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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0196500 |
| Transcript ID | LotjaGi1g1v0196500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptide chain release factor 2; TAIR: AT5G63135.1 transcription termination factor; Swiss-Prot: sp|Q54GU0|ARSB_DICDI Putative transporter arsB; TrEMBL-Plants: tr|A0A151TRF8|A0A151TRF8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0196500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:39743380..39746291) extracted from Lotus japonicus Gifu genome v1.2.
ATTCGAACCATGAGGAGAACTAATTTGCTAATATTGATAGATTTCAAGAAAAGTAAAAGGATAAGCATATTTTTTCTTAA AAGAAAAAAAGACGTTAGCCCAATTAGTGAAGAGAAGGAAGAGTAACAGAGGAACCCAGATGAGATCTAACACAAAACTG GGCTACACTAAGCCCGTAGCCGAACAAGCTTGTTGAAAAGCAAGGTTCGTGTTGCTTGGTTTTCACTTGTTGATTGAGAG GTTGAAAGAGCAGAGGAAAAAAAATGTTGCAGTTTCCGGCGTTTATGACACAATACCCAATGTCGACGAGGACGATTCCG ACGTCGTTTCTGCTACCCTCGCAGTGGCCCCAGCCCCAAAACGAAGAATTCCTCCTCGCCATGGAGGAGTCTGATTTCGA AGAAAAGGTAACTAACTCTCTTCCTCGTCGTCTTCTGTTAGGTTAATTACACCGCTGCATTCAACACGCTGTCGTTTAGA TCCCAAGATTTTAATCTGAAATTTTAGACAAAATTCTTCTCTCCCTTTGAGGGTTATAGATTTAATATGTTTTCGATGTG AATGTTGTTTGAATTTTGCATCTAAAATCTCATATCTTTTGGAAGATCAAAGGTATTAGAGAACAAAACTGATAGTTATT GAATAATCATGTATCTGTATGTATGATAGTTAGAGGTTAAGATGGAGTTAGTTGATTAGTTAGATGCAACTTCTTCATCA TATTAAATTATTTGTTGTCATCTGATATGATTAAAATCTCCTCGGAGAAAAGCAATTATTTTGTGAAATTAGCATTTAGC TTTTTGCTTGAACTAAGCTTTTGAACTAGTTGTATGATTTGTAAACTAGCCACTCAGATAAACTTTAGACTATTCAGCAA TTCATGGTAGCAATTCATGGTTAATCCATGAATTAAGAGTTGAAAATTGAAATATTCAGATCATAGTATGGCTTCAAGGT GCAAGAGAGTGCTCTTGGAATCTCTCTTTTCTTAGTGTACATTTGCTTGCGCACAAGAGAGATGAGAATCGCGTAACTTT GAGAGAAGTTGTGCCTGGTAGCTTATGAGTAGATGTGCGTGAACAATTTGCTTCCAAACATGCACTTATTTTGGGTGCCC ACCAGGGCGTTATTATTTTGGTCCACCGGTGGTCCACTATTTAAAACCGTCAGATCTTGGAATCAAAGAATATTCTATAG ATGAATGGCTTGGATTGAAAGGGTAATAAAGTGGTAAAAGTGTAATATACCACAATCATCAATCAAACCCAAAAAACAAA ATCCCAAACCCAGAAACACATTTAGCTTTGCAAATCACAGAGGCATAAACACAGAAAACAATTGAACACGTGATGGTGGA GCAAAAGCACAAGATCCTCACCTCCCTCTCCAAGCTCGCTGCAGCATATCTCCATCAACCTCTGACCCCAAACCCCCATT AAAAATGAGTCACCCCAGCCTGCTCACCGCATCGGTCAGCGTTGTAGCCACCGTCGCAGAGGTGTCGCGCCACCATCGCC TCTTTCTCCTTCGATCTACAGTTCGCCACCATCACCATCGCAATCACATCTTTCTCCTTCGACACCAAGTTGAAGGTCAC GTATTGTGAGTGATTGAAGATGATTGGTGGTGGTGCTGCTAGAAGAAGAAAAGGGAATTCTGGTAGAGAAGCGTAAGTGA GGAGAGAGATTTCTTTTCTTTTTAGAATTTAATTTTTTTATATATTTTTATTTTATAAATTACTACTACCTTTGTCCACT GGTGGACCAATTTGTAAATTGACCACCCTAGTGGGCACCCTTATTTTGATCTGCATGCTAATAATCCATGTCAATGTTGG TGTGAACCATTGCAGTGCAATGAGATCAGGAAGATGAACAGCAACCTGATTATGATAGGGAAAACCACCAATGAAAATGA GAAGGAAGAATTTGACAACGAGGCCGATGATGATGATGCTGACAATGCAGAGGAATCTGAGGGTGAAGAATTTGAGCAAG AAACTGGTTGAAGAAGTTGCACCTCTATGCTGTTTGTATGCTTGGGTCAAATCTTTGTATTTGAGTGTTGACTCTTTCAT ATCATACTTGCTCTAGTGCTTAATCACGTACTTAACATCTTCACTAGCATAATCGATGCTGCAACAATAGCATGAGTTAA ATGCAGATGAGGTACAGTAGGGGGAGTGCCCCTTCTCCTTTCTTATGAGCAAGTGTCTCTCTTCCGACTATTTAGAAGAA GAAGAGAGCTGTTTAGGTTTTCAAACAAGACAAGAACAATATTGGTCATTTTGACTTTCTTTCCAGGGATAATAACTCAA GTATCAGTCATCCCCATTCTAAGATTTTTAACCAAATACAATGAATGTTTCCTTCTCAACCCTTCTTTTTGTGCTTATTA GGCTCCTCTTGGTACTTTCTAAAGCTTTTGTATCTTATTTTGTGAGCAAAGTCACGTGATATTTTCTTATCTTTGAAATG TTTCTGAATCATTCAAAATCATAATTTAAATCTGACATCACCTAAATCATGAAATTTGTATGCCTCTTCTTTTTATTTTT GGTGATTTTTGTCATCGTTTGTCTGCCTCTTCCGAGTATTGAAAGCCATCAAATGAAGATAATACCGGCCCTACTCGGCT ACCCTGCTGGAGAGAATGGAAATCAAATATGTTTTCGGAGCGGATATAAATTGCTCAGTTTTCATATTATAGATGGACTA ATTGCACGAACTATTGCACGGATACGGATCTTTTTTGTAATACTTTAAAATAATAATCTTGTAATTTGTTTTTTTTATAT TAAAAAAACTCTAGCTATACTTGTATAACCGGTCCCAAACCCGGGTAAAGGGGAGGGTTGTATTAGGCATCAACAACCAA TGTCAAATGAGTTAATATCAAACTCTACAAAT
CDS sequence (LotjaGi1g1v0196500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCAGTTTCCGGCGTTTATGACACAATACCCAATGTCGACGAGGACGATTCCGACGTCGTTTCTGCTACCCTCGCA GTGGCCCCAGCCCCAAAACGAAGAATTCCTCCTCGCCATGGAGGAGTCTGATTTCGAAGAAAAGTGCAATGAGATCAGGA AGATGAACAGCAACCTGATTATGATAGGGAAAACCACCAATGAAAATGAGAAGGAAGAATTTGACAACGAGGCCGATGAT GATGATGCTGACAATGCAGAGGAATCTGAGGGTGAAGAATTTGAGCAAGAAACTGGTTGA
Protein sequence (LotjaGi1g1v0196500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQFPAFMTQYPMSTRTIPTSFLLPSQWPQPQNEEFLLAMEESDFEEKCNEIRKMNSNLIMIGKTTNENEKEEFDNEADD DDADNAEESEGEEFEQETG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 99 | 99 | 1.1E-50 | – | |
| Pfam | 9 | 97 | 89 | 4.1E-21 | ||
| MobiDBLite | 64 | 99 | 36 | - | – | |
| MobiDBLite | 72 | 99 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Anaphase-promoting complex | A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis. Substrate recognition by APC occurs through degradation signals, the most common of which is termed the Dbox degradation motif, originally discovered in cyclin B. | ||
| Biological process | Regulation of mitotic cell cycle spindle assembly checkpoint | Any process that modulates the rate, frequency, or extent of the mitotic cell cycle spindle assembly checkpoint, a cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle. |
Expression pattern of LotjaGi1g1v0196500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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