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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0205000 |
| Transcript ID | LotjaGi1g1v0205000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor; TAIR: AT5G03415.1 Transcription factor DP; Swiss-Prot: sp|Q9FNY2|DPB_ARATH Transcription factor-like protein DPB; TrEMBL-Plants: tr|A0A151SD62|A0A151SD62_CAJCA Transcription factor Dp-1; Found in the gene: LotjaGi1g1v0205000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:44306403..44310233) extracted from Lotus japonicus Gifu genome v1.2.
AACGTGTTGTTGCAGGTGATAAGAGTGGAAGGGGGCTCCGCCAACTTAGTATGAAAGGTTCGACCAGTTTGTCCTTTTAT GAAAAAAGGGTTATTGATACTATTCTTATTGTTTTTTTTTTTCTTATTTATTGTTGCCTTTCTCTAGTGTGTGAGAAGGT AGAAAGCAAGGGAAGAACAACTTACAATGAGGTTAGACAGATAATTTAAGTTAGTTTTTGCTGAAGTGGAATTAAAATTT GGCTTCTATTTATAATATAGTCAATGCACATAAATAAATTTGTATCATATAACAAGTGCGTGTTTTAATTAATTTTTAAT ATATTTCTGTCAATATGTTTGCATTTGTTTGTGCATGTTTGGAGCTCTAATTTGTAGTGTACTAAATCTAAATTGAGTCC ATTGAAGAGCATGCTTATAAATTTTAAAATGGAATCATACTTAGAATTTCCTGTGCTTATATTCATTTCAATCTGTCATT CATATTTTCTTCTTTATGAGACATAACCATAATCCAGACATAAGAGTTACAACCTGACTTCTTAGATGCATATGATGTTT TCATTTAGGAATTCTTCGAGAACAACAATATTGACTCTGCTTGTGCTTCCTCTACATTTCATTTCTTCTGTTTCTATTGT TAATGGAAGCTTATATATTGAGGATTTAATGTAATTTGAGGGTAAGAGACAGGATAATATAATTTTAGGGAGAAGTTTTC TTCTCATGCTTGTTTTTATATTGATTAGATTTTCCAAAAGTTGAATGTATTAAATTCTCGGTTTGTTAACTACTTGTGAG AAAATACATATGCACATGGATGCCACAGTAGGAAAAATGACCATCCTGATACTTTTTTACAGATTCATTAAATTGGAGAA AAATTATAGTATTGGATCTATAAGCTAGTTAGACTTTCAAACAATGTAGGATAGGAGCTGAGGTTGTGGTTGTGCAAGTT ATATCACTTTGTACATGGTCATTTCCCTGTATTTTCTTACGGGCTCTAGCAAGTGAACACTGTCTTTTATTGGCTATAGA AAAATTATTTTCATTTGTATTGTTAGGAAATGATTCTAAAGATACTATTCTAAGCCTACAAAACAAAACTGCTGAGAACA TATGCATTTTCAGGTCCTTCTTTGAATCTTGTTGAAAAAGTCCTAATTTATTTTTAAAACTTGATGTACATTGTGGATGG GCTTTATGTTGTAGGTAGCAGATGAACTTGTGACTGAATTTGCTGATCCAAGCCATAACTCTTTATCCCCTGATCAGGTT TACTTTCTTCGCATAAATAATTTTAATAATATCCTCTATCCACGGATTGTGATGGACTTACATTTTTCACGGTCAACATT TCTCAGCAACAATATAATGAGAAAAACATTCGTCGAAGGGTGTATGATGCTTTGAATGTTCTCATGGCAATGGATATTAT TTCTAAGGATAAGAAGGAAATACAATGGAGAGGTCTTCCTCGCACTAGTTTGAATGATATGGAAGAACTAAAGGTTTATA AACAGTCTTGAGTTGACCTAAATGATCTGTTTATTTTTATCTAATATGAAAATACAGTAAATGATAATTTTATTAACTAG AACTGATTCAACAGGCAGAGCGTCTTGGGATAAGGAATAGAATTGAAAAGAAAAGAGCCTATTTGCAAGAAATGAAGGAC CAAGTAAGGACCCCTCGCCCTAGCTGATTTAATCTGTAAAATGTACTCCTGGGCTTGGCTTACAACCACAAAGAATATAT TTTATTTTTTCATTTTGCATTTTCACATGGTTAGAGAAGGCCCTAACAAATGATTTTTTTCCATAATGGTCAATTTATTT ATGTTAACTTCTTGTATTATTTTATCAAGTACATAGGTCTTCAGAACCTTATACAACGAAATGAGCAATTATATAGCTCA GGAAATGCTCCAAGTGGTGGTGTATCTCTGCCTTTTATTTTAGTGCAGGTACACTATTATCTCATTGTTTCCTGTTTTTG GTTATAGTTTGTCAACTTTTAATTGGTTATCAAGTTTTCCTCTTGATCTTCATTTTGTACGGTGAATCTTATATTTTGCA TGTCTCAAGTTCAAAGTTCCTAGCAAGGAATAGATGATTGGCTTGAGATTTGAGTTGCATAAATCTATTATAATTTATTT ATGCTTGCAGTGTATAGTTATTTCTCACTCCAGCTTCTTAGCTAACCACTAGAAATAACTTATTTATGGCAGTGTGTAAT TTATTTATGCTGGCAGTGTATAGTTATTTCACCATCTCACTCCAGCTTCTTATCTAACCACTAGAAATAATTTTTCACCT TTCATGTGACATTCATTAGAATTTGTTAACTGAAAATTAAATGTTGTTGCTATGGTTATCATATGCCCCACATTAGAAAG ATAATATCATTTTACATTGTTAATTGTTGAGTTCACTTTACATGGGTTATGTTAGGCAGTACATGTAAGAAGAGAAGTTT GATAGAATTTGAGAGAAAACATAGTGTATTGAATCTGAGAAAATAAAATTTTGTATTATTTTTTTCGTTCATAGCTATTA TAGTACAAGATATGGGTATCTAACCCAGATTCTGTTCAAAGTACCTAACTGAAAGATAACTCCCAATTGTGACAATTAGG AGCAAGTGAGATGGTGAAGCCTGATAAGATGTATATGTACAATTTATTTATGCTGGCAGTGTATAGTTAATTATATATTA AAATTTTAGTTGGGTCCCTCTAAACATTTTATTGAAGCTCTGACACTACTATGGAAGATTCATGATGATTGCTCTAAGAT GGTTGCAAGTTCATCATTTTTTTTAAAGAATTATTTTTTTAAAGAAATGAAGAAACTAAATTACACACAAATATATACAT ATATGTGTGTGTAGATGTATAATATAAAATTGAATTATGAATTGCTGGTATTACTTTTAAATTAATATAATTTCTGGTTT TCGGAAATTGCAGACTCGCCCCCATGCAACTGTTGAAATGGAAATATCAGAAGACATGCAACTTGTGCATTTTGATTTTA ATAGGTAAAAGGCTTCAGTCACTTGGTATTCTTCCTGAAAGAATCATGATGGCAACATCTTGTCCTATGTTGTCTTAGTG TGAAAATTTCCTTATTCACTAGGGTCATATTTTCAAACACCAATTGGTCATTTTATGGTCTAACTGAGCTTTTCTTGAGA AATGTATTATATGCCTTTCTCATAGCCTCTTATTAAAACTTTATTTTGTTCAAATTCTTTTTCATATGTATGCTTACTTT TTCTTCTCTCTTTCCACAGCTCTCCTTTTGAGCTTCATGACGACAATTATGTTCTCAAGGAAATGAAATTTTGTGAGCGA CCTCAGAATGATAACATGACGCCCAATCCTACTGATGGGGGTGAAGGTTCTAGCATGTTAGGTATGTATCATACACAGGT TCCTACTTTAGTTCCAAACCCGACAAATAGGCTTCCCGCATCACCACCACTACTTGGAATATTGAAGGCAAGAGATAAGA ATGAGCATTGATCTGCAGAATCGTCTTGTCTCTATAGGCATTTCTGTATATTTTGTAAAATAATTTGCCAGCGACTAATT GCCCTTCATAATATTCAACCAGCTAGCCAGAGTCAATATCTAGGTTAGAAGCAAATTGGTCAGCTTGCTTCTCTATATTC TTCTTTGACAAACCCTTCGCTAACCATATCCATTATCCAGTTCTATTTTGTCCCTGTATGTACTCTTTTGTAGTTATACT AGAGAAATTTGTTTGTACTAGTTCATGAAGATCATGGAATGCTATACATCAGCGCATGATTTACTTTTTAA
CDS sequence (LotjaGi1g1v0205000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGTGTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCAGATGAACTTGTGACTGAATTTGC TGATCCAAGCCATAACTCTTTATCCCCTGATCAGCAACAATATAATGAGAAAAACATTCGTCGAAGGGTGTATGATGCTT TGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAGAAGGAAATACAATGGAGAGGTCTTCCTCGCACTAGTTTG AATGATATGGAAGAACTAAAGGCAGAGCGTCTTGGGATAAGGAATAGAATTGAAAAGAAAAGAGCCTATTTGCAAGAAAT GAAGGACCAATACATAGGTCTTCAGAACCTTATACAACGAAATGAGCAATTATATAGCTCAGGAAATGCTCCAAGTGGTG GTGTATCTCTGCCTTTTATTTTAGTGCAGACTCGCCCCCATGCAACTGTTGAAATGGAAATATCAGAAGACATGCAACTT GTGCATTTTGATTTTAATAGCTCTCCTTTTGAGCTTCATGACGACAATTATGTTCTCAAGGAAATGAAATTTTGTGAGCG ACCTCAGAATGATAACATGACGCCCAATCCTACTGATGGGGGTGAAGGTTCTAGCATGTTAGGTATGTATCATACACAGG TTCCTACTTTAGTTCCAAACCCGACAAATAGGCTTCCCGCATCACCACCACTACTTGGAATATTGAAGGCAAGAGATAAG AATGAGCATTGA
Protein sequence (LotjaGi1g1v0205000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKVCEKVESKGRTTYNEVADELVTEFADPSHNSLSPDQQQYNEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRTSL NDMEELKAERLGIRNRIEKKRAYLQEMKDQYIGLQNLIQRNEQLYSSGNAPSGGVSLPFILVQTRPHATVEMEISEDMQL VHFDFNSSPFELHDDNYVLKEMKFCERPQNDNMTPNPTDGGEGSSMLGMYHTQVPTLVPNPTNRLPASPPLLGILKARDK NEH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 79 | 79 | 2.3E-34 | ||
| PIRSF | 1 | 243 | 243 | 9.6E-109 | ||
| SMART | 1 | 74 | 74 | 8.7E-25 | ||
| Pfam | 1 | 74 | 74 | 2.7E-21 | ||
| PANTHER | 1 | 211 | 211 | 6.9E-116 | ||
| SUPERFAMILY | 1 | 75 | 75 | 6.12E-19 | ||
| CDD | 79 | 182 | 104 | 6.12913E-44 | ||
| Gene3D | 80 | 200 | 121 | 2.8E-36 | ||
| SUPERFAMILY | 80 | 197 | 118 | 4.18E-43 | ||
| SMART | 81 | 241 | 161 | 5.9E-70 | ||
| Pfam | 82 | 206 | 125 | 2.5E-41 | ||
| Coils | 104 | 124 | 21 | - | – | |
| MobiDBLite | 219 | 243 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Transcription factor complex | A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Regulation of cell cycle | Any process that modulates the rate or extent of progression through the cell cycle. |
Expression pattern of LotjaGi1g1v0205000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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