAATTGTGATGTATGACACCTTCTCATGTT TCGTGTTTTTTTTTTGTTCTCGTGAATTCTTTCGCAGATGATGATGACAGTTTAATGGAACTTTTGCTAGATACATAATC TCTTTTTGTATTTTTTTTTTAATTTTTTCAGGTTCCTCATGTGAATCGTACTGACTACCAGTTGATTGATATTGCTGAGG ATGGATTTGTGAGTTGCTATTTGTACTTTTTTTTGTTTTGCTTTTCTTTTTCTAGTTGGACTTAGAGATCATTTGGGTAT AGGCTTGTTGGAGCTTAAGTACTAGAAAATGTACTTGAGCCCTATTTGAAAGAGCTTATTTGAGCTTTATCTTATAGCAT TAGTGCATATGCAAGTGCTTGGGGGAGCTTATGTAAATCAGCATTGCTATATAGTACGAAATTGTTTTTGACGTAGCCAA TCAAAGTATTTCATTGTCAGAAATCATAGGTAGATTATTTGTACAAAAGTAAAATTAAAACTAATCAGGGGAGGCCACCT GTACTATTGCGTTTCGGTATCTGGACATTTAGCATTTTCCTATGTAAATAGCTCATGGCCTACCTATAAGTTATTTTGAG CTTATTTTCTTAAGTTGTTCATATTAGCTTATGAAAAACTTGCTTATGCGTATCTATAACTTATTTTCAGCTTATTTCAA ATAGTTTTCAAATTAGCTTATGAATAAGTACATGTGAGATAAGCGCTTAAATAAGCTGTTTTACCGAACGCAACCTAAAT AAGCTCCGATAAGTGCTATTTAGTTTGCATCCAACCAGGTACTTAGCTATTAGAAACTAATGGTTAATTGAGAAATTAAT TGTTCAGATTTTACGAACATCATAATATGTTATACATGTGTAAAAATACATGATCCCAATGACTGATTTCTTGATCAATG GTTCTGCCATCTAAATTACTCCTCAGTGTATTAGTCAAATTCTTTTTTTTTCCCTTTACTGTAAATCGTTTTTAGTTGAC ATTCCTTTGATTCACCCACTGTTGTTACTGTTGTCTAAATCTTTACTTGAATGATGTCATTTTATAGCTGAGCCTGCTTA CTGAAAATGGGAACACCAAGGATGACCTCAAGCTCCCTACTGATGAGGCTCTACTTTCTCAGGTTTGTGTAAATCTACTG TTTTGTCTTGATGGATTCAGAGTCTGCTAAAGCTTACATGCATTTTAGAAAATATTTCCGATAATTCCTTGTATTGTATC CCTTGATTCTTTTGAATTGAGATAGTGAGATATCCCTGTAATTCCTCTATTATATTCATCTGTTTATTGATTGTTTTTAT TCCTCTAACTGGTTGTCTCCCATTTATAATGTCCAATGCAGATAAAGGATGGGTTTGCTGAGGGTAAGGACCTTGTTTTG AGCGTTATGTCTGCAATGGGTGAGGAGCAGATTTGTGCCCTGAAGGATATTGGGCCAAAGTAAGGCAGTTTGCTGTCTCT TATTTAAGAAAATGATATTTTTGTATCTTGTTAAACTGGACTCTAGTCAGACTAGTCTTGCCAACAATGTTTATGGATGT GACAGAAACTCTGACATTTTTTGCTTTCCATGTTCTCCCCAGATTTTCTTATAAAATACAACAACCCTGTTTTCAGATGG AAAATCCTATTTATTGCCAAGGATTATTTTCCAAACACAAAAAGTTGTAAAATTGTTGCTGTTTTCTTATATCACATTCA GTTTAAATCTTAATTCTTTTAAATTAACTTTGATCCTTAAAACATTTTCACTAAAAGAGTTCTAGAGGACCTCCAGTCCC CAGATTGCTCGTGGGATATTTGTTTACCAAGAAACCCAAGTAAACACTTGCTTAACTAAGAAGAATCAACATTACTGTCA ATCGTTAGTGACTGTGTATACCTTAATTCGAAAAAATCCTAGGTGGTTCTTCACGGGCTTCGGGTCCCTTGCCATTTACA TGCTAGCATCTTCGGCTTGTCACGAGACCAACTAACACATTGGCATAATTAAGTTTCATTGACCTATACATAACAACATG ACATAGTTTATATAAAACACTAACACAAAATAAAGGGTTCTAACTTATTTCATGGGGTTGTTTAACCCTATCATAGATGA ACCAATAATATTTTTTTTTGAGACATGAATTATATATACAGATTTACATGTGAAGGATAATATATAAATTATCTGTCACA TAGTTTACTATCACTTTTCCTTTCATTCTCTCTTCTTTTTCTCTCAATCCAAACAACTCAAAAAACACTTCATTTCCTTT GCTAGATAAGTTAGTGGTAGAAAGAAGTATCAAAATAAGCAAGCTCCCAAATCCAATTGATGATTTTGTCCTAATACCAC CTTCCTTCACCTTCCTTTGCTAGTTAAGTTAGTGGTAGAAAGAAGCATCAAAATCAGCTAGCTCCCAAATCCAATTGATG ATTTTGTCCTAGTAGTACCACCTTCACCGTACATTTCGTTCCACTTTCTTAACTCATTCAGGCTAAGTGCATCATAGGCA ACTGATGGACCCACCTTGGATTTCGATTGAAGAAAATCATCCAAGGTAAGAGGCCTTAATGCAAAACTTTTACCTATATT GCC
CDS sequence (LotjaGi1g1v0193500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGGACGAGGAGCACCACTTCGAGTCAAAGGCCGACGCCGGAGCCTCCAAGACCTATCCTCAGCAAGCCGGCACCAT CCGCAAAAGCGGTTACATCGTCATCAAGGGTCGTCCCTGCAAGGTTGTTGAGGTTTCAACCTCCAAGACTGGTAAGCATG GTCATGCTAAGTGCCACTTTGTTGCAATTGATATTTTCACTGCCAAAAAGCTTGAGGATATTGTTCCCTCTTCCCACAAT TGTGATGTTCCTCATGTGAATCGTACTGACTACCAGTTGATTGATATTGCTGAGGATGGATTTCTGAGCCTGCTTACTGA AAATGGGAACACCAAGGATGACCTCAAGCTCCCTACTGATGAGGCTCTACTTTCTCAGATAAAGGATGGGTTTGCTGAGG GTAAGGACCTTGTTTTGAGCGTTATGTCTGCAATGGGTGAGGAGCAGATTTGTGCCCTGAAGGATATTGGGCCAAAGTAA
Protein sequence (LotjaGi1g1v0193500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDEEHHFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHN CDVPHVNRTDYQLIDIAEDGFLSLLTENGNTKDDLKLPTDEALLSQIKDGFAEGKDLVLSVMSAMGEEQICALKDIGPK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 156 | 156 | 1.8E-123 | – | |
MobiDBLite | 1 | 21 | 21 | - | – | |
Gene3D | 1 | 85 | 85 | 1.7E-45 | ||
PIRSF | 1 | 157 | 157 | 3.2E-66 | ||
PANTHER | 1 | 156 | 156 | 1.8E-123 | ||
SUPERFAMILY | 15 | 93 | 79 | 3.96E-27 | ||
TIGRFAM | 17 | 153 | 137 | 7.5E-41 | ||
ProSitePatterns | 50 | 57 | 8 | - | ||
Pfam | 85 | 154 | 70 | 2.9E-28 | ||
SMART | 85 | 154 | 70 | 8.2E-33 | ||
Gene3D | 86 | 159 | 74 | 2.8E-34 | – | |
SUPERFAMILY | 86 | 156 | 71 | 1.43E-24 | ||
CDD | 86 | 156 | 71 | 1.70423E-31 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
Molecular function | Translation elongation factor activity | Functions in chain elongation during polypeptide synthesis at the ribosome. | ||
Molecular function | Ribosome binding | Interacting selectively and non-covalently with any part of a ribosome. | ||
Biological process | Positive regulation of translational elongation | Any process that activates or increases the frequency, rate or extent of translational elongation. | ||
Biological process | Positive regulation of translational termination | Any process that activates or increases the frequency, rate or extent of translational termination. |
Expression pattern of LotjaGi1g1v0193500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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