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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0197600 |
| Transcript ID | LotjaGi1g1v0197600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT2G30780.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|O49343|PP177_ARATH Pentatricopeptide repeat-containing protein At2g30780; TrEMBL-Plants: tr|I1M9X8|I1M9X8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0197600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:40715972..40718875) extracted from Lotus japonicus Gifu genome v1.2.
CCCGTTTCAATTTTTTGAGTCTTGTTTCATTTAGTTGTTCATTTAGTTGTTTGGATTTGTTTGTATGTTTCCTTGAGGAC AAGGAAAATTTTAAGGGGAGGGATATGTTACGCATATAAATAGGGATTGGCCTTGTAAATTAGATATGTTGAATATTGTT GAGATAATGAAACCCCTTCTATCCCTTTGTTCTCTCTTCTCTGCCCCTATTCCCTCTCTTCTCCCTCTCTGAGATTCTGG TTGTATCACAATTCCATCTTCCTCTTCCGTGCGGTGATTTGGATGCTTGACTTTCTCCACAATATTTCTGGATTTCCATG GTAACCTTCAGTTTCTCTTCAATCTTATTGCTAACTCTAATATTTAACGCTTGTATCTTTTTTCAATTTTTGGTTTTGAA TCGAACGTTCTTGTTAATCTAGTGAACTTTGGCTCTCAGAATTGTTCTGTTCTTTCCTCTGGTTTTAACACTTCACAAGG TTAAAAGGATCGGAGAATCTCAATTGGAAGCAAAATTGGGTTTCTCCCTCATAGAAACTGATGGATTTATATTTAAATCT GAAAATTTAAAGAATAACTGGTTGTAGCAGGTAATATTGAGTGGTGCATTGGTGCAGGACATGTGAGGTGCTTCATTGTA GAAGCCACCAGGTAAATCCCAAACAAAGCAAACCAGATTCGTGGTTGCAACTGTACCGATATGAAAAATGGCGTTTGCTA TTAGGGTTTTAAGGACAGTGGGAAAGAGATTTGAGTTCTTTCCAGTTCCTCAGCATTCCTTCTTCTTCTGCAAACATGCA AATTTGAATGCAAATCCCCTTCTCCTCAAACTAGTTCAGGTCTCCAATTCACGCATCAAAACGACACTGGATCAGGAAAT GCCTTCCTTTCAAAGCTCACAACTATCCTGGGATTCGCTTGTTACATCTCTCATCCCTTGTTCTTCTGATAAAGCTCGCT TGGTACTGTTTTTCCAACTCTAGGTTTCATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTA TTATTATCACTTTTGGGGGTATGAATTGATTAAAAACCGTACCAATTGGTTAAGTTCAGTACGAAGAAAAATAAGTAGAC GGGTTTAACATTTGCAAGTATTAATTTGCTGCATTGTAACCAAATGGATTTTTAAGCCCACCAGTTTAGTTTCTTTTACC ATTTTCTTAATGGTAATTAACTGTGTCAATAAACATTGTGATGAATTTTATGTACAATGTGGTTTCAGCTTGTTGATAGT ACCAGTTTGGATACAAACCAAAGAGCACTTATTGAAGTGTTTTTATTGAATTTTCTAGTGGATAAGCTCCAATAAGCCCG TATCCAAACAGGCTCTTATCAGCAGTTATACTTCTTTTATATAGTCTTTTTTTAATTTTTATAACTGGCTTTGCGTGATG AAAAAAAGGGGAAAAGAGTTTTGTTGTTGCTGTTGCTGTTGCTCGATGCCTATAGTCTATAGAGATTGTGATAATCAATG CACTTACATATTATTTTTAACTGGCCAGGTTTTGGAATGGATTTTGGAGAAAATGCTGAAAGAGAATGTAAAAGACCATA GTCTCTTCTCTGAGCTCATCTTGCTATGTGGAAAGCTGAAGAATCTGCCACTAGGAATGCGCGTGTTTACTTCTATGGAG ACTATTGGAGTTAAACCCTCGTCCTTGGTTTTTAATTCCCTTATTAGTGCTTGCTTGTCTTCCAATGACATTGTTACAGC ATATAGTTTATTTGAGATCATGGAGAGTTCAGAAAGTTATAAGCCCGATTTTCACACCTATAATATCTTTATTTCATTTT TTTCCAAGTCAGGGAATGTTGATGACATGTTAGCTTGGTACTCGGCTGAGAAGGCTGCTGGACTCGGTTCTTATCTTCAA ATGTTTGAATCCCTTATATCAGGCTGTGTTAATTCGCGAAACTTTGAGATTGCTGATCAAATTTTTGAAGAAATGATGGT TTCTGAAATCATACCTAGTGTATCCATACTGGAAAGTATGCTTAAAGGGCATTGCAAACAAAAGAGTTTGGGTCGAGCTG AGGAGTTCTTCAGGTTCGTGCTAGATACCAGGTGGGAAGTCAGCGAAATCATGGCTGAGATGTTAGTAGCATTGTATCTT GAACAAGGGCGTGTGGAAAAGATGGAGGAGCTACTCGAAACTATGACAAAGCCATGTCTAGTCAAAACTGGCGTGCTCTC ACAAATCCATTGTGGGATTGTGAGGATGTATGCCATGTTAGATAGGTTGGATGATGTAGAGTTTGCTGTGGGCAGAATGC TGAAACAAGGGTTGTCGTTCACATGTGCGGATGATGTTGAAAAAGTTATCTGCTCATATTTTAGAAGGGAAGCTTATGAT AGACTAGACATGTTCTTAGAATGTTTGGAGTGTTGCTATGTGCTTACCAGATCAACTTATGACTTGTTGATTTCTGGCTA TAAGAGAGCAAGCTTACATGAAAAAGTAGATTCAGTGTTGGAAGACATGAAATCAGCGGGACTAGTGTGAGGATAAAACT TACCTACAGGACATCAGATATTGTCTGTGTTGTTGCCCAATAAAAACTTAGCTACCCACTTTTTAAATTTGATAATTTCC TCAACTTCTCATTTTATAGCTGTGTCACATTGTAATTTCCTCAACTTCTCAGTAAAGACTAAACATTTGGAACTGTATCA AAGTTTTGTCTTGAGAATAACAGAGCTAATGTGATGATGGCAGATGAGCTCCATTAAGCTCCTTAATTTTTACAACAGGT AGCAATTTGTGTTGTAACCAAGCTATGAGTTCAGTAGTTTACAATCAATGAAATATTACAAAAGATGTCACTTTACCACT TGCTGTCGATCAAGATAACATGAG
CDS sequence (LotjaGi1g1v0197600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTTTGCTATTAGGGTTTTAAGGACAGTGGGAAAGAGATTTGAGTTCTTTCCAGTTCCTCAGCATTCCTTCTTCTT CTGCAAACATGCAAATTTGAATGCAAATCCCCTTCTCCTCAAACTAGTTCAGGTCTCCAATTCACGCATCAAAACGACAC TGGATCAGGAAATGCCTTCCTTTCAAAGCTCACAACTATCCTGGGATTCGCTTGTTACATCTCTCATCCCTTGTTCTTCT GATAAAGCTCGCTTGGTTTTGGAATGGATTTTGGAGAAAATGCTGAAAGAGAATGTAAAAGACCATAGTCTCTTCTCTGA GCTCATCTTGCTATGTGGAAAGCTGAAGAATCTGCCACTAGGAATGCGCGTGTTTACTTCTATGGAGACTATTGGAGTTA AACCCTCGTCCTTGGTTTTTAATTCCCTTATTAGTGCTTGCTTGTCTTCCAATGACATTGTTACAGCATATAGTTTATTT GAGATCATGGAGAGTTCAGAAAGTTATAAGCCCGATTTTCACACCTATAATATCTTTATTTCATTTTTTTCCAAGTCAGG GAATGTTGATGACATGTTAGCTTGGTACTCGGCTGAGAAGGCTGCTGGACTCGGTTCTTATCTTCAAATGTTTGAATCCC TTATATCAGGCTGTGTTAATTCGCGAAACTTTGAGATTGCTGATCAAATTTTTGAAGAAATGATGGTTTCTGAAATCATA CCTAGTGTATCCATACTGGAAAGTATGCTTAAAGGGCATTGCAAACAAAAGAGTTTGGGTCGAGCTGAGGAGTTCTTCAG GTTCGTGCTAGATACCAGGTGGGAAGTCAGCGAAATCATGGCTGAGATGTTAGTAGCATTGTATCTTGAACAAGGGCGTG TGGAAAAGATGGAGGAGCTACTCGAAACTATGACAAAGCCATGTCTAGTCAAAACTGGCGTGCTCTCACAAATCCATTGT GGGATTGTGAGGATGTATGCCATGTTAGATAGGTTGGATGATGTAGAGTTTGCTGTGGGCAGAATGCTGAAACAAGGGTT GTCGTTCACATGTGCGGATGATGTTGAAAAAGTTATCTGCTCATATTTTAGAAGGGAAGCTTATGATAGACTAGACATGT TCTTAGAATGTTTGGAGTGTTGCTATGTGCTTACCAGATCAACTTATGACTTGTTGATTTCTGGCTATAAGAGAGCAAGC TTACATGAAAAAGTAGATTCAGTGTTGGAAGACATGAAATCAGCGGGACTAGTGTGA
Protein sequence (LotjaGi1g1v0197600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFAIRVLRTVGKRFEFFPVPQHSFFFCKHANLNANPLLLKLVQVSNSRIKTTLDQEMPSFQSSQLSWDSLVTSLIPCSS DKARLVLEWILEKMLKENVKDHSLFSELILLCGKLKNLPLGMRVFTSMETIGVKPSSLVFNSLISACLSSNDIVTAYSLF EIMESSESYKPDFHTYNIFISFFSKSGNVDDMLAWYSAEKAAGLGSYLQMFESLISGCVNSRNFEIADQIFEEMMVSEII PSVSILESMLKGHCKQKSLGRAEEFFRFVLDTRWEVSEIMAEMLVALYLEQGRVEKMEELLETMTKPCLVKTGVLSQIHC GIVRMYAMLDRLDDVEFAVGRMLKQGLSFTCADDVEKVICSYFRREAYDRLDMFLECLECCYVLTRSTYDLLISGYKRAS LHEKVDSVLEDMKSAGLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 417 | 417 | 1.3E-178 | – | |
| PANTHER | 1 | 417 | 417 | 1.3E-178 | – | |
| Gene3D | 53 | 203 | 151 | 3.2E-18 | ||
| ProSiteProfiles | 101 | 135 | 35 | 8.21 | ||
| Pfam | 135 | 182 | 48 | 8.2E-8 | ||
| ProSiteProfiles | 136 | 166 | 31 | 7.739 | ||
| TIGRFAM | 139 | 172 | 34 | 0.0011 | ||
| ProSiteProfiles | 172 | 206 | 35 | 8.254 | ||
| TIGRFAM | 174 | 196 | 23 | 0.0023 | ||
| Gene3D | 204 | 320 | 117 | 1.7E-14 | ||
| ProSiteProfiles | 207 | 241 | 35 | 8.89 | ||
| Pfam | 208 | 244 | 37 | 0.0029 | ||
| TIGRFAM | 211 | 242 | 32 | 1.7E-5 | ||
| ProSiteProfiles | 242 | 276 | 35 | 6.971 | ||
| ProSiteProfiles | 277 | 311 | 35 | 6.292 | ||
| ProSiteProfiles | 315 | 349 | 35 | 5.152 | ||
| ProSiteProfiles | 385 | 418 | 34 | 9.328 | ||
| Pfam | 387 | 417 | 31 | 3.9E-4 | ||
| TIGRFAM | 388 | 418 | 31 | 2.2E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0197600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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