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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0199400 |
| Transcript ID | LotjaGi1g1v0199400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G80270.1 PENTATRICOPEPTIDE REPEAT 596; Swiss-Prot: sp|Q9C977|PP135_ARATH Pentatricopeptide repeat-containing protein At1g80270, mitochondrial; TrEMBL-Plants: tr|I1JB37|I1JB37_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0199400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:42194290..42198088) extracted from Lotus japonicus Gifu genome v1.2.
TAAGCGTGGTGTTGGTTCATTTCCATCAACCCTCGTTTACGCTTCCCTGCTCTCACCATGTGGGCTCTTCGTCGAGCTTC GCTTCGTCTCAGGTAACAGATTTTCTTTCATTCACGTATATATTTTGAATAAAACTCGTGGTTGAGATTGGTTGAGATCC CTTGATTCTGCCCATTTCTTTGGTGTTACTTTTACGATTTCACATCTTCATTTTGAGTCATTTTTTATTTATTTATAATT TCTCATCATTTTTATAAGTGTACAACGTGAATGATTCGTGCTGTGTCTATTGTCTTTGGATTTGGTACTATCTGGCGCAT GTGCTAGGTGCCTAATTTCTTATTGGTTGAATTCCAAGTTGGATTTGCTAAATCATATTGTTCCTCTTCCAATTTGATGG GTCTCACTCATTATTTTTTGGAGACCACATGAATTTCAACTAATAATATAGAGGGTGTTGGAAGGATATAGTGTTGGTAG CACCTATAAGAGATTATGCTAACTGTTTATTCTAATTTGTTTGTAGGAGTCCAATACTTAATGTAGGTGCTTATCGGGCT TCTTGTGCTAAATTAACGTCGCCAACCACTTATGTGGAAGATGAGGCTGGTATCCTTGAGTCTCATCCAATAAGATATGG TAGATTTCTTTCAACGAGCAGATTTTACCACGGTGGTCGTGCCTCCCTGAACTTTACTGTAAGCAGGCGTGAACTTTCGT CACAAGCTGATGCTAGTAGCACCAAAGAGGATGATGATATAGAAGATGGATTGTGTGAGCAGGAGGCACATGGGGATACT AATGAAAATGAATCTGAAGTAGACTTGTCTGATGATGATGATGGTAGTGGGGAACCACACAACGAGCTGTCAGAAACTGA GATTGATCCCACTGTGAAAAAGCAACACAGAAAGACTGAATCACAACTTTTCAAGGCGATAATAAGTAGTCCAGGTGTGT CTGTTCAGTCAGCTCTGGAAAAGTGGGTTGAAAAAGGGAAGGAACTAAACAGGCCAGAGATCTCATTGGCCTTTGTTAAT CTTCGGAAGCGTAAAATGTATGGGAGGGCTTTGCAGGTAAATTGATCAAACTTGTATCTGCGTCCAATTTAGACAAATAA ACATATAAAGTATTATGCTGATAAATTTAGGTTGTTATCGCTCCCTCTTTCTGTATGTTTGATGCGTGTTTGTAATTTTT CTCGGTTATGTTGTTTACCTGAAACTCTGTCTGAGAAAATAATACTGGTGTTTGATATCTTGCTATTCTTGTTTAGCCTT CCACTTCCTCCTTTATAGATCAATTATAATGGTTTCCATGTATCCTGAATATACCCATCGGAAATCGGCTGTTGCGCCTG CTGCTAATTTTTCTACTATAATTTTACAAGACAGGAAAAGTTCCTTGATGTTAATGATGAAAGTTTCCCCATGAAGCTGA CTAGGTATTCATTCAAACAAGAATATTTGTTACATGATTGAAATTTTAGCAGTGGACTGGTTGAAAATATTTTACTATTC TGGCTAGTGGTTTGATACTGAGGTTGAAGTTAAACATCTATTTATTTGTATTTAAATTTTAGTTTTTCTGGGTTAATTTT GAGTCAGATCAAAATTGGATTATAGGCTTCTCCGGCCAGTAATATTCAACTTGATTCTGTGCCTTTCTATCTACCCTTTC TATCTTGCAGTCTTTTTGTAAGTTCTACATGTAATAAAGCCTTAGTACCCTCTACTTCTGGACCCTTGGTTGCTGTTAAG AGTGTTGGAATTGGTTGGCTTGGGTCCAACACAGTTGTTATCTCCTTGCCTATTTATACTAATATTGAGTTGTTGGGCTA AACAATTTCCAGAGTTTGGGTATGACAGTGGTCTGTTGATATAATGATAGTTAAGCGGAAACGTAGGTTCTATGTGCTGG ATTGCAATTTTGTCTACCATGATTGTATTCATTTTCTTCCCTGAACTTATCCTTATTGGGTTAGTGAGGAAATTCTTATG CAAAAAGACAGATTTCTTCCTTGATTTTAGCCAGCTCTATCATTCATGTTGCAGATTCTTTTAGCAGCATGTAGGTTATC TGCTGTTGATCATGTAGGCATATTTTCTTAAGTATATGTTACAACTTAAAACTGATTGACATTGTCGATGTATACCTTGT TTGAATTTCCATTTTTACAATGTGATGTTTTTAGTGTAATCTAATCTTCGTTTGTTGTTTGGTACTATAGCTCTTACAGT GGCTAGAGAAAAACAAGAAGCTTGAATTTGCTGAGAAAGATTATGCTTCTGTACTTGATTTAATTGCCAAAGTAAGTGGC CTCTTTAGGGCAGAAAATTACATCAAGAAGGTTCCAGAATCTTTTAGAGGCGAGTTGTTATACAGAACATTACTGGCTAA CTATGCTAGTCAGAACAATTTGAAGAAAACTGAGGAAACATTCAACAAAATGAGGGACTTGGATCTCCCTATCACAGCAT TTGCTTGTAACCAGTTGCTTCTTATTTACAAAAAGGTTGACAAGAAGAAAATATCTGATGTGTTACTGTTGATGGAAAAA GAGAATGTGAAACCTTCTCATTTCACTTATAAAATCTTAATAGACACAAAGGGTCAGAGTAATGATATTGCTGGAATGGA ACAAATTGTTGAGACAATGAAGGCCGAAGGCATTGAACCAAACCATCAAGTACAAGCAGCACTGGCTAGGTATTACACCT CAGCTGGGCTTAAAGAAAAAGCGGAAGCTATACTCCAGGAGATTGAAGGAGAAAACTTGAGAGACAATCTATGGGTATGC CCGACTTTGCTCCGCCTTTATGCAAACTTGGGAAAGGCTGATGAAGTGGAGAGAATCTGGAAGGTCGTCGAGTCGAAGCC TGGAATTGACGTCTGCCTTGCTGCAGTTGAAGCTTGGGGAAGGTTGCAGAAAATTGAAGAAGCAGAAGCTATTTTTGAGA TGATGGCAAATAAATGGAAACTCTCCTCAAAGAACTACTCGGTGCTCTTGAAGGTGTATGCAAATCATAAGATGCTAAAG AAGGGTAAGGATCTTATTCAGCGAATGGGAGAAAATGGGTGCAAGATAGGCCCATTGACCTGGGATTCGCTTGTGAAACT TTATACCCAAGCAGGGGAAGTTGAGAAGGCAGATGCTGTTCTGCAGAAAGTAATGGAGCAGAGTCGAATGACGCCGATGT TCAATACTTATATGGCGGTCATGGAGCAGTATGCAAAGAGGGGTGATGTCCATAATTCAGAAAAGATTTTCCACAGAATG AGACAAGCTGGTTATACTTCTCGAATTACTCCGTTTCAAGTTCTGGTACAGGCCTATATAAAAGCCAAGGTTCCAGCATA TGGGATCAGGGACAGAATGAAAGCTGATAACGTGTTTCCCAACAATACTTTGGCTAAACAGTTGGCTCAAGTTGATGCAT TTAAGAAAACTGCAGTTTCCGATTTGCTTGATTGAGGAAGTTAGCATGTTTTTACTCTTCAAGTGCAATTATCTCAGTCA GTTCATTAGTAACATTGAACACTCCAAATTCGTCTGTTTTGTCTTGTATTCCAAATTCGTTTGTTTTCTCTTTGTTACTG CATAAGTATTGGTTTTATGATTTTATGGCGTACATCAGTTGAAAAGCTAACTTATTTATGTAGATGCAAATGAAATGAAC GCTTAATGTAATAACTTTGAACTACATAATTTGTAACACCCTCTAAACCCCGCATAATAATATATCATAAATCAGAGTAA AATGCATAACACAGAGGGTGTCACACTTATTCTCCAGAA
CDS sequence (LotjaGi1g1v0199400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGGCTCTTCGTCGAGCTTCGCTTCGTCTCAGGAGTCCAATACTTAATGTAGGTGCTTATCGGGCTTCTTGTGCTAA ATTAACGTCGCCAACCACTTATGTGGAAGATGAGGCTGGTATCCTTGAGTCTCATCCAATAAGATATGGTAGATTTCTTT CAACGAGCAGATTTTACCACGGTGGTCGTGCCTCCCTGAACTTTACTGTAAGCAGGCGTGAACTTTCGTCACAAGCTGAT GCTAGTAGCACCAAAGAGGATGATGATATAGAAGATGGATTGTGTGAGCAGGAGGCACATGGGGATACTAATGAAAATGA ATCTGAAGTAGACTTGTCTGATGATGATGATGGTAGTGGGGAACCACACAACGAGCTGTCAGAAACTGAGATTGATCCCA CTGTGAAAAAGCAACACAGAAAGACTGAATCACAACTTTTCAAGGCGATAATAAGTAGTCCAGGTGTGTCTGTTCAGTCA GCTCTGGAAAAGTGGGTTGAAAAAGGGAAGGAACTAAACAGGCCAGAGATCTCATTGGCCTTTGTTAATCTTCGGAAGCG TAAAATGTATGGGAGGGCTTTGCAGCTCTTACAGTGGCTAGAGAAAAACAAGAAGCTTGAATTTGCTGAGAAAGATTATG CTTCTGTACTTGATTTAATTGCCAAAGTAAGTGGCCTCTTTAGGGCAGAAAATTACATCAAGAAGGTTCCAGAATCTTTT AGAGGCGAGTTGTTATACAGAACATTACTGGCTAACTATGCTAGTCAGAACAATTTGAAGAAAACTGAGGAAACATTCAA CAAAATGAGGGACTTGGATCTCCCTATCACAGCATTTGCTTGTAACCAGTTGCTTCTTATTTACAAAAAGGTTGACAAGA AGAAAATATCTGATGTGTTACTGTTGATGGAAAAAGAGAATGTGAAACCTTCTCATTTCACTTATAAAATCTTAATAGAC ACAAAGGGTCAGAGTAATGATATTGCTGGAATGGAACAAATTGTTGAGACAATGAAGGCCGAAGGCATTGAACCAAACCA TCAAGTACAAGCAGCACTGGCTAGGTATTACACCTCAGCTGGGCTTAAAGAAAAAGCGGAAGCTATACTCCAGGAGATTG AAGGAGAAAACTTGAGAGACAATCTATGGGTATGCCCGACTTTGCTCCGCCTTTATGCAAACTTGGGAAAGGCTGATGAA GTGGAGAGAATCTGGAAGGTCGTCGAGTCGAAGCCTGGAATTGACGTCTGCCTTGCTGCAGTTGAAGCTTGGGGAAGGTT GCAGAAAATTGAAGAAGCAGAAGCTATTTTTGAGATGATGGCAAATAAATGGAAACTCTCCTCAAAGAACTACTCGGTGC TCTTGAAGGTGTATGCAAATCATAAGATGCTAAAGAAGGGTAAGGATCTTATTCAGCGAATGGGAGAAAATGGGTGCAAG ATAGGCCCATTGACCTGGGATTCGCTTGTGAAACTTTATACCCAAGCAGGGGAAGTTGAGAAGGCAGATGCTGTTCTGCA GAAAGTAATGGAGCAGAGTCGAATGACGCCGATGTTCAATACTTATATGGCGGTCATGGAGCAGTATGCAAAGAGGGGTG ATGTCCATAATTCAGAAAAGATTTTCCACAGAATGAGACAAGCTGGTTATACTTCTCGAATTACTCCGTTTCAAGTTCTG GTACAGGCCTATATAAAAGCCAAGGTTCCAGCATATGGGATCAGGGACAGAATGAAAGCTGATAACGTGTTTCCCAACAA TACTTTGGCTAAACAGTTGGCTCAAGTTGATGCATTTAAGAAAACTGCAGTTTCCGATTTGCTTGATTGA
Protein sequence (LotjaGi1g1v0199400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWALRRASLRLRSPILNVGAYRASCAKLTSPTTYVEDEAGILESHPIRYGRFLSTSRFYHGGRASLNFTVSRRELSSQAD ASSTKEDDDIEDGLCEQEAHGDTNENESEVDLSDDDDGSGEPHNELSETEIDPTVKKQHRKTESQLFKAIISSPGVSVQS ALEKWVEKGKELNRPEISLAFVNLRKRKMYGRALQLLQWLEKNKKLEFAEKDYASVLDLIAKVSGLFRAENYIKKVPESF RGELLYRTLLANYASQNNLKKTEETFNKMRDLDLPITAFACNQLLLIYKKVDKKKISDVLLLMEKENVKPSHFTYKILID TKGQSNDIAGMEQIVETMKAEGIEPNHQVQAALARYYTSAGLKEKAEAILQEIEGENLRDNLWVCPTLLRLYANLGKADE VERIWKVVESKPGIDVCLAAVEAWGRLQKIEEAEAIFEMMANKWKLSSKNYSVLLKVYANHKMLKKGKDLIQRMGENGCK IGPLTWDSLVKLYTQAGEVEKADAVLQKVMEQSRMTPMFNTYMAVMEQYAKRGDVHNSEKIFHRMRQAGYTSRITPFQVL VQAYIKAKVPAYGIRDRMKADNVFPNNTLAKQLAQVDAFKKTAVSDLLD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 45 | 605 | 561 | 4.0E-296 | – | |
| PANTHER | 45 | 605 | 561 | 4.0E-296 | – | |
| MobiDBLite | 98 | 138 | 41 | - | – | |
| MobiDBLite | 117 | 138 | 22 | - | – | |
| Gene3D | 177 | 418 | 242 | 6.5E-25 | ||
| ProSiteProfiles | 242 | 276 | 35 | 7.377 | ||
| Pfam | 278 | 323 | 46 | 8.0E-4 | ||
| ProSiteProfiles | 311 | 345 | 35 | 8.714 | ||
| SUPERFAMILY | 342 | 548 | 207 | 2.66E-7 | ||
| ProSiteProfiles | 346 | 380 | 35 | 5.766 | ||
| ProSiteProfiles | 381 | 411 | 31 | 6.577 | ||
| ProSiteProfiles | 413 | 443 | 31 | 5.941 | ||
| Gene3D | 421 | 605 | 185 | 2.9E-23 | ||
| ProSiteProfiles | 447 | 481 | 35 | 8.955 | ||
| Pfam | 451 | 479 | 29 | 0.0085 | ||
| TIGRFAM | 451 | 481 | 31 | 5.6E-4 | ||
| ProSiteProfiles | 482 | 517 | 36 | 9.24 | ||
| Pfam | 485 | 510 | 26 | 0.13 | ||
| ProSiteProfiles | 518 | 552 | 35 | 8.824 | ||
| Pfam | 521 | 549 | 29 | 0.0054 | ||
| TIGRFAM | 521 | 550 | 30 | 0.0016 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0199400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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